Contig 005584:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001F17Sequence466005584 (2)ref|NP_001278852.1|6e-29homeobox protein knotted-1-like 1-like [Solanum tuberosum] gb|AHX00580.1| petros618005584 (2)ref|XP_009598925.1|2e-30PREDICTED: homeobox protein knotted-1-like 1 isoform X2 [Nicotiana tomentosifor

Alignment

This contig is upended


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JMSF001F17-                                                     AGAGGGAGAAAAGCATAT
rJMSF001F17+                                                    AGAGGGAGAAAAGCATAT
                      ____________________________________________________________
consensus                                                       AGAGGGAGAAAAGCATAT
 
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JMSF001F17-           TTAGTAAAACCTAGGTTTTGGCTAAAATACACAAGAGATTGGCCATATATGGAAACTGGG
rJMSF001F17+          TTAGTAAAACCTAGGTTTTGGCTAAAATACACAAGAGATTGGCCATATATGGAAACTGGG
                      ____________________________________________________________
consensus             TTAGTAAAACCTAGGTTTTGGCTAAAATACACAAGAGATTGGCCATATATGGAAACTGGG
 
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JMSF001F17-           AATGAAGAAAAGGAGTGCATTTTTGGAGAAGTAGAAGATGATGATGATATTGATATTGAT
rJMSF001F17+          AATGAAGAAAAGGAGTGCATTTTTGGAGAAGTAGAAGATGATGATGATATTGATATTGAT
                      ____________________________________________________________
consensus             AATGAAGAAAAGGAGTGCATTTTTGGAGAAGTAGAAGATGATGATGATATTGATATTGAT
 
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JMSF001F17-           GATGATGATGAGGATGAGGATTCACTCAAGAAGAAGATTGCTTCCCATGCTTTATATGGC
rJMSF001F17+          GATGATGATGAGGATGAGGATTCACTCAAGAAGAAGATTGCTTCCCATGCTTTATATGGC
                      ____________________________________________________________
consensus             GATGATGATGAGGATGAGGATTCACTCAAGAAGAAGATTGCTTCCCATGCTTTATATGGC
 
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JMSF001F17-           CTCCTTGTTGACACTCACATTGACTGCTTAAAGCTTTGTTTGGGAATGGCGGATCAGATT
rJMSF001F17+          CTCCTTGTTGACACTCACATTGACTGCTTAAAGCTTTGTTTGGGAATGGCGGATCAGATT
                      ____________________________________________________________
consensus             CTCCTTGTTGACACTCACATTGACTGCTTAAAGCTTTGTTTGGGAATGGCGGATCAGATT
 
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JMSF001F17-           GAAGAAAAGTCATCCAAGTATGAGCCAAATAAAGCAGCTAATTGCCAAATAATCAGCTCA
rJMSF001F17+          GAAGAAAAGTCATCCAAGTATGAGCCAAATAAAGCAGCTAATTGCCAAATAATCAGCTCA
                      ____________________________________________________________
consensus             GAAGAAAAGTCATCCAAGTATGAGCCAAATAAAGCAGCTAATTGCCAAATAATCAGCTCA
 
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JMSF001F17-           CGCAAAAGTGATCAACTGGAGTTGGACAATTTCATGGAAGCATATTGCATGGCACTAAGC
rJMSF001F17+          CGCAAAAGTGATCAACTGGAGTTGGACAATTTCATGGAAGCATATTGCATGGCACTAAGC
                      ____________________________________________________________
consensus             CGCAAAAGTGATCAACTGGAGTTGGACAATTTCATGGAAGCATATTGCATGGCACTAAGC
 
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JMSF001F17-           AAGCTAAAAGAAGTAATGAAGGAACCACACCAAGAGACCATGACCTTCATCAATCATATG
rJMSF001F17+          AAGCTAAAAGAAGTAATGAAGGAACCACACCAAGAGACCATGACCTTCATCAATCATATG
                      ____________________________________________________________
consensus             AAGCTAAAAGAAGTAATGAAGGAACCACACCAAGAGACCATGACCTTCATCAATCATATG
 
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JMSF001F17-           CATTCTCAGCTTGAGGAGCTTATGGAAG                                
rJMSF001F17+          CATTCTCAGCTTGAGGAGCTTATGGAAGCCCCTTCAATGTCCCAATCTCATCTTGCGAAG
                      ____________________________________________________________
consensus             CATTCTCAGCTTGAGGAGCTTATGGAAGCCCCTTCAATGTCCCAATCTCATCTTGCGAAG
 
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rJMSF001F17+          ACTACCTAGCTACTAATATATACCTACCTTATATTATATATATGTATCTACCATTTCATA
                      ____________________________________________________________
consensus             ACTACCTAGCTACTAATATATACCTACCTTATATTATATATATGTATCTACCATTTCATA
 
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rJMSF001F17+          TCATCATCAATGTCTATCATTTTCAACCTTAAACTGATTAGCCTGTTATTGTTGATCGAG
                      ____________________________________________________________
consensus             TCATCATCAATGTCTATCATTTTCAACCTTAAACTGATTAGCCTGTTATTGTTGATCGAG