Contig 005593:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF002D23+                      TCTTGGCAAACTTTCTATATATAATATTCATAAGTACAACTTTGAGTT
                      ____________________________________________________________
consensus                         TCTTGGCAAACTTTCTATATATAATATTCATAAGTACAACTTTGAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037B14+                                            GGTGTAATTTACAGAAATATGGTGCT
rJMSF002D23+          GTTCTTNGCAGACATCTTTTTAGCCATGCTGGGGGGTGTAATTTACAGAAATATGGTGCT
                      ____________________________________________________________
consensus             GTTCTTNGCAGACATCTTTTTAGCCATGCTGGGGGGTGTAATTTACAGAAATATGGTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037B14+          TTATAACATATATATGTATTGTTTTTCATCTTCATTTGCCTTTACTGCCCATATTCATGG
rJMSF002D23+          TTATAACATATATATGTATTGTTTTTCATCTTCATTTGCCTTTACTGCCCATATTCATGG
                      ____________________________________________________________
consensus             TTATAACATATATATGTATTGTTTTTCATCTTCATTTGCCTTTACTGCCCATATTCATGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037B14+          GAAAAGAGTAAGCAGCATATTTTAGCATTGTAGCATATAAGTTGGTATACACCAGATTAC
rJMSF002D23+          GAAAAGAGTAAGCAGCATATTTTAGCATTGTAGCATATAAGTTGGTATACACCAGATTAC
                      ____________________________________________________________
consensus             GAAAAGAGTAAGCAGCATATTTTAGCATTGTAGCATATAAGTTGGTATACACCAGATTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037B14+          TACACAAGATGGCCTTTAGAAGCAGTTGAAATTTGTGCCATAGCTCTTTCGGCAGCCTAA
rJMSF002D23+          TACACAAGATGGCCTTTAGAAGCAGTTGAAATTTGTGCCATAGCTCTTTCGGCAGCCTAA
                      ____________________________________________________________
consensus             TACACAAGATGGCCTTTAGAAGCAGTTGAAATTTGTGCCATAGCTCTTTCGGCAGCCTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037B14+          TGATACTTGGTCTACTTTTGTTTTATCATTCATTCCTGACTAACTCCTGCTTAAGGGATT
rJMSF002D23+          TGATACTTGGTCTACTTTTGTTTTATCATTCATTCCTGACTAACTCCTGCTTAAGGGATT
                      ____________________________________________________________
consensus             TGATACTTGGTCTACTTTTGTTTTATCATTCATTCCTGACTAACTCCTGCTTAAGGGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037B14+          CTTCTGTGCAGTTTGTTGAATCAAATGAAGCGCTATCTCTAGATAAGAGGTTCGTCCATC
rJMSF002D23+          CTTCTGTGCAGTTTGTTGAATCAAATGAAGCGCTATCTCTAGATAAGAGGTTCGTCCATC
                      ____________________________________________________________
consensus             CTTCTGTGCAGTTTGTTGAATCAAATGAAGCGCTATCTCTAGATAAGAGGTTCGTCCATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037B14+          TCTTGAAAAGGATACCTTACTATTGGAGTGTCCCCTACGAGTACAGGCGTTCTTTTGGAC
rJMSF002D23+          TCTTGAAAAGGATACCTTACTATTGGAGTGTCCCCTACGAGTACAGGCGTTCTTTTGGAC
                      ____________________________________________________________
consensus             TCTTGAAAAGGATACCTTACTATTGGAGTGTCCCCTACGAGTACAGGCGTTCTTTTGGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037B14+          GCTGTTTTGGTGTTTTCCATTGCCAAACCTCATTGAAGAATGGAAATGGTACTGTAGATG
rJMSF002D23+          GCTGTTTTGGTGTTTTCCATTGCCAAACCTCATTGAAGAATGGAAATGGTACTGTAGATG
                      ____________________________________________________________
consensus             GCTGTTTTGGTGTTTTCCATTGCCAAACCTCATTGAAGAATGGAAATGGTACTGTAGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037B14+          TCCCTTTCGTCGTATTGATTGCAAATGCTGTTGCCAGACTTTTAAACAACCAACAGATGT
rJMSF002D23+          TCCCTTTCGTCGTATTGATTGCAAATGCTGTTGCCAGACTTTTAAACAACCAACAGATGT
                      ____________________________________________________________
consensus             TCCCTTTCGTCGTATTGATTGCAAATGCTGTTGCCAGACTTTTAAACAACCAACAGATGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037B14+          GCAGTTATTTTAGGTTTTGTGTTTAGAGTCTTTAGCTTAAACAGAGATTTGGGGTGCCCC
rJMSF002D23+          GCAGTTATTTTAGGTTTTGTGTTTAGAGTCTTTAGCTTAAACAGAGATTTGGGGTGCCCC
                      ____________________________________________________________
consensus             GCAGTTATTTTAGGTTTTGTGTTTAGAGTCTTTAGCTTAAACAGAGATTTGGGGTGCCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037B14+          CTTGAGATTAGTGCTTCACTGCAACTCACAAAATTTGTGTATTCTGGGAAGAGAATATTC
rJMSF002D23+          CTTGAGATTAGTGCTTCACTGCAACTCACAAAATTTGTGTATTCTGGGAAGAGAATATTC
                      ____________________________________________________________
consensus             CTTGAGATTAGTGCTTCACTGCAACTCACAAAATTTGTGTATTCTGGGAAGAGAATATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037B14+          CCTTGTCC                                                    
rJMSF002D23+          CCTTGTCCATGTTGGCACTGATGTATTCTGTATCATCACTGATAGCAGTTATAGATATAT
                      ____________________________________________________________
consensus             CCTTGTCCATGTTGGCACTGATGTATTCTGTATCATCACTGATAGCAGTTATAGATATAT