Contig 005590:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001P16Sequence248009161 (3)732005590 (2)ref|XP_009609702.1|9e-20PREDICTED: 5'-3' exoribonuclease 4-like, partial [Nicotiana tomentosiformis]
JMSF047A03Sequence609009161 (3)ref|XP_010090276.1|4e-545'-3' exoribonuclease 4 [Morus notabilis] gb|EXB39214.1| 5'-3' exoribonuclease 4701005590 (2)ref|XP_009609702.1|3e-15PREDICTED: 5'-3' exoribonuclease 4-like, partial [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF001P16+                                                          CCCTATGAGTTT
                      ____________________________________________________________
consensus                                                             CCCTATGAGTTT
 
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rJMSF047A03+                            TTCAAGGGGCAAGATAGATTTGTACATCAAGATCAGTCCCAC
rJMSF001P16+          CAGGGTTATCGGCAAAATTTCAAGGGGCAAGATAGATTTGTACATCAAGATCAGTCCCAC
                      ____________________________________________________________
consensus             CAGGGTTATCGGCAAAATTTCAAGGGGCAAGATAGATTTGTACATCAAGATCAGTCCCAC
 
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rJMSF047A03+          ACCATCAGGGGTGGAATGTCTGCCTTGACAATTGAAGGTGGTGGTAGAACAAGGCAGCAA
rJMSF001P16+          ACCATCAGGGGTGGAATGTCTGCCTTGACAATTGAAGGTGGTGGTAGAACAAGGCAGCAA
                      ____________________________________________________________
consensus             ACCATCAGGGGTGGAATGTCTGCCTTGACAATTGAAGGTGGTGGTAGAACAAGGCAGCAA
 
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rJMSF047A03+          AATACAGCAATTTCTCCCTCTCCCAGAGTACCAAATTCAGTACAATTGTCTAACATTCAG
rJMSF001P16+          AATACAGCAATTTCTCCCTCTCCCAGAGTACCAAATTCAGTACAATTGTCTAACATTCAG
                      ____________________________________________________________
consensus             AATACAGCAATTTCTCCCTCTCCCAGAGTACCAAATTCAGTACAATTGTCTAACATTCAG
 
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rJMSF047A03+          CCCCCGGCCCCTCCATTTGTGAACAATGTTAATGTTGGTCCACTTCCATCACCGCCTCCT
rJMSF001P16+          CCCCCGGCCCCTCCATTTGTGAACAATGTTAATGTTGGTCCACTTCCATCACCGCCTCCT
                      ____________________________________________________________
consensus             CCCCCGGCCCCTCCATTTGTGAACAATGTTAATGTTGGTCCACTTCCATCACCGCCTCCT
 
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rJMSF047A03+          AGGTGGATCACTAAACCTGTATCAGTATCAAGCGGAGGGATGTACTCCTCAAAGCAGCAA
rJMSF001P16+          AGGTGGATCACTAAACCTGTATCAGTATCAAGCGGAGGGATGTACTCCTCAAAGCAGCAA
                      ____________________________________________________________
consensus             AGGTGGATCACTAAACCTGTATCAGTATCAAGCGGAGGGATGTACTCCTCAAAGCAGCAA
 
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rJMSF047A03+          GAGAACTCAAAAGCAGCAGCAGGGCATGAGAAGCAAGTTAAGATGGTTTATCAGGTCAAA
rJMSF001P16+          GAGAACTCAAAAGCAGCAGCAGGGCATGAGAAGCAAGTTAAGATGGTTTATCAGGTCAAA
                      ____________________________________________________________
consensus             GAGAACTCAAAAGCAGCAGCAGGGCATGAGAAGCAAGTTAAGATGGTTTATCAGGTCAAA
 
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rJMSF047A03+          AACCGCCCAGCCCAGACTCTGCCTGATGCGGGATCAGGACAGTGATGTTTGCTTGCTTGC
rJMSF001P16+          AACCGCCCAGCCCAGACTCTGCCTGATGCGGGATCAGGACAGTGATGTTTGCTTGCTTGC
                      ____________________________________________________________
consensus             AACCGCCCAGCCCAGACTCTGCCTGATGCGGGATCAGGACAGTGATGTTTGCTTGCTTGC
 
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rJMSF047A03+          TTCATTGTTTTTCCTTATTTACAGTTTATATTACAGTTTTTCCTTATGCGGGATCAGAAT
rJMSF001P16+          TTCATTGTTTTTCCTTATTTACAGTTTATATTACAGTTTTTCCTTATGCGGGATCAGAAT
                      ____________________________________________________________
consensus             TTCATTGTTTTTCCTTATTTACAGTTTATATTACAGTTTTTCCTTATGCGGGATCAGAAT
 
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rJMSF047A03+          ATGTGTCCCTGTAACAGTATGTAGAAGAGTATCTATCTAGTAAAGAATGTATGTTCAGAT
rJMSF001P16+          ATGTGTCCCTGTAACAGTATGTAGAAGAGTATCTATCTAGTAAAGAATGTATGTTCAGAT
                      ____________________________________________________________
consensus             ATGTGTCCCTGTAACAGTATGTAGAAGAGTATCTATCTAGTAAAGAATGTATGTTCAGAT
 
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rJMSF047A03+          TTGAAGATGGAGGGAGGGAGGGAGGGAGGAGCTCCAGCAGCATTTTACCTGATTGGAGCC
rJMSF001P16+          TTGAAGATGGAGGGAGGGAGGGAGGGAGGAGCTCCAGCAGCATTTTACCTGATTGGAGCC
                      ____________________________________________________________
consensus             TTGAAGATGGAGGGAGGGAGGGAGGGAGGAGCTCCAGCAGCATTTTACCTGATTGGAGCC
 
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rJMSF047A03+          AGCCAGCCAATTGTAGATCAAGATCCCGGAGGGAGAAAATCCATTACAACAACCCTTGTA
rJMSF001P16+          AGCCAGCCAATTGTAGATCAAGATCCCGGAGGGAGAAAATCCATTACAACAACCCTTGTA
                      ____________________________________________________________
consensus             AGCCAGCCAATTGTAGATCAAGATCCCGGAGGGAGAAAATCCATTACAACAACCCTTGTA
 
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rJMSF047A03+          CAACTTTCCAGTACATTAACGAACAAAAGAGAAAGGATGATAAAAGGTGGAACACACAT 
rJMSF001P16+          CAACTTTCCAGTACATTAACGAACAAAAGAGAAAGGATGATAAAAGGTGGAACACACATC
                      ____________________________________________________________
consensus             CAACTTTCCAGTACATTAACGAACAAAAGAGAAAGGATGATAAAAGGTGGAACACACATC