| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF050N24 | Sequence | 606 | 007090 (6) | ref|XP_009628077.1| | 1e-72 | PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic [Nicotiana tome | 627 | 005569 (3) | ref|XP_009630574.1| | 6e-16 | PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic-like [Nicotiana |
| JMSF007I14 | Sequence | 476 | 007090 (6) | ref|XP_009760237.1| | 8e-42 | PREDICTED: nematode resistance protein-like HSPRO2 [Nicotiana sylvestris] | 745 | 005569 (3) | ref|XP_009630574.1| | 2e-75 | PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic-like [Nicotiana |
| JMSF009P24 | Sequence | 303 | 007090 (6) | 721 | 005569 (3) | ref|XP_009630574.1| | 6e-69 | PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic-like [Nicotiana | |||
This contig is upended
. : . : . : . : . : . :
rJMSF007I14+ C
____________________________________________________________
consensus C
. : . : . : . : . : . :
rJMSF009P24+ AAGCACAACAGACGTCGTATGTACAACCACAGCAGAA
rJMSF007I14+ GACTATAAAGTGCTCCTGAATCCAAGCACAACAGACGTCGTATGTACAACCACAGCAGAA
____________________________________________________________
consensus GACTATAAAGTGCTCCTGAATCCAAGCACAACAGACGTCGTATGTACAACCACAGCAGAA
. : . : . : . : . : . :
rJMSF009P24+ GCATTAGCGATGGGCAAAATCGTAGTATGTGCCAATCATCCCTCGAACGAATTCTTTATG
rJMSF007I14+ GCATTAGCGATGGGCAAAATCGTAGTATGTGCCAATCATCCCTCGAACGAATTCTTTATG
____________________________________________________________
consensus GCATTAGCGATGGGCAAAATCGTAGTATGTGCCAATCATCCCTCGAACGAATTCTTTATG
. : . : . : . : . : . :
rJMSF009P24+ CAGTTCCCAAACTGCCGCACATACGATGATGGCAACGGTTTTGTTAAAGCTACCCGGGAG
rJMSF007I14+ CAGTTCCCAAACTGCCGCACATACGATGATGGCAACGGTTTTGTTAAAGCTACCCGGGAG
____________________________________________________________
consensus CAGTTCCCAAACTGCCGCACATACGATGATGGCAACGGTTTTGTTAAAGCTACCCGGGAG
. : . : . : . : . : . :
rJMSF009P24+ GCACTGTCCGAGCAACCTGCTCCCCTGAGCGATGAGCAAAGGCACGAGCTTTCGTGGGAG
rJMSF007I14+ GCACTGTCCGAGCAACCTGCTCCCCTGAGCGATGAGCAAAGGCACGAGCTTTCGTGGGAG
rJMFF050N24+ ATGAGCAAAGGCACGAGCTTTCGTGGGAG
____________________________________________________________
consensus GCACTGTCCGAGCAACCTGCTCCCCTGAGCGATGAGCAAAGGCACGAGCTTTCGTGGGAG
. : . : . : . : . : . :
rJMSF009P24+ GCAGCAACCGAGAGGTTTTTGAAAGCAGCCGAGCTGGAGAACATTCCAAAGCGGAAACTG
rJMSF007I14+ GCAGCAACCGAGAGGTTTTTGAAAGCAGCCGAGCTGGAGAACATTCCAAAGCGGAAACTG
rJMFF050N24+ GCAGCAACCGAGAGG-TTTTGAAAGCAGCCGAGCTGGAGAACATTCCAAAGCGGAAACTG
____________________________________________________________
consensus GCAGCAACCGAGAGGTTTTTGAAAGCAGCCGAGCTGGAGAACATTCCAAAGCGGAAACTG
. : . : . : . : . : . :
rJMSF009P24+ TCAATGAAGAAGAGCTCAAAGCCTACTCTCTCCACATCCATTAGCCTAAAAGACATTAAT
rJMSF007I14+ TCAATGAAGAAGAGCTCAAAGCCTACTCTCTCCACATCCATTAGCCTAAAAGACATTAAT
rJMFF050N24+ TCAATGAAGAAGAGCTCAAAGCCTACTCTCTCCACATCCATTAGCCTAAAAGACATTAAT
____________________________________________________________
consensus TCAATGAAGAAGAGCTCAAAGCCTACTCTCTCCACATCCATTAGCCTAAAAGACATTAAT
