Contig 005606:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN003I16Sequence627005606 (7)emb|CDO97373.1|7e-49unnamed protein product [Coffea canephora]
JMFN018H13Sequence621005606 (7)emb|CDO97373.1|6e-49unnamed protein product [Coffea canephora]
JMFN038F10Sequence623005606 (7)emb|CDO97373.1|6e-49unnamed protein product [Coffea canephora]
JMSF007M10Sequence295005606 (7)767005606 (7)emb|CDO97373.1|9e-34unnamed protein product [Coffea canephora]
JMSF030N09Sequence660005606 (7)emb|CDO97373.1|1e-48unnamed protein product [Coffea canephora]703005606 (7)emb|CDO97373.1|2e-48unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFN003I16+                                             ATATATATTATATATCCCTCTGGTTC
JMFN038F10+                          AAATGCAAAGAATGTCTACATATATATTATATATCCCTCTGGTTC
rJMSF030N09-                         AAATGCAAAGAATGTCTACATATATATTATATATCCCTCTGGTTC
JMSF030N09+                                                                  GGTTC
rJMSF007M10-                      TTCAAATGCAAAGAATGTCTACATATATATTATATATCCCTCTGGTTC
                      ____________________________________________________________
consensus                         TTCAAATGCAAAGAATGTCTACATATATATTATATATCCCTCTGGTTC
 
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JMFN003I16+           ATAATAAACTTATTGGAATGCAAAGTTGGGGAAAATGCCAACTTGTCATTCATTGCATAC
JMFN038F10+           ATAATAAACTTATTGGAATGCAAAGTTGGGGAAAATGCCAACTTGTCATTCATTGCATAC
rJMSF030N09-          ATAATAAACTTATTGGAATGCAAAGTTGGGGAAAATGCCAACTTGTCATTCATTGCATAC
JMFN018H13+                                                CCAACTTGTCATTCATTGCATAC
JMSF030N09+           ATAATAAACTTANTGGAATGCAAAGTTGGGGAAAATGCCAACTTGTCATTCATTGCATAC
rJMSF007M10-          ATAATAAACTTATTGGAATGCAAAGTTGGGGAAAATGCCAACTTGTCATTCATTGCATAC
                      ____________________________________________________________
consensus             ATAATAAACTTATTGGAATGCAAAGTTGGGGAAAATGCCAACTTGTCATTCATTGCATAC
 
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JMFN003I16+           AGGTTTCAAAGAATAGTTCAATAATAATCGAAACGTAAGCAAAGCTTAGGGCGGGTGGGC
JMFN038F10+           AGGTTTCAAAGAATAGTTCAATAATAATCGAAACGTAAGCAAAGCTTAGGGCGGGTGGGC
rJMSF030N09-          AGGTTTCAAAGAATAGTTCAATAATAATCGAAACGTAAGCAAAGCTTAGGGCGGGTGGGC
JMFN018H13+           AGGTTTCAAAGAATAGTTCAATAATAATCGAAACGTAAGCAAAGCTTAGGGCGGGTGGGC
JMSF030N09+           AGGTTTCAAAGAATAGTTCAATAATAATCGAAACGTAAGCAAAGCTTAGGGCGGGTGGGC
rJMSF007M10-          AGGTTTCAAAGAATAGTTCAATAATAATCGAAACGTAAGCAAAGCTTAGGGCGGGTGGGC
                      ____________________________________________________________
consensus             AGGTTTCAAAGAATAGTTCAATAATAATCGAAACGTAAGCAAAGCTTAGGGCGGGTGGGC
 
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JMFN003I16+           AGGCAACAGGCTTAAGCGTTGAGCATAGTGCTTCGTTTGCACTCGGATAGCATGTCCATG
JMFN038F10+           AGGCAACAGGCTTAAGCGTTGAGCATAGTGCTTCGTTTGCACTCGGATAGCATGTCCATG
rJMSF030N09-          AGGCAACAGGCTTAAGCGTTGAGCATAGTGCTTCGTTTGCACTCGGATAGCATGTCCATG
JMFN018H13+           AGGCAACAGGCTTAAGCGTTGAGCATAGTGCTTCGTTTGCACTCGGATAGCATGTCCATG
JMSF030N09+           AGGCAACAGGCTTAAGCGTTGAGCATAGTGCTTCGTTTGCACTCGGATAGCATGTCCATG
rJMSF007M10-          AGGCAACAGGCTTAAGCGTTGAGCATAGTGCTTCGTTTGCACTCGGATAGCATGTCCATG
                      ____________________________________________________________
consensus             AGGCAACAGGCTTAAGCGTTGAGCATAGTGCTTCGTTTGCACTCGGATAGCATGTCCATG
 
