Contig 005594:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002F17Sequence389002048 (2)759005594 (2)gb|KDO67501.1|3e-11hypothetical protein CISIN_1g000482mg [Citrus sinensis]
JMSF004E19Sequence410001955 (2)ref|XP_009603250.1|1e-66PREDICTED: RING-H2 finger protein ATL38-like isoform X2 [Nicotiana tomentosifor303005594 (2)ref|XP_009608451.1|7e-12PREDICTED: F-box/WD repeat-containing protein 7-like isoform X1 [Nicotiana tome

Alignment

This contig is upended


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rJMSF004E19+                                   TGACAGCAGCTAGATAGATNTAGCAGCAGCAACAA
                      ____________________________________________________________
consensus                                      TGACAGCAGCTAGATAGATNTAGCAGCAGCAACAA
 
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rJMSF004E19+          GCCACGGTAGACGGTGTTTATCNCACTTCTAGAGCTCTCCGATAGAGATAATTGAAAGAT
                      ____________________________________________________________
consensus             GCCACGGTAGACGGTGTTTATCNCACTTCTAGAGCTCTCCGATAGAGATAATTGAAAGAT
 
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rJMSF004E19+          GGCCGACGNTTCGCCGTCAACGTCGCCGCAAGACGGCGGTACAATCATAACGATTCTCGA
rJMSF002F17+                               GTCGCCGCAAGACGGCGGTACCATCATAACGATTCTCGA
                      ____________________________________________________________
consensus             GGCCGACGNTTCGCCGTCAACGTCGCCGCAAGACGGCGGTACCATCATAACGATTCTCGA
 
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rJMSF004E19+          TGTCGACGCTTTGGTTAACTGCTTGAGCTTCCTTTCCATTCAGGACGTTCTGAATATGGC
rJMSF002F17+          TGTCGACGCTTTGGTTAACTGCTTGAGCTTCCTTTCCATTCAGGACGTTCTGAATATGGC
                      ____________________________________________________________
consensus             TGTCGACGCTTTGGTTAACTGCTTGAGCTTCCTTTCCATTCAGGACGTTCTGAATATGGC
 
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rJMSF004E19+          CATGGCCTCTAAAGNCCTCCAAGCAGCAGCGTTTTCCGACTCTATATGGCTTTCATTCTT
rJMSF002F17+          CATGGCCTCTAAAGACCTCCAAGCAGCAGCGTTTTCCGACTCTATATGGCTTTCATTCTT
                      ____________________________________________________________
consensus             CATGGCCTCTAAAGACCTCCAAGCAGCAGCGTTTTCCGACTCTATATGGCTTTCATTCTT
 
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rJMSF004E19+          CAGAAGTGGCNATATGA                                           
rJMSF002F17+          CAGAAGTGGCAATATGAACGCATCAATGGAAAAGTTGGTGGAGCTGAAAGACCATTTAAG
                      ____________________________________________________________
consensus             CAGAAGTGGCAATATGAACGCATCAATGGAAAAGTTGGTGGAGCTGAAAGACCATTTAAG
 
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rJMSF002F17+          AATTCTTTCAGATTCTGTTTTTTGCTGTCAACTACGGCTGGGGGTTTAGGAATTAACCTT
                      ____________________________________________________________
consensus             AATTCTTTCAGATTCTGTTTTTTGCTGTCAACTACGGCTGGGGGTTTAGGAATTAACCTT
 
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rJMSF002F17+          GCTTGTGATTATATATGACAGGTACTTTAGGACTTATATTACATTTTTCTTTTTTACTTT
                      ____________________________________________________________
consensus             GCTTGTGATTATATATGACAGGTACTTTAGGACTTATATTACATTTTTCTTTTTTACTTT
 
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rJMSF002F17+          TTCTCTTTTCCCTTCGATTGATAAAGTCATGTTCTTTTGTACTTGTGTATGAATTTGTAG
                      ____________________________________________________________
consensus             TTCTCTTTTCCCTTCGATTGATAAAGTCATGTTCTTTTGTACTTGTGTATGAATTTGTAG
 
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rJMSF002F17+          TGTGGGCCACATGTGCGTGCTCATTTCTATTGTCGCTTAAGACATTAATCTCTTTATTGG
                      ____________________________________________________________
consensus             TGTGGGCCACATGTGCGTGCTCATTTCTATTGTCGCTTAAGACATTAATCTCTTTATTGG
 
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rJMSF002F17+          TGTGAGCTTCTTGATCCATGCCAGAAATGAGTTGTGTGCTTATAGATGATTAAATGAATT
                      ____________________________________________________________
consensus             TGTGAGCTTCTTGATCCATGCCAGAAATGAGTTGTGTGCTTATAGATGATTAAATGAATT
 
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rJMSF002F17+          TCCCTAAGAAGTAGGAATATATTAGAATTAGGGAGTAACATATCTGGAAGACTATATTAA
                      ____________________________________________________________
consensus             TCCCTAAGAAGTAGGAATATATTAGAATTAGGGAGTAACATATCTGGAAGACTATATTAA
 
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rJMSF002F17+          TTTCCCTAAGAGTTGTGAGCTTCTTCTCTCTTTTGGTTTACAATCTTTCAGATTCATTAA
                      ____________________________________________________________
consensus             TTTCCCTAAGAGTTGTGAGCTTCTTCTCTCTTTTGGTTTACAATCTTTCAGATTCATTAA
 
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rJMSF002F17+          TTTGAGGACGAAACTATATTACATACAGTATGAATGTGAGATAAAGTTTTTCAATTACTG
                      ____________________________________________________________
consensus             TTTGAGGACGAAACTATATTACATACAGTATGAATGTGAGATAAAGTTTTTCAATTACTG
 
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rJMSF002F17+          AATTTGTTCATGTAGACCTGCTTTCCCTATTGTCCAAGCAAGTGTCAATAATTACCCTAA
                      ____________________________________________________________
consensus             AATTTGTTCATGTAGACCTGCTTTCCCTATTGTCCAAGCAAGTGTCAATAATTACCCTAA