Contig 005572:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF051D22Sequence573005572 (4)ref|XP_009795895.1|6e-27PREDICTED: HVA22-like protein e isoform X1 [Nicotiana sylvestris] ref|XP_0097958514005572 (4)ref|XP_006347620.1|113PREDICTED: HVA22-like protein e-like isoform X1 [Solanum tuberosum]
JMSF003J09Sequence227005611 (2)777005572 (4)ref|XP_006347620.1|108PREDICTED: HVA22-like protein e-like isoform X1 [Solanum tuberosum]
JMSF008I03Sequence261005572 (4)ref|XP_009613070.1|1e-05PREDICTED: HVA22-like protein e [Nicotiana tomentosiformis]790005611 (2)ref|XP_006347620.1|164PREDICTED: HVA22-like protein e-like isoform X1 [Solanum tuberosum]

Alignment

This contig is upended


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JMSF008I03-                                             GGGCTCATAACTTTGTCTTCACTCTT
JMFF051D22-                                                CTCATAACTTTGTCTTCACTCTT
                      ____________________________________________________________
consensus                                               GGGCTCATAACTTTGTCTTCACTCTT
 
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JMSF008I03-           CTCACTCTCAACCGCTGCTTCTCTCTACGAAAAATAGCTCTCTCCTCTCTCTACACAGTT
JMFF051D22-           CTCACTCTCAACCGCTGCTTCTCTCTACGAAAAATAGCTCTCTCCTCTCTCTACACAGTT
                      ____________________________________________________________
consensus             CTCACTCTCAACCGCTGCTTCTCTCTACGAAAAATAGCTCTCTCCTCTCTCTACACAGTT
 
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JMSF008I03-           TCAATCGGAAGTTGATTCGTCATGAGTCGTTTTTGGACTTTGATCACTCACCTTCATACT
JMFF051D22-           TCAATCGGAAGTTGATTCGTCATGAGTCGTTTTTGCACTTTGATCACTCACCTTCATACT
                      ____________________________________________________________
consensus             TCAATCGGAAGTTGATTCGTCATGAGTCGTTTTTGGACTTTGATCACTCACCTTCATACT
 
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JMSF008I03-           CTCGCCGGGCCAGTGATGATGTTGCTCTATCCTCTG                        
JMFF051D22-           CTCGCCGGGCCAGTGATGATGTTGCTCTATCCTCTGCTTCTAAGCAAAATAGTCCTCCCA
                      ____________________________________________________________
consensus             CTCGCCGGGCCAGTGATGATGTTGCTCTATCCTCTGCTTCTAAGCAAAATAGTCCTCCCA
 
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JMFF051D22-           CGGCTCCCGAGTTCAGGACACGCACCATCACGTATTCGCGAGAGAAGTGGTAGACAAAAC
                      ____________________________________________________________
consensus             CGGCTCCCGAGTTCAGGACACGCACCATCACGTATTCGCGAGAGAAGTGGTAGACAAAAC
 
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JMFF051D22-           ACTTCCTATAGGTTTACCATTCCAGAGGCAATTTCCACAACCATGGCTGGAGATATTCGG
                      ____________________________________________________________
consensus             ACTTCCTATAGGTTTACCATTCCAGAGGCAATTTCCACAACCATGGCTGGAGATATTCGG
 
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JMFF051D22-           GCGATCCTAAAGCTTCCGCTATACGAGGACAGGTATGCGTCTGTTGTAGCGATAGAAACA
rJMSF003J09+                                        AGGTATGCGTCTGTTGTAGCGATAGAAACA
                      ____________________________________________________________
consensus             GCGATCCTAAAGCTTCCGCTATACGAGGACAGGTATGCGTCTGTTGTAGCGATAGAAACA
 
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JMFF051D22-           ACTTCAAAATTGGATGATGAGCAGTGGCTAGCATATTGGATACTGTATTCTTTCCTCACG
rJMSF003J09+          ACTTCAAAATTGGATGATGAGCAGTGGCTAGCATATTGGATACTGTATTCTTTCCTCACG
                      ____________________________________________________________
consensus             ACTTCAAAATTGGATGATGAGCAGTGGCTAGCATATTGGATACTGTATTCTTTCCTCACG
 
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JMFF051D22-           CTCATGGAAATGCTACTGGAACCTATGCTTCAGTGG                        
rJMSF003J09+          CTCATGGAAATGCTACTGGAACCTATGCTTCAGTGGTATATATGTTTTAATTTTTTCCCC
                      ____________________________________________________________
consensus             CTCATGGAAATGCTACTGGAACCTATGCTTCAGTGGTATATATGTTTTAATTTTTTCCCC
 
