Contig 005598:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003B19Sequence328006354 (4)ref|XP_009631176.1|5e-22PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial795005598 (3)ref|XP_009778230.1|3e-75PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial
JMSF020F12Sequence681006354 (4)ref|XP_009631176.1|4e-119PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial764005598 (3)ref|XP_009778230.1|1e-93PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial
JMSF042E09Sequence802006354 (4)ref|XP_009631176.1|4e-140PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial819005598 (3)ref|XP_009778230.1|4e-67PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial

Alignment

This contig is upended


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rJMSF020F12+                                                   ATAAGCAGTTAACTGTGTA
rJMSF042E09+                                  TCGACGTGCATTCTTGAATAAGCAGTTAACTGTGTA
                      ____________________________________________________________
consensus                                     TCGACGTGCATTCTTGAATAAGCAGTTAACTGTGTA
 
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rJMSF020F12+          CCATGTTGCATTTCATGCTTGTGCGGATCTGAAAAATGTGGAGGCTATTGATACACTTCA
rJMSF042E09+          CCATGTTGCATTTCATGCTTGTGCGGATCTGAAAAATGTGGAGGCTATTGATACACTTCA
rJMSF003B19+                                                       TATTGATACACTTCA
                      ____________________________________________________________
consensus             CCATGTTGCATTTCATGCTTGTGCGGATCTGAAAAATGTGGAGGCTATTGATACACTTCA
 
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rJMSF020F12+          TCAGATGCTTGAAAAGGATGGTAAAACACCTGATGTGTTCATCCTGATGCAACTCATGAG
rJMSF042E09+          TCAGATGCTTGAAAAGGATGGTAAAACACCTGATGTGTTCATCCTGATGCAGCTCATGAG
rJMSF003B19+          TCAGATGCCTGAAAAGGATGGTAAANCACCTGATGTGTTCATCCTGATGCAACTCATGAG
                      ____________________________________________________________
consensus             TCAGATGCTTGAAAAGGATGGTAAAACACCTGATGTGTTCATCCTGATGCAACTCATGAG
 
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rJMSF020F12+          GTGCTATCTACATACAGGGGACTTAGATCGTGGTCTTAAAGTTTTTGAGGACTACATGAA
rJMSF042E09+          GTGCTATCTACATACAGGGGACTTAGATCGTGGTCTTAAAGTTTTTGAGGACTACATGAA
rJMSF003B19+          GTGCTATCTACATACAGGGGACTTAGATCGTGGTCTTAAAGTTTTTGAGGACTACATGAA
                      ____________________________________________________________
consensus             GTGCTATCTACATACAGGGGACTTAGATCGTGGTCTTAAAGTTTTTGAGGACTACATGAA
 
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rJMSF020F12+          CTCTGAAAGACCACCCATTATAGAGCTTTATGTGACTCTGATAGAAGGAGCAATGGTTGG
rJMSF042E09+          CTCTGAAAGACCACCCATTATAGAGCTTTATGTGACTCTGATAGAAGGAGCAATGGTTGG
rJMSF003B19+          CTCTGAAAGACCACCCATTATAGAGCTTTATGTGACTCTGATAGAAGGAGCAATGGTTGG
                      ____________________________________________________________
consensus             CTCTGAAAGACCACCCATTATAGAGCTTTATGTGACTCTGATAGAAGGAGCAATGGTTGG
 
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rJMSF020F12+          GTATACTACCAGAGGAATGCAAATTGCTCAGGACACGCTGTTAGCAATGAATCAAAGGAA
rJMSF042E09+          GTATACTACCAGAGGAATGCAAATTGCTCAGGACACGCTGTTAGCAATGAATCAAAGGAA
rJMSF003B19+          GTATACTACCAGAGGAATGCAAATTGCTCAGGACACGCTGTTAGCAATGAATCAAAGGAA
                      ____________________________________________________________
consensus             GTATACTACCAGAGGAATGCAAATTGCTCAGGACACGCTGTTAGCAATGAATCAAAGGAA
 
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rJMSF020F12+          TTTTACCCTGAGCCCAAAGATGGGAACTGATCTCCTCCTTGCAGCTGCTGGTGAAAAGAG
rJMSF042E09+          TTTTACCCTGAGCCCAAAGATGGGAACTGATCTCCTCCTTGCAGCTGCTGGTGAAAAGAG
rJMSF003B19+          TTTTACCCTGAGCCCAAAGATGGGAACTGATCTCCTCCTTGCAGCTGCTGGTGAAAAGAG
                      ____________________________________________________________
consensus             TTTTACCCTGAGCCCAAAGATGGGAACTGATCTCCTCCTTGCAGCTGCTGGTGAAAAGAG
 
