Contig 005586:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001L06Sequence389003503 (4)ref|XP_009623718.1|4e-20PREDICTED: ribonuclease II, chloroplastic/mitochondrial isoform X1 [Nicotiana t696005586 (2)ref|XP_009758865.1|5e-44PREDICTED: ribonuclease II, chloroplastic/mitochondrial isoform X4 [Nicotiana s
JMSF037C08Sequence644003503 (4)ref|XP_009623718.1|2e-70PREDICTED: ribonuclease II, chloroplastic/mitochondrial isoform X1 [Nicotiana t697005586 (2)ref|XP_009758865.1|5e-45PREDICTED: ribonuclease II, chloroplastic/mitochondrial isoform X4 [Nicotiana s

Alignment

This contig is upended


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rJMSF037C08+                              CTTCTCAGCTGGTGAACTAGAAGGGATGGCATCTATGATT
rJMSF001L06+                                  TCAGCTGGTGAACTAGAAGGGATGGCATCTATGATT
                      ____________________________________________________________
consensus                                 CTTCTCAGCTGGTGAACTAGAAGGGATGGCATCTATGATT
 
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rJMSF037C08+          AACATGTACACCAGAGTGGTAAGGAGGCTCTGCAACAGCAGTCTTCGTTATTGGGTATTG
rJMSF001L06+          AACATGTACACCAGAGTGGTAAGGAGGCTCTGCAACAGCAGTCTTCGTTATTGGGTATTG
                      ____________________________________________________________
consensus             AACATGTACACCAGAGTGGTAAGGAGGCTCTGCAACAGCAGTCTTCGTTATTGGGTATTG
 
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rJMSF037C08+          GAGTACCTGAGAAGGCAATCAAAAAATACAAAATTCCGTGCTGTAGTCCTCAAATTCATC
rJMSF001L06+          GAGTACCTGAGAAGGCAATCAAAAAATACAAAATTCCGTGCTGTAGTCCTCAAATTCATC
                      ____________________________________________________________
consensus             GAGTACCTGAGAAGGCAATCAAAAAATACAAAATTCCGTGCTGTAGTCCTCAAATTCATC
 
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rJMSF037C08+          AAAGACAGGAATGCATTAATACTCTTGTTGGAGATTGGAACACAAGCTTCTGTTTGGGTG
rJMSF001L06+          AAAGACAGGAATGCATTAATACTCTTGTTGGAGATTGGAACACAAGCTTCTGTTTGGGTG
                      ____________________________________________________________
consensus             AAAGACAGGAATGCATTAATACTCTTGTTGGAGATTGGAACACAAGCTTCTGTTTGGGTG
 
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rJMSF037C08+          TCTACCGGAGTACAAATTGGGGACGAAGTGGATGTTCGAGTTGAAGAAGCTCATCCACGT
rJMSF001L06+          TCTACCGGAGTACAAATTGGGGACGAAGTGGATGTTCGAGTTGAAGAAGCTCATCCACGT
                      ____________________________________________________________
consensus             TCTACCGGAGTACAAATTGGGGACGAAGTGGATGTTCGAGTTGAAGAAGCTCATCCACGT
 
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rJMSF037C08+          GACGACATTCTCTCTCTTAAAGAGGTTCCACGTGCATAACAGTGTTCTTCCCAATATTGA
rJMSF001L06+          GACGACATTCTCTCTCTTAAAGAGGTTCCACGTGCATAACAGTGTTCTTCCCAATATTGA
                      ____________________________________________________________
consensus             GACGACATTCTCTCTCTTAAAGAGGTTCCACGTGCATAACAGTGTTCTTCCCAATATTGA
 
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rJMSF037C08+          TTATGGTAGAGATACAATGTGCAAAAGATTTATCAACCCAACCCAAGCCCAGATGGCCGC
rJMSF001L06+          TTATGGTAGAGATACAATGTGCAAAAGATTTATCAACCCAACCCAAGCCCAGATGGCCGC
                      ____________________________________________________________
consensus             TTATGGTAGAGATACAATGTGCAAAAGATTTATCAACCCAACCCAAGCCCAGATGGCCGC
 
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rJMSF037C08+          AAGAGTTGGTAATACATAGCCTTAAATCGCTGGCATCATTTTGCTGAGATCATTGACCTC
rJMSF001L06+          AAGAGTTGGTAATACATAGCCTTAAATCGCTGGCATCATTTTGCTGAGATCATTGACCTC
                      ____________________________________________________________
consensus             AAGAGTTGGTAATACATAGCCTTAAATCGCTGGCATCATTTTGCTGAGATCATTGACCTC
 
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rJMSF037C08+          AAACAACTATCAAAGCTCTTGCAATGAGGCAATGCAGATGCAACCAATGTGGTGGCGGTT
rJMSF001L06+          AAACAACTATCAAAGCTCTTGCAATGAGGCAATGCAGATGCAACCAATGTGGTGGCGGTT
                      ____________________________________________________________
consensus             AAACAACTATCAAAGCTCTTGCAATGAGGCAATGCAGATGCAACCAATGTGGTGGCGGTT
 
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rJMSF037C08+          CTCCACCCATCATTTTTGACTGATCATTAATGCTCCATCCCCGAAGGTTATATGCACTGT
rJMSF001L06+          CTCCACCCATCATTTTTGACTGATCATTAATGCTCCATCCCCGAAGGTTATATGCACTGT
                      ____________________________________________________________
consensus             CTCCACCCATCATTTTTGACTGATCATTAATGCTCCATCCCCGAAGGTTATATGCACTGT
 
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rJMSF037C08+          AATCAGTCCTCCCATGGTATTGGAGTTCATAAGCTAGCTAGCTATGGCCTTGGCGCATAT
rJMSF001L06+          AATCAGTCCTCCCATGGTATTGGAGTTCATAAGCTAGCTAGCTATGGCCTTGGCGCATAT
                      ____________________________________________________________
consensus             AATCAGTCCTCCCATGGTATTGGAGTTCATAAGCTAGCTAGCTATGGCCTTGGCGCATAT
 
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rJMSF037C08+          TGGTGGTTGCCAAAATTCAAGGAAATTCTGTCCATTTTGTATAATG              
rJMSF001L06+          TGGTGGTTGCCAAAATTCAAGGAAATTCTGTCCATTTTGTATAATGAAATCCAACTCTTA
                      ____________________________________________________________
consensus             TGGTGGTTGCCAAAATTCAAGGAAATTCTGTCCATTTTGTATAATGAAATCCAACTCTTA