Contig 005574:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027F15Sequence520010599 (2)emb|CDO96633.1|4e-55spermine synthase [Ipomoea batatas]793005574 (3)emb|CDO96633.1|3e-113spermine synthase [Ipomoea batatas]
JMFF051F24Sequence526005574 (3)ref|XP_010671488.1|4e-27PREDICTED: spermine synthase isoform X2 [Beta vulgaris subsp. vulgaris]
JMSF010A18Sequence225010599 (2)763005574 (3)emb|CDO96633.1|1e-111spermine synthase [Ipomoea batatas]

Alignment

This contig is upended


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rJMSF010A18+                                          CATTTGTGAGATAGACAAAATGGTTATA
                      ____________________________________________________________
consensus                                             CATTTGTGAGATAGACAAAATGGTTATA
 
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rJMSF010A18+          GATGTTAGCAAAAAATTCTTTCCAGAGTTAGCTGTCGGCTTTGAGGACCCCCGAGT-CAA
rJMFF027F15+                            TTTCCAGAGTTAGCTGTCGGCTTTGAGGACCCCCGAGTCCAA
                      ____________________________________________________________
consensus             GATGTTAGCAAAAAATTCTTTCCAGAGTTAGCTGTCGGCTTTGAGGACCCCCGAGTCCAA
 
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rJMSF010A18+          ACTTCATGTTGGTGATGCTGTGGATTTTTTAAGGCATGCCCCTGAAGGAAAGTATGATGC
rJMFF027F15+          ACTTCATGTTGGTGATGCTGTGGATTTTTTAAGGCATGCCCCTGAAGGAAAGTATGATGC
                      ____________________________________________________________
consensus             ACTTCATGTTGGTGATGCTGTGGATTTTTTAAGGCATGCCCCTGAAGGAAAGTATGATGC
 
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rJMSF010A18+          AATTATAGTTGACTCATCGGATCCTGTTGGTCCTGCCCAGGAACTGGTAGAAAAACCATT
rJMFF027F15+          AATTATAGTTGACTCATCGGATCCTGTTGGTCCTGCCCAGGAACTGGTAGAAAAACCATT
                      ____________________________________________________________
consensus             AATTATAGTTGACTCATCGGATCCTGTTGGTCCTGCCCAGGAACTGGTAGAAAAACCATT
 
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rJMSF010A18+          TTTTGAGACATTAGCTAGAGCATTAAGACCTGGTGGTGTTCTTTGCAACATGGCAGAGAG
rJMFF027F15+          TTTTGAGACATTAGCTAGAGCATTAAGACCTGGTGGTGTTCTTTGCAACATGGCAGAGAG
                      ____________________________________________________________
consensus             TTTTGAGACATTAGCTAGAGCATTAAGACCTGGTGGTGTTCTTTGCAACATGGCAGAGAG
 
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rJMSF010A18+          TATGTGGCTTCACACACATCTGATTCAGGATATTATTGCTATTTGCCGTGAAACATTTAA
rJMFF027F15+          TATGTGGCTTCACACACATCTGATTCAGGATATTATTGCTATTTGCCGTGAAACATTTAA
                      ____________________________________________________________
consensus             TATGTGGCTTCACACACATCTGATTCAGGATATTATTGCTATTTGCCGTGAAACATTTAA
 
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rJMSF010A18+          GGGTTCCGTTCACTATGCATGGACCAGTGTTCCTACATATCCAAGTGGTGTTATTGGGTT
rJMFF027F15+          GGGTTCCGTTCACTATGCATGGACCAGTGTTCCTACATATCCAAGTGGTGTTATTGGGTT
rJMFF051F24+                       TATGCATGGACCAGTGTTCCTACATATCCAAGTGGTGTTATTGGGTT
                      ____________________________________________________________
consensus             GGGTTCCGTTCACTATGCATGGACCAGTGTTCCTACATATCCAAGTGGTGTTATTGGGTT
 
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rJMSF010A18+          TGTGTTATGCTCAACTGAAGGCCCGCCTGTTGATTTTTTAAACCCAATCAATCCCATTGA
rJMFF027F15+          TGTGTTATGCTCAACTGAAGGCCCGCCTGTTGATTTTTTAAACCCAATCAATCCCATTGA
rJMFF051F24+          TGTGTTATGCTCAACTGAAGGCCCGCCTGTTGA-TTTTTAAACCCAATCAATCCCATTGA
                      ____________________________________________________________
consensus             TGTGTTATGCTCAACTGAAGGCCCGCCTGTTGATTTTTTAAACCCAATCAATCCCATTGA
 
