Contig 005589:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001P04Sequence325005589 (4)emb|CDP02194.1|7e-42unnamed protein product [Coffea canephora]773005589 (4)ref|XP_010273558.1|2e-95PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein [Nelumbo nuc
JMSF028A13Sequence600005589 (4)ref|XP_009625669.1|2e-88PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein [Nicotiana t770005589 (4)ref|XP_010273558.1|2e-104PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein [Nelumbo nuc

Alignment

This contig is upended


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JMSF001P04-                                                 GGGGAAATCAAGTCTCAGGGTT
                      ____________________________________________________________
consensus                                                   GGGGAAATCAAGTCTCAGGGTT
 
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JMSF001P04-           TTGGCCGCCGGTACAATGGGGAAGATATCATACATGAAGCTCAAGGGGAGCCAGAGCCTG
                      ____________________________________________________________
consensus             TTGGCCGCCGGTACAATGGGGAAGATATCATACATGAAGCTCAAGGGGAGCCAGAGCCTG
 
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JMSF001P04-           AGGCTAAGGCTGCTGCTCTCCACCCTCTCGTCGACTCCAATACTCATCGAGGACATACGC
                      ____________________________________________________________
consensus             AGGCTAAGGCTGCTGCTCTCCACCCTCTCGTCGACTCCAATACTCATCGAGGACATACGC
 
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JMSF001P04-           GCCGACGCCACATGGCCCGGCCTACGCCCCCACGAAGTCTCCTTCCTCCGCCTCCTCGAG
                      ____________________________________________________________
consensus             GCCGACGCCACATGGCCCGGCCTACGCCCCCACGAAGTCTCCTTCCTCCGCCTCCTCGAG
 
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JMSF001P04-           AAACTCTTCGACGACTGCGTCGTTGAAATAAACGAAACTGGCACGAAGTTGAAGTACAGG
JMSF028A13-           AAACTCTTCGACGACTGCGTCGTTGAAATAAACGAAACTGGCACGAAGTTGAAGTACAGG
                      ____________________________________________________________
consensus             AAACTCTTCGACGACTGCGTCGTTGAAATAAACGAAACTGGCACGAAGTTGAAGTACAGG
 
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JMSF001P04-           CCGGGAATAGTGATGGGTGGGAAACATTTAGCTCATGATTGTGGCGTCAATCGCGCTATT
JMSF028A13-           CCGGGAATAGTGATGGGTGGGAAACATTTAGCTCATGATTGTGGCGTCAATCGCGCTATT
                      ____________________________________________________________
consensus             CCGGGAATAGTGATGGGTGGGAAACATTTAGCTCATGATTGTGGCGTCAATCGCGCTATT
 
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JMSF001P04-           GGG                                                         
JMSF028A13-           GGGTATTTCATTGAGCCTCTCATCGTGCTTGGCTTGTTCGGGAAGAAGCCTCTTAGTATT
                      ____________________________________________________________
consensus             GGGTATTTCATTGAGCCTCTCATCGTGCTTGGCTTGTTCGGGAAGAAGCCTCTTAGTATT
 
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JMSF028A13-           AGGCTGAAAGGGATTACTAATGACCCAAAAGACCCGTCTATTGATACCTTTAGATCAACC
                      ____________________________________________________________
consensus             AGGCTGAAAGGGATTACTAATGACCCAAAAGACCCGTCTATTGATACCTTTAGATCAACC
 
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JMSF028A13-           ACCTTGCCTATTTTGAAGCTGTTTGGAGTTCCCTCAGAAGGACTGGATTTGAAAATTGAG
                      ____________________________________________________________
consensus             ACCTTGCCTATTTTGAAGCTGTTTGGAGTTCCCTCAGAAGGACTGGATTTGAAAATTGAG
 
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JMSF028A13-           AACAGGGGAGTTGCTCCCAATGGCGGTGGAGAAGTAATTTTGTCAGTCCCCATTGTCCAG
rJMSF028A13+                                                               TGTCCAG
                      ____________________________________________________________
consensus             AACAGGGGAGTTGCTCCCAATGGCGGTGGAGAAGTAATTTTGTCAGTCCCCATTGTCCAG
 
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JMSF028A13-           GATAGTTTAAGAGCAGTTAGCTGGACTGACGTGGGATTGGTGAAGAGGATTANAGGTGTT
rJMSF028A13+          GATAGTTTAAGAGCAGTTAGCTGGACTGACGT-GGATTGGTGAAGAGGATTAGAGGTGTT
                      ____________________________________________________________
consensus             GATAGTTTAAGAGCAGTTAGCTGGACTGACGTGGGATTGGTGAAGAGGATTAGAGGTGTT
 
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JMSF028A13-           TCCTTTTCTACCANANTGTCTGCNCANNTTGANAATACCATGATACNTGCNNCTCNNGNC
rJMSF028A13+          TCCTTTTCTACCAGAGTGTCTGCGCAGTTTGAGAATACCATGATACATGCAGCTCGTGGC
rJMSF001P04+                 CTACCAGAGTGTNTGCGCAGTTTGAGAATACCATGATACATGCAGCTCGTGGC
                      ____________________________________________________________
consensus             TCCTTTTCTACCAGAGTGTCTGCGCAGTTTGAGAATACCATGATACATGCAGCTCGTGGC
 
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JMSF028A13-           ATCTTGAATCCNCTACTTGCTGATGTCC                                
rJMSF028A13+          ATCTTGAATCCACTACTTGCTGATGTCCATATATTTACCGACCATAAAGCTGGTGTACAA
rJMSF001P04+          ATCTTGAATCCACTACTTGCTGATGTCCATATATTTACCGACCATAAAGCTGGTGTACAA
                      ____________________________________________________________
consensus             ATCTTGAATCCACTACTTGCTGATGTCCATATATTTACCGACCATAAAGCTGGTGTACAA
 
