Contig 005587:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001M17+                                      TTCAGAAAGAAGCCTTTTGCTGCCAAACCGCC
                      ____________________________________________________________
consensus                                         TTCAGAAAGAAGCCTTTTGCTGCCAAACCGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001L17+             TCTGGCCATAAGAANGAAGCATATTCCNTCACCTTTTTCAAGGTTATTTTCCCATAA
rJMSF001M17+          AGATCTGGCCATAAGAAAGAAGCATATTCCATCACCTTTTTCAAGGTTATTTTCCCATAA
                      ____________________________________________________________
consensus             AGATCTGGCCATAAGAAAGAAGCATATTCCATCACCTTTTTCAAGGTTATTTTCCCATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001L17+          AAAGGAAAGGGGAAAATCATAGAGGCTTTGGGTCTGGTANANGTGAAAGNGGTTTGTACA
rJMSF001M17+          AAAGGAAAGGGGAAAATCATAGAGGCTTTGGGTTTGGTAAATGTGAAAGTGGTTTGTACA
                      ____________________________________________________________
consensus             AAAGGAAAGGGGAAAATCATAGAGGCTTTGGGTTTGGTAAATGTGAAAGTGGTTTGTACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001L17+          GCTTTGGGTTTGGTTTAAGAGGAGTCAGTAGCTTAGTTTTGTGGTTTTGNTCNTCGGGTN
rJMSF001M17+          GCTTTGGGTTTGGTTTAAGAGGAGTCAGTAGCTTAGTTTTGTGGTTTTGTTCTTCGGGTT
                      ____________________________________________________________
consensus             GCTTTGGGTTTGGTTTAAGAGGAGTCAGTAGCTTAGTTTTGTGGTTTTGTTCTTCGGGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001L17+          GTTTTTCNGTTAATTTACAGTTTNTGTGCCTTTTATCTCGTTTCTTTGACGAGTCTTCTC
rJMSF001M17+          GTTTTTCTGTTAATTTACAGTTTTTGTGCCTTTTATCTCGTTTCTTTGACGAGTTTTCTC
                      ____________________________________________________________
consensus             GTTTTTCTGTTAATTTACAGTTTTTGTGCCTTTTATCTCGTTTCTTTGACGAGTTTTCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001L17+          TTTCTCATTTTTATGATGAGTTTTCTCTATCTCGNTTATATGACGAGCTTTNGTATGAAG
rJMSF001M17+          TTTCTCATTTTTATGATGAGTTTTCTCTATCTCGTTTATATGACGAGCTTTTGTATGAAG
                      ____________________________________________________________
consensus             TTTCTCATTTTTATGATGAGTTTTCTCTATCTCGTTTATATGACGAGCTTTTGTATGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001L17+          CTTGAAATGCTAAAAANGGTCATGGCTTTTGTTAACTTCATCCTGGGCAATTTAGAAGAC
rJMSF001M17+          CTTGAAATGCTAAAAATGGTCATGGCTTTTGTTAACTTCATCCTGGGCAATTTAGAAGAC
                      ____________________________________________________________
consensus             CTTGAAATGCTAAAAATGGTCATGGCTTTTGTTAACTTCATCCTGGGCAATTTAGAAGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001L17+          AATGGAAAAGTGCCTCTTCTGAACTCTGATATGAAATTCA                    
rJMSF001M17+          AATGGAAAAGTGCCTCTTCTGAACTCTGATATGAAATTCAATTCAGTTGATAGGCTACCC
                      ____________________________________________________________
consensus             AATGGAAAAGTGCCTCTTCTGAACTCTGATATGAAATTCAATTCAGTTGATAGGCTACCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001M17+          TCTGAGAAATCTCTTAATCCACTGATGTAAGATCGTGGGTTCTCAAGACGGTAATATTGT
                      ____________________________________________________________
consensus             TCTGAGAAATCTCTTAATCCACTGATGTAAGATCGTGGGTTCTCAAGACGGTAATATTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001M17+          CGATGCACCAAAAGATGGAGATGAATACCCAGGTGATGTGCAGAACTTCTGAGATAATCT
                      ____________________________________________________________
consensus             CGATGCACCAAAAGATGGAGATGAATACCCAGGTGATGTGCAGAACTTCTGAGATAATCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001M17+          TGTATATAGTCGGCCAGATCATTGAGGTAGTATTTAAAGAAGCTTTAAGGCCCTTCAAGG
                      ____________________________________________________________
consensus             TGTATATAGTCGGCCAGATCATTGAGGTAGTATTTAAAGAAGCTTTAAGGCCCTTCAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001M17+          AGTTTAGCTTCCAATTTGTAATACAGTTTGCGATTCAAATTTTCTGCATTGTTAGAAAAA
                      ____________________________________________________________
consensus             AGTTTAGCTTCCAATTTGTAATACAGTTTGCGATTCAAATTTTCTGCATTGTTAGAAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001M17+          TTGTTTCTATGCCTGACTATAAGAAATGGCTTACCATTTCACTGATCTTTGATGAATCCC
                      ____________________________________________________________
consensus             TTGTTTCTATGCCTGACTATAAGAAATGGCTTACCATTTCACTGATCTTTGATGAATCCC