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JMFN003I16+           TAGAACTGGCACTTCCCGATATCGTTTCCAGAGCTATTCAAGCAATCTTGGAAAGCCTTG
JMFN038F10+           TAGAACTGGCACTTCCCGATATCGTTTCCAGAGCTATTCAAGCAATCTTGGAAAGCCTTG
rJMSF030N09-          TAGAACTGGCACTTCCCGATATCGTTTCCAGAGCTATTCAAGCAATCTTGGAAAGCCTTG
JMFN018H13+           TAGAACTGGCACTTCCCGATATCGTTTCCAGAGCTATTCAAGCAATCTTGGAAAGCCTTG
JMSF030N09+           TAGAACTGGCACTTCCCGATATCGTTTCCAGAGCTATTCAAGCAATCTTGGAAAGCCTTG
rJMSF007M10-          TAGAACTGGCACTTCCCGATATCGTTTCCAGAGCTA-TCAAGCAATCTTGGAAAGCCTTG
                      ____________________________________________________________
consensus             TAGAACTGGCACTTCCCGATATCGTTTCCAGAGCTATTCAAGCAATCTTGGAAAGCCTTG
 
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JMFN003I16+           GATTGAACGCTGCAAGCGTCTGAGTTCCCAAAGGTGTTCATCGAGGGTGCTGCAGCAGGA
JMFN038F10+           GATTGAACGCTGCAAGCGTCTGAGTTCCCAAAGGTGTTCATCGAGGGTGCTGCAGCAGGA
rJMSF030N09-          GATTGAACGCTGCAAGCGTCTGAGTTCCCAAAGGTGTTCATCGAGGGTGCTGCAGCAGGA
JMFN018H13+           GATTGAACGCTGCAAGCGTCTGAGTTCCCAAAGGTGTTCATCGAGGGTGCTGCAGCAGGA
JMSF030N09+           GATTGAACGCTGCAAGCGTCTGAGTTCCCAAAGGTGTTCATCGAGGGTGCTGCAGCAGGA
rJMSF007M10-          GATTGAACGCTGCAAGCGTCTGAGTTCCCAAAGGTGTTCATCGAGGGTGCTGCAGCAGGA
                      ____________________________________________________________
consensus             GATTGAACGCTGCAAGCGTCTGAGTTCCCAAAGGTGTTCATCGAGGGTGCTGCAGCAGGA
 
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JMFN003I16+           GCGGGAGCAGCAACAGTTTCGTGCTGAATAACACGAGGGCCCATGATCGAATCCACAGCC
JMFN038F10+           GCGGGAGCAGCAACAGTTTCGTGCTGAATAACACGAGGGCCCATGATCGAATCCACAGCC
rJMSF030N09-          GCGGGAGCAGCAACAGTTTCGTGCTGAATAACACGAGGGCCCATGATCGAATCCACAGCC
JMFN018H13+           GCGGGAGCAGCAACAGTTTCGTGCTGAATAACACGAGGGCCCATGATCGAATCCACAGCC
JMSF030N09+           GCGGGAGCAGCAACAGTTTCGTGCTGAATAACACGAGGGCCCATGATCGAATCCACAGCC
rJMSF007M10-          GCGGGAGCAGCAACAGTTTCGTGCTGAATAACACGAGGGCCCATGATCGAATCCACAGCC
                      ____________________________________________________________
consensus             GCGGGAGCAGCAACAGTTTCGTGCTGAATAACACGAGGGCCCATGATCGAATCCACAGCC
 
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JMFN003I16+           CTGTGTGCAATGGCGCTTCCAGTTCCAAAGGCCATGCCTTCAGCTATGGTCGAACCAATG
JMFN038F10+           CTGTGTGCAATGGCGCTTCCAGTTCCAAAGGCCATGCCTTCAGCTATGGTCGAACCAATG
rJMSF030N09-          CTGTGTGCAATGGCGCTTCCAGTTCCAAAGGCCATGCCTTCAGCTATGGTCGAACCAATG
JMFN018H13+           CTGTGTGCAATGGCGCTTCCAGTTCCAAAGGCCATGCCTTCAGCTATGGTCGAACCAATG
JMSF030N09+           CTGTGTGCAATGGCGCTTCCAGTTCCAAAGGCCATGCCTTCAGCTATGGTCGAACCAATG
rJMSF007M10-          CTGTGTGCAATGGCGCTTCCAGTTCCAAAGGCCATGCCTTCAGCTATGGTCGAACCAATG
                      ____________________________________________________________
consensus             CTGTGTGCAATGGCGCTTCCAGTTCCAAAGGCCATGCCTTCAGCTATGGTCGAACCAATG
 
