Contig 005586:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001L06Sequence389003503 (4)ref|XP_009623718.1|4e-20PREDICTED: ribonuclease II, chloroplastic/mitochondrial isoform X1 [Nicotiana t696005586 (2)ref|XP_009758865.1|5e-44PREDICTED: ribonuclease II, chloroplastic/mitochondrial isoform X4 [Nicotiana s
JMSF037C08Sequence644003503 (4)ref|XP_009623718.1|2e-70PREDICTED: ribonuclease II, chloroplastic/mitochondrial isoform X1 [Nicotiana t697005586 (2)ref|XP_009758865.1|5e-45PREDICTED: ribonuclease II, chloroplastic/mitochondrial isoform X4 [Nicotiana s

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF037C08+ CTTCTCAGCTGGTGAACTAGAAGGGATGGCATCTATGATT
rJMSF001L06+ TCAGCTGGTGAACTAGAAGGGATGGCATCTATGATT
                      ____________________________________________________________
consensus CTTCTCAGCTGGTGAACTAGAAGGGATGGCATCTATGATT
 
. : . : . : . : . : . :
rJMSF037C08+ AACATGTACACCAGAGTGGTAAGGAGGCTCTGCAACAGCAGTCTTCGTTATTGGGTATTG
rJMSF001L06+ AACATGTACACCAGAGTGGTAAGGAGGCTCTGCAACAGCAGTCTTCGTTATTGGGTATTG
                      ____________________________________________________________
consensus AACATGTACACCAGAGTGGTAAGGAGGCTCTGCAACAGCAGTCTTCGTTATTGGGTATTG
 
. : . : . : . : . : . :
rJMSF037C08+ GAGTACCTGAGAAGGCAATCAAAAAATACAAAATTCCGTGCTGTAGTCCTCAAATTCATC
rJMSF001L06+ GAGTACCTGAGAAGGCAATCAAAAAATACAAAATTCCGTGCTGTAGTCCTCAAATTCATC
                      ____________________________________________________________
consensus GAGTACCTGAGAAGGCAATCAAAAAATACAAAATTCCGTGCTGTAGTCCTCAAATTCATC
 
. : . : . : . : . : . :
rJMSF037C08+ AAAGACAGGAATGCATTAATACTCTTGTTGGAGATTGGAACACAAGCTTCTGTTTGGGTG
rJMSF001L06+ AAAGACAGGAATGCATTAATACTCTTGTTGGAGATTGGAACACAAGCTTCTGTTTGGGTG
                      ____________________________________________________________
consensus AAAGACAGGAATGCATTAATACTCTTGTTGGAGATTGGAACACAAGCTTCTGTTTGGGTG
 
. : . : . : . : . : . :
rJMSF037C08+ TCTACCGGAGTACAAATTGGGGACGAAGTGGATGTTCGAGTTGAAGAAGCTCATCCACGT
rJMSF001L06+ TCTACCGGAGTACAAATTGGGGACGAAGTGGATGTTCGAGTTGAAGAAGCTCATCCACGT
                      ____________________________________________________________
consensus TCTACCGGAGTACAAATTGGGGACGAAGTGGATGTTCGAGTTGAAGAAGCTCATCCACGT
 
. : . : . : . : . : . :
rJMSF037C08+ GACGACATTCTCTCTCTTAAAGAGGTTCCACGTGCATAACAGTGTTCTTCCCAATATTGA
rJMSF001L06+ GACGACATTCTCTCTCTTAAAGAGGTTCCACGTGCATAACAGTGTTCTTCCCAATATTGA
                      ____________________________________________________________
consensus GACGACATTCTCTCTCTTAAAGAGGTTCCACGTGCATAACAGTGTTCTTCCCAATATTGA
 
. : . : . : . : . : . :
rJMSF037C08+ TTATGGTAGAGATACAATGTGCAAAAGATTTATCAACCCAACCCAAGCCCAGATGGCCGC
rJMSF001L06+ TTATGGTAGAGATACAATGTGCAAAAGATTTATCAACCCAACCCAAGCCCAGATGGCCGC
                      ____________________________________________________________
consensus TTATGGTAGAGATACAATGTGCAAAAGATTTATCAACCCAACCCAAGCCCAGATGGCCGC
 
. : . : . : . : . : . :
rJMSF037C08+ AAGAGTTGGTAATACATAGCCTTAAATCGCTGGCATCATTTTGCTGAGATCATTGACCTC
rJMSF001L06+ AAGAGTTGGTAATACATAGCCTTAAATCGCTGGCATCATTTTGCTGAGATCATTGACCTC
                      ____________________________________________________________
consensus AAGAGTTGGTAATACATAGCCTTAAATCGCTGGCATCATTTTGCTGAGATCATTGACCTC
 
. : . : . : . : . : . :
rJMSF037C08+ AAACAACTATCAAAGCTCTTGCAATGAGGCAATGCAGATGCAACCAATGTGGTGGCGGTT
rJMSF001L06+ AAACAACTATCAAAGCTCTTGCAATGAGGCAATGCAGATGCAACCAATGTGGTGGCGGTT
                      ____________________________________________________________
consensus AAACAACTATCAAAGCTCTTGCAATGAGGCAATGCAGATGCAACCAATGTGGTGGCGGTT
 
. : . : . : . : . : . :
rJMSF037C08+ CTCCACCCATCATTTTTGACTGATCATTAATGCTCCATCCCCGAAGGTTATATGCACTGT
rJMSF001L06+ CTCCACCCATCATTTTTGACTGATCATTAATGCTCCATCCCCGAAGGTTATATGCACTGT
                      ____________________________________________________________
consensus CTCCACCCATCATTTTTGACTGATCATTAATGCTCCATCCCCGAAGGTTATATGCACTGT
 
. : . : . : . : . : . :
rJMSF037C08+ AATCAGTCCTCCCATGGTATTGGAGTTCATAAGCTAGCTAGCTATGGCCTTGGCGCATAT
rJMSF001L06+ AATCAGTCCTCCCATGGTATTGGAGTTCATAAGCTAGCTAGCTATGGCCTTGGCGCATAT
                      ____________________________________________________________
consensus AATCAGTCCTCCCATGGTATTGGAGTTCATAAGCTAGCTAGCTATGGCCTTGGCGCATAT
 
. : . : . : . : . : . :
rJMSF037C08+ TGGTGGTTGCCAAAATTCAAGGAAATTCTGTCCATTTTGTATAATG
rJMSF001L06+ TGGTGGTTGCCAAAATTCAAGGAAATTCTGTCCATTTTGTATAATGAAATCCAACTCTTA
                      ____________________________________________________________
consensus TGGTGGTTGCCAAAATTCAAGGAAATTCTGTCCATTTTGTATAATGAAATCCAACTCTTA