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rJMSF010A18+          AAAGCTTGATGGAGCGCTTCAATATCGCAGGGAACTAAGG-TTTACAATTCCGAGGTTCA
rJMFF027F15+          AAAGCTTGATGGAGCGCTTCAATATCGCAGGGAACTAAGGTTTTACAATTCCGAGGTTCA
rJMFF051F24+          AAAGCTTGATGGAGCGCTTCAATATCGCAGGGAACTAAGGTTTTACAATTCCGAGGTTCA
                      ____________________________________________________________
consensus             AAAGCTTGATGGAGCGCTTCAATATCGCAGGGAACTAAGGTTTTACAATTCCGAGGTTCA
 
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rJMSF010A18+          TCGAGCTGCATTTGCCTTGCCATCTTTTGTAAAGCGAGAGGTGAGCTGTCTGCGAGATGT
rJMFF027F15+          TCGAGCTGCATTTGCCTTGCCATCTTTTGTAAAGCGAGAGGTGAGCTGTCTGCGAGATGT
rJMFF051F24+          TCGAGCTGCATTTGCCTTGCCATCTTTTGTAAAGCGAGAGGTGAGCTGTCTGCGAGATGT
                      ____________________________________________________________
consensus             TCGAGCTGCATTTGCCTTGCCATCTTTTGTAAAGCGAGAGGTGAGCTGTCTGCGAGATGT
 
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rJMSF010A18+          CCCGCCTGCAACCGCGGTACATACTTAGTAGTTTGATTTTTACTGACTACTAATCCATTC
rJMFF027F15+          CCCGCCTGCAACCGCGGTACATACTTAGTAGTTTGATTTTTACTGACTACTAATCCATTC
rJMFF051F24+          CCCGCCTGCAACCGCGGTACATACTTAGTAGTTTGATTTTTACTGACTACTAATCCATTC
                      ____________________________________________________________
consensus             CCCGCCTGCAACCGCGGTACATACTTAGTAGTTTGATTTTTACTGACTACTAATCCATTC
 
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rJMSF010A18+          CCATGTTATTTGGAGCTACACGAGAATGTTAAGAGTACTGATCGGACTTTTAGATAAGCA
rJMFF027F15+          CCATGTTATTTGGAGCTACACGAGAATGTTAAGAGTACTGATCGGACTTTTAGATAAGCA
rJMFF051F24+          CCATGTTATTTGGAGCTACACGAGAATGTTAAGAGTACTGATCGGACTTTTAGATAAGCA
                      ____________________________________________________________
consensus             CCATGTTATTTGGAGCTACACGAGAATGTTAAGAGTACTGATCGGACTTTTAGATAAGCA
 
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rJMSF010A18+          GTCGAAGCAAGCTTAGACGCTGCAATGACTCTATGTATTAGGTGTTTGATTGGCATATAA
rJMFF027F15+          GTCGAAACAAGCTTAGACGCTGCAATGACTCTATGTATTAGGTGTTTGATTGGCATATAA
rJMFF051F24+          GTCGAAACAAGCTTAGACGCTGCAATGACTCTATGTATTAGGTGTTTGATTGGCATATAA
                      ____________________________________________________________
consensus             GTCGAAACAAGCTTAGACGCTGCAATGACTCTATGTATTAGGTGTTTGATTGGCATATAA
 
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rJMSF010A18+          GCGGGTGCGT                                                  
rJMFF027F15+          GCGGGTGCGTTGGAATCTTCTAAATACTGCGATGTCTATTGATAAATTTGTGATTCAGCA
rJMFF051F24+          GCGGGTGCGTTGGAATCTTCTAAATACTGCGATGTCTATTGATAAATTTGTGATTCAGCA
                      ____________________________________________________________
consensus             GCGGGTGCGTTGGAATCTTCTAAATACTGCGATGTCTATTGATAAATTTGTGATTCAGCA
 
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rJMFF027F15+          ACACTATATTGCACTGCTCTTCTCAGAAAGT                             
rJMFF051F24+          ACACTATATTGCACTGCTCTTCTCAGAAAGTGCAGCATTATGAATTTTATTGGTGCTGGG
                      ____________________________________________________________
consensus             ACACTATATTGCACTGCTCTTCTCAGAAAGTGCAGCATTATGAATTTTATTGGTGCTGGG