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JMFN003I16+           TTCCCAAGCATGGATCCTCCACGGCTGTTTTGTGCAGGAGCTGGAGGAGGAGCATGGTTA
JMFN038F10+           TTCCCAAGCATGGATCCTCCACGGCTGTTTTGTGCAGGAGCTGGAGGAGGAGCATGGTTA
rJMSF030N09-          TTCCCAAGCATGGATCCTCCACGGCTGTTTTGTGCAGGAGCTGGAGGAGGAGCATGGTTA
JMFN018H13+           TTCCCAAGCATGGATCCTCCACGGCTGTTTTGTGCAGGAGCTGGAGGAGGAGCATGGTTA
JMSF030N09+           TTCCCAAGCATGGATCCTCCACGGCTGTTTTGTGCAGGAGCTGGAGGAGGAGCATGGTTA
JMSF007M10+                AAGCATGGATCCTCCACGGCTGTTTTGTGCAGGAGCTGGAGGAGGAGCATGGTTA
rJMSF007M10-          TTCCCAAGCATGGATCCTCCACGGCTGTTTTGTGCAGGAGCTGGAGGAGGAGCATGGTTA
                      ____________________________________________________________
consensus             TTCCCAAGCATGGATCCTCCACGGCTGTTTTGTGCAGGAGCTGGAGGAGGAGCATGGTTA
 
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JMFN003I16+           ACTGTAGCTGGAGCTGGTGCTCGTGCAGGACGAGGAGCAGGGCGTGGTGCAGATCTTCCT
JMFN038F10+           ACTGTAGCTGGAGCTGGTGCTCGTGCAGGACGAGGAGCAGGGCGTGGTGCAGATCTTCCT
rJMSF030N09-          ACTGTAGCTGGAGCTGGTGCTCGTGCAGGACGAGGAGCAGGGCGTGGTGCAGATCTTCCT
JMFN018H13+           ACTGTAGCTGGAGCTGGTGCTCGTGCAGGACGAGGAGCAGGGCGTGGTGCAGATCTTCCT
JMSF030N09+           ACTGTAGCTGGAGCTGGTGCTCGTGCAGGACGAGGAGCAGGGCGTGGTGCAGATCTTCCT
JMSF007M10+           ACTGTAGCTGGAGCTGGTGCTCGTGCAGGACGAGGAGCAGGGCGTGGTGCAGATCTTCCT
rJMSF007M10-          ACTGTAGCTGGAGCTGGTGCTCGTGCAGGACGAGGAGCAGGGCGTGGTGCAGATCTTCCT
                      ____________________________________________________________
consensus             ACTGTAGCTGGAGCTGGTGCTCGTGCAGGACGAGGAGCAGGGCGTGGTGCAGATCTTCCT
 
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JMFN003I16+           GAGCTTCGGCGAGCCATTCTTTTCCCGGATAGCTGTGGCGAAATCTAGCGAAAGGATGTA
JMFN038F10+           GAGCTTCGGCGAGCCATTCTTTTCCCGGATAGCTGTGG                      
rJMSF030N09-          GAGCTTCGGCGAGCCATTCTTTTCCCGGATAGCTGTGGCGAAATCTAGCGAAAGGATGTA
JMFN018H13+           GAGCTTCGGCGAGCCATTCTTTTCCCGGATAGCTGTGGCGAAATCTAGCGAAAGGATGTA
JMSF030N09+           GAGCTTCGGCGAGCCATTCTTTTCCCGGATAGCTGTGGCGAAATCTAGCGAAAGGATGTA
JMSF007M10+           GAGCTTCGGCGAGCCATTCTTTTCCCGGATAGCTGTGGCGAAATCTAGCGAAAGGATGTA
rJMSF007M10-          GAGCTTCGGCGAGCCATTCTTTTCCCGGATAGCTGTGGCGAAATCTAGCGAAAGGATGTA
                      ____________________________________________________________
consensus             GAGCTTCGGCGAGCCATTCTTTTCCCGGATAGCTGTGGCGAAATCTAGCGAAAGGATGTA
 
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JMFN003I16+           A                                                           
rJMSF030N09-          ATGCAAAGACGTTAGCTTTAACAAAATTTATGGCTTTTGGCTTCACAGAATGTC      
JMFN018H13+           ATGCAAAGACGTTAGCTTTAACAAAATTTATGGCTTT                       
JMSF030N09+           ATGCAAAGACGTTAGCTTTAACAAAATTTATGGCTTTTGGCTTCACAGAATGTC      
JMSF007M10+           ATGCAAAGACGTTAGCTTTAACAAAATTTATGGCTTTTGGCTTCACAGAATGTCGCCAAA
rJMSF007M10-          ATGCAAAGACGTTAGCTTTAACAAAATTTATGGCTTTTGGCTTCACAGAATGTCGCCAAA
                      ____________________________________________________________
consensus             ATGCAAAGACGTTAGCTTTAACAAAATTTATGGCTTTTGGCTTCACAGAATGTCGCCAAA
 
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JMSF007M10+           CCTAAGAACTCCACGTGCTTTTATACACGGCTTGAGCGATGGCGGTGCTCGATAATTTCC
rJMSF007M10-          CCTAAGAACTCCACGTGCTTTTATACACGGCTTGAGCGATGGCGGTGCTCGATAATTTCC
                      ____________________________________________________________
consensus             CCTAAGAACTCCACGTGCTTTTATACACGGCTTGAGCGATGGCGGTGCTCGATAATTTCC