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rJMSF028A13+          GCAGGAAAGTCTCCTGGCTATGGGATTTCTCTTGTTGCAGAAACTACTACTGGCTGCTTC
rJMSF001P04+          GCAGGAAAGTCTCCCGGCTATGGGATTTCTCTTGTTGCAGAAACTACTACTGGCTGCTTC
                      ____________________________________________________________
consensus             GCAGGAAAGTCTCCTGGCTATGGGATTTCTCTTGTTGCAGAAACTACTACTGGCTGCTTC
 
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rJMSF028A13+          ATCTCAGCTGACACTGCTGTTTCTTATGCAAGACAAGAAGAAGATGCTGAGATTGGGGAT
rJMSF001P04+          ATCTCAGCTGACACTGCTGTTTCTTATGCAAGACAAGAAGAAGATGCTGAGATTGGGGAT
                      ____________________________________________________________
consensus             ATCTCAGCTGACACTGCTGTTTCTTATGCAAGACAAGAAGAAGATGCTGAGATTGGGGAT
 
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rJMSF028A13+          GAAGATAGCATCGAGTTAACCCCTCCTGTAGATGTTGGTGAGCAAATTGCTTCCGCACTT
rJMSF001P04+          GAAGATAGCATCGAGTTAACCCCTCCTGTAGATGTTGGTGAGCAAATTGCTTCCGCACTT
                      ____________________________________________________________
consensus             GAAGATAGCATCGAGTTAACCCCTCCTGTAGATGTTGGTGAGCAAATTGCTTCCGCACTT
 
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rJMSF028A13+          CTCGCGGAGATTGAACAGGGAGGTGTCGTAGATTCAACACACCAGGGTCTATTGTTTCTT
rJMSF001P04+          CTCGCGGAGATTGAACAGGGAGGTGTCGTAGATTCAACACACCAGGGTCTATTGTTTCTT
                      ____________________________________________________________
consensus             CTCGCGGAGATTGAACAGGGAGGTGTCGTAGATTCAACACACCAGGGTCTATTGTTTCTT
 
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rJMSF028A13+          CTGTGTGCCTTGTGTCCACAAGATGTCTCTAAAGTTGAGGTCGGTAAGCTCTCACCCTAT
rJMSF001P04+          CTGTGTGCCTTGTGTCCACAAGATGTCTCTAAAGTTGAGGTCGGTAAGCTCTCACCCTAT
                      ____________________________________________________________
consensus             CTGTGTGCCTTGTGTCCACAAGATGTCTCTAAAGTTGAGGTCGGTAAGCTCTCACCCTAT
 
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rJMSF028A13+          GCAATAGAGACTTTAAGGCACATCAGAGATTTCTTGGGAGTTAAATTCGTCATCAACCCA
rJMSF001P04+          GCAATAGAGACTTTAAGGCACATCAGAGATTTCTTGGGAGTTAAATTCGTCATCAACCCA
                      ____________________________________________________________
consensus             GCAATAGAGACTTTAAGGCACATCAGAGATTTCTTGGGAGTTAAATTCGTCATCAACCCA
 
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rJMSF028A13+          GAACCCTCGTCGGGGACTGTCATACTTAAGTGCGTTGGATCTGGATTGAAGAACATGTCG
rJMSF001P04+          GAACCCTCGTCGGGGACTGTCATACTTAAGTGCGTTGGATCTGGATTGAAGAACATGTCG
                      ____________________________________________________________
consensus             GAACCCTCGTCGGGGACTGTCATACTTAAGTGCGTTGGATCTGGATTGAAGAACATGTCG
 
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rJMSF028A13+          AGGAAGTTATCATGATGACCAACGGGGCGGAATGTATACTACTGAAGAAGGCCATGGCAA
rJMSF001P04+          AGGAAGTTATCATGATGACCAACGGGGCGGAATGTATACTACTGAAGAAGGCCATGGCAA
                      ____________________________________________________________
consensus             AGGAAGTTATCATGATGACCAACGGGGCGGAATGTATACTACTGAAGAAGGCCATGGCAA
 
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rJMSF028A13+          GAACATGGTTGTGTAATTTGTTACAAATTTTGTAGTATCTAGCTAGAGACCCCTTACCTT
rJMSF001P04+          GAACATGGTTGTGTAATTTGTTACAAATTTTGTAGTATCTAGCTAGAGACCCCTTACCTT
                      ____________________________________________________________
consensus             GAACATGGTTGTGTAATTTGTTACAAATTTTGTAGTATCTAGCTAGAGACCCCTTACCTT
 
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rJMSF028A13+          CCTTATAAGGGGTGGTGAGATCTTAGTTTTAAAGTTGTGCGCTT                
rJMSF001P04+          CCTTATAAGGGGTGGTGAGATCTTAGTTTTAAAGTTGTGCGCTTATAATTTCTTCAAATT
                      ____________________________________________________________
consensus             CCTTATAAGGGGTGGTGAGATCTTAGTTTTAAAGTTGTGCGCTTATAATTTCTTCAAATT
 
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rJMSF001P04+          ATTATTTGCCCTCGTGTTTGAGTTGAATGTCGCAAAATCATCGTGGGTTTTTTTGTTCGT
                      ____________________________________________________________
consensus             ATTATTTGCCCTCGTGTTTGAGTTGAATGTCGCAAAATCATCGTGGGTTTTTTTGTTCGT