Contig 005599:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF003K11-                                                       TTGGGGCCCTCAACTT
JMSF049A22-                                                       TTGGGGCCCTCAACTT
                      ____________________________________________________________
consensus                                                         TTGGGGCCCTCAACTT
 
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JMSF003K11-           CTTCTGCTCTGCGCGCCTCCCTCGTTCCTCGAATTAGAAGAGGATGAAACTTATTCAAGG
JMSF049A22-           CTTCTGCTCTGCGCGCCTCCCTCGTTCCTCGAATTAGAAGAGGATGAAACTTATTCAAGG
                      ____________________________________________________________
consensus             CTTCTGCTCTGCGCGCCTCCCTCGTTCCTCGAATTAGAAGAGGATGAAACTTATTCAAGG
 
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JMSF003K11-           TATCTTGTATCATGCTAATGCTGGCCTTTCTCGTAAATTTCTCAGTCCTCAAGTGATCAG
JMSF049A22-           TATCTTGTATCATGCTAATGCTGGCCTTTCTCGTAAATTTCTCAGTCCTCAAGTGATCAG
                      ____________________________________________________________
consensus             TATCTTGTATCATGCTAATGCTGGCCTTTCTCGTAAATTTCTCAGTCCTCAAGTGATCAG
 
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JMSF003K11-           GACCTTTTCTACTAATCCAGGATACGATGTTAACAAGCTTAATCGAAGCTCAGTTGAGTC
JMSF049A22-           GACCTTTTCTACTAATCCAGGATACGATGTTAACAAGCTTAATCGAAGCTCAGTTGAGTC
                      ____________________________________________________________
consensus             GACCTTTTCTACTAATCCAGGATACGATGTTAACAAGCTTAATCGAAGCTCAGTTGAGTC
 
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JMSF003K11-           CGCTGATGACTTTGAGCAACGGATTTTTGGTGATAATGGTGGGAAAAGTCAAACTAATAA
JMSF049A22-           CGCTGATGACTTTGAGCAACGGATTTTTGGTGATAATGGTGGGAAAAGTCAAACTAATAA
                      ____________________________________________________________
consensus             CGCTGATGACTTTGAGCAACGGATTTTTGGTGATAATGGTGGGAAAAGTCAAACTAATAA
 
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JMSF003K11-           CTCCTTTTACCGACACCTTGATAAGGCTGAGAGAGATCATAATAGATTTTGGCAGGGCTC
JMSF049A22-           CTCCTTTTACCGACACCTTGATAAGGCTGAGAGAGATCATAATAGATTTTGGCAGGGCTC
                      ____________________________________________________________
consensus             CTCCTTTTACCGACACCTTGATAAGGCTGAGAGAGATCATAATAGATTTTGGCAGGGCTC
 
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JMSF003K11-           CNACATCAATTCTGAAAACAGTTCTGCATTCTTA                          
JMSF049A22-           CAACATCAATTCTGAAAACAGTTCTGCATTCTTAGATGATCTAGATGAGAGTTTTAACAC
rJMSF003K11+                                         TTAGATGATCTAGATGAGAGTTTTAACAC
                      ____________________________________________________________
consensus             CAACATCAATTCTGAAAACAGTTCTGCATTCTTAGATGATCTAGATGAGAGTTTTAACAC
 
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JMSF049A22-           ATTGTCTGATGGGATGGATAATAAGTTGAAGGAGGCAGCCAGATATTTTGAGTATGACCC
rJMSF049A22+                                     GAAGGAGGCAGCCAGATATTTTGAGTATGACCC
rJMSF003K11+          ATTGTCTGATGGGATGGATAATAAGNTGAAGGAGGCAGCCAGATATTTTGAGTATGACCC
                      ____________________________________________________________
consensus             ATTGTCTGATGGGATGGATAATAAGTTGAAGGAGGCAGCCAGATATTTTGAGTATGACCC
 
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JMSF049A22-           TGAAGAAGTTGATAAAGAAGATTACTCTTTCAGAAAGGATGTAACTTTTTGGCCTGGGAA
rJMSF049A22+          TGAAGAAGTTGATAAAGAAGATTACTCTTTCAGAAAGGATGTAACTTTTTGGCCTGGGAA
rJMSF003K11+          TGAAGAAGTTGATAAAGAAGATTACTCTTTCAGAAAGGATGTAACTTTTTGGCCTGGGAA
                      ____________________________________________________________
consensus             TGAAGAAGTTGATAAAGAAGATTACTCTTTCAGAAAGGATGTAACTTTTTGGCCTGGGAA
 
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JMSF049A22-           TACTTACGATATCAAGGATCTTGATCTTAGAAAACCAGGAGTACAGAAGCAACCGAAAAG
rJMSF049A22+          TACTTACGATATCAAGGATCTTGATCTTAGAAAACCAGGAGTACAGAAGCAACCGAAAAG
rJMSF003K11+          TACTTACGATATCAAGGATCTTGATCTTAGAAAACCAGGAGTACAGAAGCAACCGAAAAG
                      ____________________________________________________________
consensus             TACTTACGATATCAAGGATCTTGATCTTAGAAAACCAGGAGTACAGAAGCAACCGAAAAG
 
