Contig 005591:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002A03Sequence298023096emb|CDP02925.1|3e-14unnamed protein product [Coffea canephora]767005591 (2)ref|XP_002325083.1|2e-56hypothetical protein POPTR_0018s10590g [Populus trichocarpa] gb|EEF03648.1| hypo
JMSF003A03Sequence266001657 (14)ref|XP_009596867.1|3e-23PREDICTED: cell division cycle protein 48 homolog [Nicotiana tomentosiformis]471005591 (2)ref|XP_002325083.1|3e-13hypothetical protein POPTR_0018s10590g [Populus trichocarpa] gb|EEF03648.1| hypo

Alignment

This contig is upended


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rJMSF002A03+                       TTCTCCAGCANTGAGCCACTGACTGGTACAGATTTTATTAAATAAAA
                      ____________________________________________________________
consensus                          TTCTCCAGCANTGAGCCACTGACTGGTACAGATTTTATTAAATAAAA
 
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rJMSF002A03+          TAGGTAAGGGTGCCAAGGCTAAAAGGAGGGAGGATGGGTGTCTTTGCAACAAGATCTCCA
                      ____________________________________________________________
consensus             TAGGTAAGGGTGCCAAGGCTAAAAGGAGGGAGGATGGGTGTCTTTGCAACAAGATCTCCA
 
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rJMSF002A03+          CATCGTCCATGCCCTATTGGGCTCACAGTTGCGAAGGTGGAGTCAATACAAGGGAGTACT
                      ____________________________________________________________
consensus             CATCGTCCATGCCCTATTGGGCTCACAGTTGCGAAGGTGGAGTCAATACAAGGGAGTACT
 
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rJMSF002A03+          GTTATGCTTTCTGGCATAGATCTGGTTGATGGCACACATCACTGGAGCAACAGTGCCCGA
                      ____________________________________________________________
consensus             GTTATGCTTTCTGGCATAGATCTGGTTGATGGCACACATCACTGGAGCAACAGTGCCCGA
 
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rJMSF002A03+          TTGGGTAAAGGTGGATAAGCTATTGGCTGTATCTTCTGTTATCTTCTCTGAGGACTTCTC
                      ____________________________________________________________
consensus             TTGGGTAAAGGTGGATAAGCTATTGGCTGTATCTTCTGTTATCTTCTCTGAGGACTTCTC
 
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rJMSF003A03+             TAGTNTGAGTGANTGTTGGTCAATCATGGAAAAGAAGTCGCTCTATAAATCAGCTTG
rJMSF002A03+          CACTAGTCTGAGTGATTGTTGGTCAATCATGGAAAAGAAGTCGCTCTATAAATCAGCTTG
                      ____________________________________________________________
consensus             CACTAGTCTGAGTGATTGTTGGTCAATCATGGAAAAGAAGTCGCTCTATAAATCAGCTTG
 
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rJMSF003A03+          CGAATTCCAATGCTNGATTAAACAANTGCTTTCTTGGGATATACGTTCGGTCTCTCAAAG
rJMSF002A03+          TGAATTCCAATGCTTGATTAAACAAGTGCTTTCTTGGGATATACGTTCGGTCTCTCAAAG
                      ____________________________________________________________
consensus             TGAATTCCAATGCTTGATTAAACAAGTGCTTTCTTGGGATATACGTTCGGTCTCTCAAAG
 
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rJMSF003A03+          AAGNAGACCTCAAATNTCCAGAATGANGACCGATAATGGTATTACAGATTATGACATCCT
rJMSF002A03+          AAGTAGACCTCAAATTTCCAGAATGAAGACCGATAATGGTATTACAGATTATGACATCCT
                      ____________________________________________________________
consensus             AAGTAGACCTCAAATTTCCAGAATGAAGACCGATAATGGTATTACAGATTATGACATCCT
 
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rJMSF003A03+          GGAGCTGGAGAACAGCCCTGATAAAATGTCGGAAGAGAACAGNGAAGAAGTGAACTGTTC
rJMSF002A03+          GGAGCTGGAGAACAGCCCTGATAAAATGTCGGAAGAGAACAGTGAAGAAGTGAACTGTTC
                      ____________________________________________________________
consensus             GGAGCTGGAGAACAGCCCTGATAAAATGTCGGAAGAGAACAGTGAAGAAGTGAACTGTTC
 
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rJMSF003A03+          TNCCAGTGATNCAANGTNTCNCCTTGTNTTGGAAAGCCTCGACGTTTCATACAGAATCGN
rJMSF002A03+          TTCCAGTGATACAATGTATCACCTTGTTTTGGAAAGCCTCGACGTTTCATACAGAATCGA
                      ____________________________________________________________
consensus             TTCCAGTGATACAATGTATCACCTTGTTTTGGAAAGCCTCGACGTTTCATACAGAATCGA
 
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rJMSF003A03+          CTGCACNGGCAATGTTCTNGTTGAGAAAGTAAGCCTTTTGCCTCAATCTGAACTTCGTAG
rJMSF002A03+          CTGCACTGGCAATGTTCTTGTTGAGAAAGTAAGCCTTTTGCCTCAATCTGAACTTCGTAG
                      ____________________________________________________________
consensus             CTGCACTGGCAATGTTCTTGTTGAGAAAGTAAGCCTTTTGCCTCAATCTGAACTTCGTAG
 
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rJMSF003A03+          CGTGNACACTAAAATTTAGTAANGAGAAAAGTATTTTGGTCCTTAAATTGCTAAACCATT
rJMSF002A03+          TGTGGACACTAAAATTTAGTAATGAGAAAAGTATTTTGGTCCTTAAATTGCTAAACCATT
                      ____________________________________________________________
consensus             TGTGGACACTAAAATTTAGTAATGAGAAAAGTATTTTGGTCCTTAAATTGCTAAACCATT
 
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rJMSF003A03+          TTTGTCGTAGCTATATAGCANGTTANTGGGCCGTGGATC                     
rJMSF002A03+          TTTGTCGTAGCTATATAGCATGTTATTGGGCCGTGGATCTTCCATTTGTGTGTTTCATAC
                      ____________________________________________________________
consensus             TTTGTCGTAGCTATATAGCATGTTATTGGGCCGTGGATCTTCCATTTGTGTGTTTCATAC