Contig 005576:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF025M19Sequence503008721 (8)ref|XP_009623916.1|3e-59PREDICTED: strictosidine synthase 3-like [Nicotiana tomentosiformis]108005576 (4)
JMFF048P19Sequence318022786ref|XP_006340314.1|9e-13PREDICTED: adipocyte plasma membrane-associated protein-like [Solanum tuberosum282005576 (4)
JMFF051K24Sequence536008721 (8)ref|XP_009623916.1|1e-80PREDICTED: strictosidine synthase 3-like [Nicotiana tomentosiformis]498005576 (4)ref|XP_009623916.1|3e-33PREDICTED: strictosidine synthase 3-like [Nicotiana tomentosiformis]
JMFF051O03Sequence628008721 (8)ref|XP_006340314.1|5e-92PREDICTED: adipocyte plasma membrane-associated protein-like [Solanum tuberosum513005576 (4)ref|XP_002513740.1|1e-54strictosidine synthase, putative [Ricinus communis] gb|EEF48687.1| strictosidine

Alignment

This contig is upended


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rJMFF051O03+                     CCTGACAACGTTAGAACTAACGAAAGGGGTGAATTCTGGGTAGCAGTCC
                      ____________________________________________________________
consensus                        CCTGACAACGTTAGAACTAACGAAAGGGGTGAATTCTGGGTAGCAGTCC
 
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rJMFF051O03+          ACTGTCGTCGAACATTGTACAGTTACATATGCAGTGTGTACCCGAAACTTAGGAAATTCT
rJMFF051K24+                                                             GGAAATTCT
                      ____________________________________________________________
consensus             ACTGTCGTCGAACATTGTACAGTTACATATGCAGTGTGTACCCGAAACTTAGGAAATTCT
 
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rJMFF051O03+          TGCTGAAGCTTCCGATTTTTGCAAAGCTGCATTACCTGATGCACATCGGGGGTCACCTTC
rJMFF051K24+          TGCTGAAGCTTCCGATTTCTGCAAAGCTGCATTACCTGATGCACATCGGGGGTCACCTTC
                      ____________________________________________________________
consensus             TGCTGAAGCTTCCGATTTTTGCAAAGCTGCATTACCTGATGCACATCGGGGGTCACCTTC
 
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rJMFF051O03+          ATGCAATTGCGGTGAAGTATAGCCCAGAAGGTAAGGTTTTGCAAGTTTTGGAAGACAGAC
rJMFF051K24+          ATGCAATCGCGGTGAAGTATAGCCCAGAAGGTAAGGTTCTGCAAGTTTTGGAAGACAGAC
                      ____________________________________________________________
consensus             ATGCAATTGCGGTGAAGTATAGCCCAGAAGGTAAGGTTTTGCAAGTTTTGGAAGACAGAC
 
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rJMFF051O03+          CAGGGAAAGTTGTGAGGGCTATTAGTGAGGTGGAGGAGAGGGATGGCAAACTGTGGATGG
rJMFF048P19+                                                                 GATGG
rJMFF051K24+          CAGGGAAAGTTGTGAGGGCTATTAGTGAGGTGGAGGAGAAGGATGGCAAACTGTGGATGG
                      ____________________________________________________________
consensus             CAGGGAAAGTTGTGAGGGCTATTAGTGAGGTGGAGGAGAGGGATGGCAAACTGTGGATGG
 
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rJMFF051O03+          GCAGTGTCTTAATGTTTGGTATAGCAGTTTACAAGTTGGAGTAGTGAAGCACAGATAATT
rJMFF048P19+          GCAGTGTCTTAATGTCTGGTATAGCAGTTTACAAGTTGGAGTAGTGAAGCACAGATAATT
rJMFF051K24+          GCAGTGTCTTAATGTCTGGTATAGCAGTTTACAAGTTGGAGTAGTGAAGCACAGATAATT
                      ____________________________________________________________
consensus             GCAGTGTCTTAATGTCTGGTATAGCAGTTTACAAGTTGGAGTAGTGAAGCACAGATAATT
 
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rJMFF051O03+          GCCTCTTTCATTTCATCAATTTCAGA                                  
rJMFF048P19+          GCCTCTTTCATTTCATCAATTTCAGAATTATTATTATTATTATTATTATTATTATTATTA
rJMFF051K24+          GCCTCTTTCATTTCATCAATTTCAGAATTATTATTATTATTATTATTATTATTATTATTA
                      ____________________________________________________________
consensus             GCCTCTTTCATTTCATCAATTTCAGAATTATTATTATTATTATTATTATTATTATTATTA
 
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rJMFF048P19+          TTTTTTTTTTTTTTTAAAACTCTGTTTAGTAGTTAGTTGTGTTGAGAACTTCAATGGCTG
rJMFF025M19+                          AAACTCTGTTTAGTAGTTAGTTGTGTTGAGAACTTCAATGGCTG
rJMFF051K24+          -TTTTTTTTTTTTTTAAAACTCTGTTTAGTAGTTAGTTGTGTTGAGAACTTCAATGGCTG
                      ____________________________________________________________
consensus             TTTTTTTTTTTTTTTAAAACTCTGTTTAGTAGTTAGTTGTGTTGAGAACTTCAATGGCTG
 
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rJMFF048P19+          TTCTGTATTCCCTATTATTTTCCCAATTCTAAGTATATGATGATTGCATACGATGTAACG
rJMFF025M19+          TTCNGTATTCCCTATTATTTTCCCAATTNTAAGTATATGA                    
rJMFF051K24+          TTCTGTATTCCCTATTATTTTCCCAATTCTAAGTATATGATGATTGCATACGATGTAACG
                      ____________________________________________________________
consensus             TTCTGTATTCCCTATTATTTTCCCAATTCTAAGTATATGATGATTGCATACGATGTAACG
 
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rJMFF048P19+          ATTTTCCTAATATAACTTTAGGATTACAAGTTGTTAT                       
rJMFF051K24+          ATTTTCCTAATATAACTTTAGGATTACAAGTTGTTATAATATTAAGGTGTTTGTTACTCC
                      ____________________________________________________________
consensus             ATTTTCCTAATATAACTTTAGGATTACAAGTTGTTATAATATTAAGGTGTTTGTTACTCC