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rJMSF020F12+          TGGCGGATATACAGTTGCCAATTTACTTTGGGACTTGATGGTGGGGCGCAATGTTAATAT
rJMSF042E09+          TGGC-GATATACAGTTGCCAATTTACTTTGGGACTTGATGGTGGGGCGCAATGTTAATAT
rJMSF003B19+          TGGCGGATATACAGTTGCCAATTTACTTTGGGACTTGATGGTGGGGCGCAATGTTAATAT
                      ____________________________________________________________
consensus             TGGCGGATATACAGTTGCCAATTTACTTTGGGACTTGATGGTGGGGCGCAATGTTAATAT
 
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rJMSF020F12+          CTCACTTCATGCTGTTGAGGCATATTACCAAGGGCTGAAGGACCGAGAGGTACCAGCAGA
rJMSF042E09+          CTCACTTCATGCTGTTGAGGCATATTACCAAGGGCTGAAGGACCGAGAGGTACCAGCAGA
rJMSF003B19+          CTCACTTCATGCTGTTGAGGCATATTACCAAGGGCTGAAGGACCGAGAGGTACCAGCAGA
                      ____________________________________________________________
consensus             CTCACTTCATGCTGTTGAGGCATATTACCAAGGGCTGAAGGACCGAGAGGTACCAGCAGA
 
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rJMSF020F12+          TGATCCACGGCGGATGCTTGTAGAGAAAACATATAATGATCTGAAAAGAAGGTTTGGAAG
rJMSF042E09+          TGATCCACGGCGGATGCTTGTAGAGAAAACATATAATGATCTGAAAAGAAGGTTTGGAAG
rJMSF003B19+          TGATCCACGGCGGATGCTTGTAGAGAAAACATATAATGATCTGAAAAGAAGGTTTGGAAG
                      ____________________________________________________________
consensus             TGATCCACGGCGGATGCTTGTAGAGAAAACATATAATGATCTGAAAAGAAGGTTTGGAAG
 
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rJMSF020F12+          AAGAACTTACTAGGTAGGAGAGAAGGTGAACTCAAGGAACAGTTGGTCCACTTTTTACCT
rJMSF042E09+          AAGAACTTACTAGGTAGGAGAGAAGGTGAACTCAAGGAACAGTTGGTCCACTTTTTACCT
rJMSF003B19+          AAGAACTTACTAGGTAGGAGAGAAGGTGAACTCAAGGAACAGTTGGTCCACTTTTTACCT
                      ____________________________________________________________
consensus             AAGAACTTACTAGGTAGGAGAGAAGGTGAACTCAAGGAACAGTTGGTCCACTTTTTACCT
 
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rJMSF020F12+          TTATTCTGCTATCATTTGTTTCCTCTTTTTGAACTTGACAAGGCAAGTGCTGTCACTCTA
rJMSF042E09+          TTATTCTGCTATCATTTGTTTCCTCTTTTTGAACTTGACAAGGCAAGTGCTGTCACTCTA
rJMSF003B19+          TTATTCTGCTATCATTTGTTTCCTCTTTTTGAACTTGACAAGGCAAGTGCTGTCACTCTA
                      ____________________________________________________________
consensus             TTATTCTGCTATCATTTGTTTCCTCTTTTTGAACTTGACAAGGCAAGTGCTGTCACTCTA
 
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rJMSF020F12+          GGTGATAGATTGATTTTATGGTTCATACAAGGAAACAACTTTACTTAGGAACACTCCTTT
rJMSF042E09+          GGTGATAGATTGATTTTATGGTTCATACAAGGAAACAACTTTACTTAGGAACACTCCTTT
rJMSF003B19+          GGTGATAGATTGATTTTATGGTTCATACAAGGAAACAACTTTACTTAGGAACACTCCTTT
                      ____________________________________________________________
consensus             GGTGATAGATTGATTTTATGGTTCATACAAGGAAACAACTTTACTTAGGAACACTCCTTT
 
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rJMSF020F12+          TATGGTTCTTTAGAATGAATGTCAT                                   
rJMSF042E09+          TATGGTTCTTTAGAATGAATGTCATTATAATTTTATCATGAATTTCACAGCCTAGC    
rJMSF003B19+          TATGGTTCTTTAGAATGAATGTCATTATAATTTTATCATGAATTTCACAGCCTAGCTGAA
                      ____________________________________________________________
consensus             TATGGTTCTTTAGAATGAATGTCATTATAATTTTATCATGAATTTCACAGCCTAGCTGAA
 
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rJMSF003B19+          AATTGATTTTCCTGGAACTGAACATCAGGATTGTGTCCCATTTGTATGTAGATTTTCAGT
                      ____________________________________________________________
consensus             AATTGATTTTCCTGGAACTGAACATCAGGATTGTGTCCCATTTGTATGTAGATTTTCAGT