| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF002H22 | Sequence | 321 | 013226 (5) | ref|XP_011082747.1| | 9e-32 | PREDICTED: tRNA dimethylallyltransferase 9 [Sesamum indicum] | 755 | 005595 (5) | ref|XP_004294141.2| | 8e-66 | PREDICTED: tRNA dimethylallyltransferase 9 [Fragaria vesca subsp. vesca] |
| JMSF005D13 | Sequence | 335 | 013226 (5) | ref|XP_011082747.1| | 2e-34 | PREDICTED: tRNA dimethylallyltransferase 9 [Sesamum indicum] | 334 | 005595 (5) | |||
| JMSF008L03 | Sequence | 364 | 013226 (5) | ref|XP_011082747.1| | 4e-46 | PREDICTED: tRNA dimethylallyltransferase 9 [Sesamum indicum] | 755 | 005595 (5) | ref|XP_004294141.2| | 5e-75 | PREDICTED: tRNA dimethylallyltransferase 9 [Fragaria vesca subsp. vesca] |
| JMSF038G09 | Sequence | 656 | 013226 (5) | ref|XP_011082747.1| | 7e-45 | PREDICTED: tRNA dimethylallyltransferase 9 [Sesamum indicum] | 881 | 005595 (5) | ref|XP_009587099.1| | 7e-94 | PREDICTED: tRNA dimethylallyltransferase 9 [Nicotiana tomentosiformis] |
| JMSF042D18 | Sequence | 159 | 013226 (5) | 709 | 005595 (5) | ref|XP_004294141.2| | 5e-68 | PREDICTED: tRNA dimethylallyltransferase 9 [Fragaria vesca subsp. vesca] | |||
This contig is upended
. : . : . : . : . : . :
rJMSF038G09+ GGTGTAACAGATACTTCTGACATTAGTTCTTCCAC
____________________________________________________________
consensus GGTGTAACAGATACTTCTGACATTAGTTCTTCCAC
. : . : . : . : . : . :
rJMSF038G09+ TGATGGGCTTCAGCAGAGTAAAGAAAAGGATTTGGACTATGACTTCCTCTGTGTATTTCT
____________________________________________________________
consensus TGATGGGCTTCAGCAGAGTAAAGAAAAGGATTTGGACTATGACTTCCTCTGTGTATTTCT
. : . : . : . : . : . :
rJMSF038G09+ TACTACCCAGAGGCTAGATCTCTATAGATCAATTGATTTCCGGTGTGAAGATATGCTCTT
rJMSF008L03+ GAAGATATGCTCTT
____________________________________________________________
consensus TACTACCCAGAGGCTAGATCTCTATAGATCAATTGATTTCCGGTGTGAAGATATGCTCTT
. : . : . : . : . : . :
rJMSF038G09+ AGAAAATTATGGAGTTCTGTCTGAGGCTAGGGGGCTTCTTGATTT-GGGTCTTCTGCCAA
rJMSF008L03+ AGAAAATTATGGAGTTCTGTCTGAGGCTAGGGGGCTTCTTGATTT-GGGTCTTCTGCCAA
rJMSF042D18+ GGGTCTTCTGCCAA
rJMSF002H22+ GCTAGGGGGCTTCTTGATTTNGGGTCTTCTGCCAA
____________________________________________________________
consensus AGAAAATTATGGAGTTCTGTCTGAGGCTAGGGGGCTTCTTGATTT-GGGTCTTCTGCCAA
. : . : . : . : . : . :
rJMSF038G09+ ACTCAAATTCTGCAAGTCGAGCTATTGGTTATCGGCAAGCTATGGAATACCTCCTGTACT
rJMSF008L03+ ACTCAAATTCTGCAAGTCGAGCTATTGGTTATCGGCAAGCTATGGAATACCTCCTGTACT
rJMSF042D18+ ACTCAAATTCTGCAAGTCGAGCTATTGGTTATCGGCAAGCTATGGAATACCTCCTGTACT
rJMSF002H22+ ACTCAAATTCTGCAAGTCGAGCTATTGGTTATCGGCAAGCTATGGAATACCTCCTGTACT
____________________________________________________________
consensus ACTCAAATTCTGCAAGTCGAGCTATTGGTTATCGGCAAGCTATGGAATACCTCCTGTACT