. : . : . : . : . : . :
rJMSF009P24+ CTTGAAGATGCATCTGCATTCATACACAATGTGGGAACTGGGTTTCTGAATTCGCCACCA
rJMSF007I14+ CTTGAAGATGCATCTGCATTCATACACAATGTGGGAACTGGGTTTCTGAATTCGCCACCA
rJMFF050N24+ CTTGAAGATGCATCTGCATTCATACACAATGTGGGAACTGGGTTTCTGAATTCGCCACCA
____________________________________________________________
consensus CTTGAAGATGCATCTGCATTCATACACAATGTGGGAACTGGGTTTCTGAATTCGCCACCA
. : . : . : . : . : . :
rJMSF009P24+ AACGAAGAGCAATGTAAAGAGCTCGGCCTCGCTTTACCTTCCAAGAAAAAGGGATCTTCT
rJMSF007I14+ AACGAAGAGCAATGTAAAGAGCTCGGCCTCGCTTTACCTTCCAAGAAAAAGGGATCTTCT
rJMFF050N24+ AACGAAGAGCAATGTAAAGAGCTCGGCCTCGCTTTACCTTCCAAGAAAAAGGGATCTTCT
____________________________________________________________
consensus AACGAAGAGCAATGTAAAGAGCTCGGCCTCGCTTTACCTTCCAAGAAAAAGGGATCTTCT
. : . : . : . : . : . :
rJMSF009P24+ TCTAGTAAACGGATATGAGAATCATGGTCAAGTCACACTAACACAATCTTCAAATGAATT
rJMSF007I14+ TCTAGTAAACGGATATGAGAATCATGGTCAAGTCACACTAACACAATCTTCAAATGAATT
rJMFF050N24+ TCTAGTAAACGGATATGAGAATCATGGTCAAGTCACACTAACACAATCTTCAAATGAATT
____________________________________________________________
consensus TCTAGTAAACGGATATGAGAATCATGGTCAAGTCACACTAACACAATCTTCAAATGAATT
. : . : . : . : . : . :
rJMSF009P24+ GGACCTAACGTCAAGGCGGGGAGGGGGCATGCAGTGTTAATGTTTATTGCCATCTTTTCA
rJMSF007I14+ GGACCTAACGTCAAGGCGGGGAGGGGGCATGCAGTGTTAATGTTTATTGCCATCTTTTCA
rJMFF050N24+ GGACCTAACGTCAAGGCGGGGAGGGGGCATGCAGTGTTAATGTTTATTGCCATCTTTTCA
____________________________________________________________
consensus GGACCTAACGTCAAGGCGGGGAGGGGGCATGCAGTGTTAATGTTTATTGCCATCTTTTCA
. : . : . : . : . : . :
rJMSF009P24+ TTTCTATGGTAACTGATAACCAGGGATTACTTTTGTTGTTCATCTCATGAATAAATCTCA
rJMSF007I14+ TTTCTATGGTAACTGATAACCAGGGATTACTTTTGTTGTTCATCTCATGAATAAATCTCA
rJMFF050N24+ TTTCTATGGTAACTGATAACCAGGGATTACTTTTGTTGTTCATCTCATGAATAAATCTCA
____________________________________________________________
consensus TTTCTATGGTAACTGATAACCAGGGATTACTTTTGTTGTTCATCTCATGAATAAATCTCA
. : . : . : . : . : . :
rJMSF009P24+ AATTGGGGGGACCAGGCAAGAATGGTGAAGTGTTAATGTTGTGCAGTCAATGTTACATAC
rJMSF007I14+ AATTGGGGGGACCAGGCAAGAATGGTGAAGTGTTAATGTTGTGCAGTCAATGTTACATAC
rJMFF050N24+ AATTGGGGGGACCAGGCAAGAATGGTGAAGTGTTAATGTTGTGCAGTCAATGTTACATA-
____________________________________________________________
consensus AATTGGGGGGACCAGGCAAGAATGGTGAAGTGTTAATGTTGTGCAGTCAATGTTACATAC
. : . : . : . : . : . :
rJMSF009P24+ CATGTATTGTATATTATGCGATTT
rJMSF007I14+ CATGTATTGTATATTATGCGATTT
rJMFF050N24+ CATGTATTGTATATTATGCGATTTTCGCGTGTGTATACAGTATATATATATACACACTAT
____________________________________________________________
consensus CATGTATTGTATATTATGCGATTTTCGCGTGTGTATACAGTATATATATATACACACTAT
. : . : . : . : . : . :
rJMFF050N24+ TAAGGCTATTTTTCTATGTGTGTTTATAAAACCAAAAGAAAAAAAAAAACTCTCCAGGGT
____________________________________________________________
consensus TAAGGCTATTTTTCTATGTGTGTTTATAAAACCAAAAGAAAAAAAAAAACTCTCCAGGGT