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rJMSF003J09+          CTGCTGCTAATTCTTTTTTCTTTTCTGGAAGTTATTCAATTTGTTTATACTGGAGCTTTG
                      ____________________________________________________________
consensus             CTGCTGCTAATTCTTTTTTCTTTTCTGGAAGTTATTCAATTTGTTTATACTGGAGCTTTG
 
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rJMSF003J09+          TACTTTATACCTTTCGTGTGTTACAAGTTCAAACTCAGATTATAAAAGGTTTGGAGTTTT
                      ____________________________________________________________
consensus             TACTTTATACCTTTCGTGTGTTACAAGTTCAAACTCAGATTATAAAAGGTTTGGAGTTTT
 
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rJMSF003J09+          GTGTGATGTGTGATATATGTGTGATGGTGATAGGATACCAATATGGTATGATGTGAAATT
rJMFF051D22+                                    TTCAGTGGATACCAATATGGTATGATGTGAAATT
                      ____________________________________________________________
consensus             GTGTGATGTGTGATATATGTGTGATGTTGATTGGATACCAATATGGTATGATGTGAAATT
 
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rJMSF003J09+          GTTATTTGTGGCGTGGCTGGTTCTGCCTCAGTTCAGAGGGGCTGCCTTCATATATAACAA
rJMFF051D22+          GTTATTTGTGGCGTGGCTGGTTCTGCCTCAGTTCAGAGGGGCTGCCTTCATATATAACAA
                      ____________________________________________________________
consensus             GTTATTTGTGGCGTGGCTGGTTCTGCCTCAGTTCAGAGGGGCTGCCTTCATATATAACAA
 
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rJMSF003J09+          ACTGGTTAGGGAAAAGCTTATCAAGAAATATGGAGCAAGATTCTTACCACAACAACAAAA
rJMFF051D22+          ACTGGTTAGGGAAAAGCTTATCAAGAAATATGGAGCAAGATTCTTACCACAACAACAAAA
                      ____________________________________________________________
consensus             ACTGGTTAGGGAAAAGCTTATCAAGAAATATGGAGCAAGATTCTTACCACAACAACAAAA
 
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rJMSF003J09+          TTCCCCAAATGGCAAGGCCAAAACCAAAACTAAATTTGTGGACTTCATTTCCCCTAAGAA
rJMFF051D22+          TTCCCCAAATGGCAAGGCCAAAACCAAAACTAAATTTGTGGACTTCATTTCCCCTAAGAA
                      ____________________________________________________________
consensus             TTCCCCAAATGGCAAGGCCAAAACCAAAACTAAATTTGTGGACTTCATTTCCCCTAAGAA
 
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rJMSF003J09+          GGGTGATCATGAAGTTTCCTAAAAGAAGAAGAGATGGACCGTGGACACACCTTGATATCT
rJMFF051D22+          GGGTGATCATGAAGTTTCCTAAAAGAAGAAGAGATGGACCGTGGACACACCTTGATATCT
                      ____________________________________________________________
consensus             GGGTGATCATGAAGTTTCCTAAAAGAAGAAGAGATGGACCGTGGACACACCTTGATATCT
 
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rJMSF003J09+          TACAAGCTCCCTTCTTGTCTGAATTCTTCTTTTTACCTTTCTTGATTTAATTTGTTGACC
rJMFF051D22+          TACAAGCTCCCTTCTTGTCTGAATTCTTCTTTTTACCTTTCTTGATTTAATTTGTTGACC
                      ____________________________________________________________
consensus             TACAAGCTCCCTTCTTGTCTGAATTCTTCTTTTTACCTTTCTTGATTTAATTTGTTGACC
 
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rJMSF003J09+          AGTAAAGATATGTACATCGTATGATCTTTGACATGTTCACATGAAATATCACTTTTTGGT
rJMFF051D22+          AGTAAAGATATGTACATCGTATGATCTTTGACATGTTCACATGAAATATCACTTTTTGGT
                      ____________________________________________________________
consensus             AGTAAAGATATGTACATCGTATGATCTTTGACATGTTCACATGAAATATCACTTTTTGGT
 
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rJMSF003J09+          GTTTGTAATGTAAAAAATTGTGTCCAAAATGTTGTTAATTGAGATTTACTAATGAATG  
rJMFF051D22+          GTTTGTAATGTAAAAAATTGTGTCCAAAATGTTGTTAATTGAGATTTACTAATGAATGTA
                      ____________________________________________________________
consensus             GTTTGTAATGTAAAAAATTGTGTCCAAAATGTTGTTAATTGAGATTTACTAATGAATGTA
 
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rJMFF051D22+          TGTTTGAGGATTGTGTATTGTACACAATCAAAGGTAAAAAAAAAAAAAAAAACTCTCCAG
                      ____________________________________________________________
consensus             TGTTTGAGGATTGTGTATTGTACACAATCAAAGGTAAAAAAAAAAAAAAAAACTCTCCAG