. : . : . : . : . : . :
rJMSF038G09+ GCAGAGAACAAGGGGGTTCTAGTTCTCCAAGGGACTTTTTTGCCTTTCTGTCTGAATTCC
rJMSF008L03+ GCAGAGAACAAGGGGGTTCTAGTTCTCCAAGGGACTTTTTTGCCTTTCTGTCTGAATTCC
rJMSF042D18+ GCAGAGAACAAGGGGGTTCTAGTTCTCCAAGGGACTTTTTTGCCTTTCTGTCTGAATTCC
rJMSF002H22+ GCAGAGAACAAGGGGGTTCTAGTTCTCCAAGGGACTTTTTTGCCTTTCTGTCTGAATTCC
____________________________________________________________
consensus GCAGAGAACAAGGGGGTTCTAGTTCTCCAAGGGACTTTTTTGCCTTTCTGTCTGAATTCC
. : . : . : . : . : . :
rJMSF038G09+ AGAAAGCATCCAGAAATTTTGCTAAAAGGCAGCTAACATGGTTCCGTAATGAACCACTTT
rJMSF008L03+ AGAAAGCATCCAGAAATTTTGCTAAAAGGCAGCTAACATGGTTCCGTAATGAACCACTTT
rJMSF042D18+ AGAAAGCATCCAGAAATTTTGCTAAAAGGCAGCTAACATGGTTCCGTAATGAACCACTTT
rJMSF002H22+ AGAAAGCATCCAGAAATTTTGCTAAAAGGCAGCTAACATGGTTCCGTAATGAACCACTTT
____________________________________________________________
consensus AGAAAGCATCCAGAAATTTTGCTAAAAGGCAGCTAACATGGTTCCGTAATGAACCACTTT
. : . : . : . : . : . :
rJMSF038G09+ ATCACTGGATTGATGCTTCTAGACCCATGGGAAGTGTGCTTGACTTCATCTATGATTCAT
rJMSF008L03+ ATCACTGGATTGATGCTTCTAGACCCATGGGAAGTGTGCTTGACTTCATCTATGATTCAT
rJMSF042D18+ ATCACTGGATTGATGCTTCTAGACCCATGGGAAGTGTGCTTGACTTCATCTATGATTCAT
rJMSF002H22+ ATCACTGGATTGATGCTTCTAGACCCATGGGAAGTGTGCTTGACTTCATCTATGATTCAT
____________________________________________________________
consensus ATCACTGGATTGATGCTTCTAGACCCATGGGAAGTGTGCTTGACTTCATCTATGATTCAT
. : . : . : . : . : . :
rJMSF038G09+ ATCATAGTCAATCTGGTCATTTGAAGGTTCCTAAATCTCTTTCTGTGAAGAAAGAAATTT
rJMSF008L03+ ATCATAGTCAATCTGGTCATTTGAAGGTTCCTAAATCTCTTTCTGTGAAGAAAGAAATTT
rJMSF042D18+ ATCATAGTCAATCTGGTCATTTGAAGGTTCCTAAATCTCTTTCTGTGAAGAAAGAAATTT
rJMSF002H22+ ATCATAGTCAATCTGGTCATTTGAAGGTTCCTAAATCTCTTTCTGTGAAGAAAGAAATTT
____________________________________________________________
consensus ATCATAGTCAATCTGGTCATTTGAAGGTTCCTAAATCTCTTTCTGTGAAGAAAGAAATTT
. : . : . : . : . : . :
rJMSF038G09+ CAAGCCGACGTGAAGTTGCAGAAATGAAAACCTATCGCCCTAGAAACCAGCACTTCATCG
rJMSF008L03+ CAAGCCGACGTGAAGTTGCAGAAATGAAAACCTATCGCCCTAGAAACCAGCACTTCATCG
rJMSF042D18+ CAAGCCGACGTGAAGTTGCAGAAATGAAAACCTATCGCCCTAGAAACCAGCACTTCATCG
rJMSF005D13+ CTAGAAACCAGCANTTCATCG
rJMSF002H22+ CAAGCCGACGTGAAGTTGCAGAAATGAAAACCTATCGCCCTAGAAACCAGCACTTCATCG
____________________________________________________________
consensus CAAGCCGACGTGAAGTTGCAGAAATGAAAACCTATCGCCCTAGAAACCAGCACTTCATCG
. : . : . : . : . : . :
rJMSF038G09+ GGCGTGAGGATTGCACCCCTGTTCTAAACTGGATTCAGAGCATTTATGCGCGAGAAGCTG
rJMSF008L03+ GGCGTGAGGATTGCACCCCTGTTCTAAACTGGATTCAGAGCATTTATGCGCGAGAAGCTG
rJMSF042D18+ GGCGTGAGGATTGCACCCCTGTTCTAAACTGGATTCAGAGCATTTATGCGCGAGAAGCTG
rJMSF005D13+ GGCGTGAGGATTGCACNCCTGTTGTAANCTGGATTCAGAGCATTTATGCGCGAGAAGCTG