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JMSF049A22-           GTCAGGGTTTGAAACAACAACAGAAGAAGTATTGCAGAAAGCTGATTTCAGGAATGTGAG
rJMSF049A22+          GTCAGGGTTTGAAACAACAACAGAAGAAGTATTGCAGAAAGCTGATTTCAGGAATGTGAG
rJMSF003K11+          GTCAGGGTTTGAAACAACAACAGAAGAAGTATTGCAGAAAGCTGATTTCAGGAATGTGAG
                      ____________________________________________________________
consensus             GTCAGGGTTTGAAACAACAACAGAAGAAGTATTGCAGAAAGCTGATTTCAGGAATGTGAG
 
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JMSF049A22-           ATTCCTTGCTAATTTTATTACAGATGCTGGAATTATCAT                     
rJMSF049A22+          ATTCCTTGCTAATTTTATTACAGATGCTGGAATTATCATCAAGAGAAACAAGACTAAAAT
rJMSF003K11+          ATTCCTTGCTAATTTTATTACAGATGCTGGAATTATCATCAAGAGAAACAAGACTAAAAT
                      ____________________________________________________________
consensus             ATTCCTTGCTAATTTTATTACAGATGCTGGAATTATCATCAAGAGAAACAAGACTAAAAT
 
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rJMSF049A22+          AAGTGCCAAGGCTCAAAGGAAGATTGCTAGGGAGATCAAGACTGCCCGGGCTTTCGGTCT
rJMSF003K11+          AAGTGCCAAGGCTCAAAGGAAGATTGCTAGGGAGATCAAGACTGCCCGGGCTTTCGGTCT
                      ____________________________________________________________
consensus             AAGTGCCAAGGCTCAAAGGAAGATTGCTAGGGAGATCAAGACTGCCCGGGCTTTCGGTCT
 
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rJMSF049A22+          TCTGCCTTTCACCACTATGGGAACCAAACATTTTGTATTTGGCCGAACTATGCAGGCCCT
rJMSF003K11+          TCTGCCTTTCACCACTATGGGAACCAAACATTTTGTATTTGGCCGAACTATGCAGGCCCT
                      ____________________________________________________________
consensus             TCTGCCTTTCACCACTATGGGAACCAAACATTTTGTATTTGGCCGAACTATGCAGGCCCT
 
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rJMSF049A22+          AGAAGACGATTATGCATACGAGACTAACTACGCTCGCAACTTCGTTGATACAGATGCAAG
rJMSF003K11+          AGAAGACGATTATGCATACGAGACTAACTACGCTCGCAACTTCGTTGATACAGATGCAAG
                      ____________________________________________________________
consensus             AGAAGACGATTATGCATACGAGACTAACTACGCTCGCAACTTCGTTGATACAGATGCAAG
 
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rJMSF049A22+          TCAAGAACCGCTAGGCTAAACCCATTCTTTTTTGTTTTAGCCGCTTATGTTCTTATGAAT
rJMSF003K11+          TCAAGAACCGCTAGGCTAAACCCATTCTTTTTTGTTTTAGCCGCTTATGTTCTTATGAAT
                      ____________________________________________________________
consensus             TCAAGAACCGCTAGGCTAAACCCATTCTTTTTTGTTTTAGCCGCTTATGTTCTTATGAAT
 
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rJMSF049A22+          AAGCTCTGAGTTATGAATGATGAAATATTTTTGCCTGAAAAATTGCATTAGATTTGCTAA
rJMSF003K11+          AAGCTCTGAGTTATGAATGATGAAATATTTTTGCCTGAAAAATTGCATTAGATTTGCTAA
                      ____________________________________________________________
consensus             AAGCTCTGAGTTATGAATGATGAAATATTTTTGCCTGAAAAATTGCATTAGATTTGCTAA
 
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rJMSF049A22+          GCATGTACTTCCCATATATGATCTCAAGGGAAAAACACATAGAAGATGCTGTAGTGTGCA
rJMSF003K11+          GCATGTACTTCCCATATATGATCTCAAGGGAAAAACACATAGAAGATGCTGTAGTGTGCA
                      ____________________________________________________________
consensus             GCATGTACTTCCCATATATGATCTCAAGGGAAAAACACATAGAAGATGCTGTAGTGTGCA
 
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rJMSF049A22+          TGATTCTGCTTCGCAGTTTTGCATATGTAAACGCTATTAAAC                  
rJMSF003K11+          TGATTCTGCTTCGCAGTTTTGCATATGTAAACGCTATTAAACCAGTAACCTTTCACGATT
                      ____________________________________________________________
consensus             TGATTCTGCTTCGCAGTTTTGCATATGTAAACGCTATTAAACCAGTAACCTTTCACGATT