rJMSF002H22+ GGCGTGAGGATTGCACCCCTGTTCTAAACTGGATTCAGAGCATTTATGCGCGAGAAGCTG
____________________________________________________________
consensus GGCGTGAGGATTGCACCCCTGTTCTAAACTGGATTCAGAGCATTTATGCGCGAGAAGCTG
. : . : . : . : . : . :
rJMSF038G09+ CATCTATTTCTTGAATTGCAGCCAGCGGCCTCCTCTTGATGTCATTGAGTCCAAAACATC
rJMSF008L03+ CATCTATTTCTTGAATTGCAGCCAGCGGCCTCCTCTTGATGTCATTGAGTCCAAAACATC
rJMSF042D18+ CATCTATTTCTTGAATTGCAGCCAGCGGCCTCCTCTTGATGTCATTGAGTCCAAAACATC
rJMSF005D13+ CATNTATTTCTTGAATTGCAGCCAGCGGCCTCCTCTTGATGTCATTGAGTCCAAAACATC
rJMSF002H22+ CATCTATTTCTTGAATTGCAGCCAGCGGCCTCCTCTTGATGTCATTGAGTCCAAAACATC
____________________________________________________________
consensus CATCTATTTCTTGAATTGCAGCCAGCGGCCTCCTCTTGATGTCATTGAGTCCAAAACATC
. : . : . : . : . : . :
rJMSF038G09+ AATTGTTCACTCGCTCATGAAGTGATCTCAGACAACAATGAAAAAATGCCATAAGAGAGT
rJMSF008L03+ AATTGTTCACTCGCTCATGAAGTGATCTCAGACAACAATGAAAAAATGCCATAAGAGAGT
rJMSF042D18+ AATTGTTCACTCGCTCATGAAGTGATCTCAGACAACAATGAAAAAATGCCATAAGAGAGT
rJMSF005D13+ AATTGTTCACTCGCTCATGAAGTGATCTCAGACAACAATGAAAAAANGCCATAAGAGAGT
rJMSF002H22+ AATTGTTCACTCGCTCATGAAGTGATCTCAGACAACAATGAAAAAATGCCATAAGAGAGT
____________________________________________________________
consensus AATTGTTCACTCGCTCATGAAGTGATCTCAGACAACAATGAAAAAATGCCATAAGAGAGT
. : . : . : . : . : . :
rJMSF038G09+ GAATCTTAGGAGCCAGATAGAATGGACTGCCAGTAAAACTGCCCACCCCGCGAGTTTAGT
rJMSF008L03+ GAATCTTAGGAGCCAGATAGAATGGACTGCCAGTAAAACTGCCCACCCCGCGAGTTTAGT
rJMSF042D18+ GAATCTTAGGAGCCAGATAGAATGGACTGCCAGTAAAACTGCCCACCCCGCGAGTTTAGT
rJMSF005D13+ GAATCGTAGGAGCCAGATAGAATGGACTGCCAGTAAAACTGCCCACCCCGCGAGTTTAGT
rJMSF002H22+ GAATCTTAGGAGCCAGATAGAATGGACTGCCAGTAAAACTGCCCACCCCGCGAGTTTAGT
____________________________________________________________
consensus GAATCTTAGGAGCCAGATAGAATGGACTGCCAGTAAAACTGCCCACCCCGCGAGTTTAGT
. : . : . : . : . : . :
rJMSF038G09+ TTGTTTAGTTCTGTACTGTATAATATGGATTACTGTATAGGAGATAGGATATGTTCCATA
rJMSF008L03+ TTGTTTAGTTCTGTACTGTATAATATGGATTACTGTATAGGAGATAGGATATGTTCCATA
rJMSF042D18+ TTGTTTAGTTCTGTACTGTATAATATGGATTACTGTATAGGAGATAGGATATGTTCCATA
rJMSF005D13+ TTGTTTAGTTCTGTACTGTATAATATGGANTACNGTATAGGAGATNGGATATGTTCCATA
rJMSF002H22+ TTGTTTAGTTCTGTACTGTATAATATGGATTACTGTATAGGAGATAGGATATGTTCCATA
____________________________________________________________
consensus TTGTTTAGTTCTGTACTGTATAATATGGATTACTGTATAGGAGATAGGATATGTTCCATA
. : . : . : . : . : . :
rJMSF038G09+ CTTCCAT
rJMSF008L03+ CTTCCATTGCTTCTACTTCTTA
rJMSF042D18+ CTTCCATTGCTTCTACTTCTTA
rJMSF005D13+ CTTCCATTGCTTC
rJMSF002H22+ CTTCCATTGCTTCTACTTCTTACATTGTGCAGTGCAGCATCCCCTCATCCCAAAAAAGAT
____________________________________________________________
consensus CTTCCATTGCTTCTACTTCTTACATTGTGCAGTGCAGCATCCCCTCATCCCAAAAAAGAT