Contig 005568:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF020F24Sequence229011812 (4)299005568 (3)ref|XP_009766354.1|7e-11PREDICTED: target of Myb protein 1-like [Nicotiana sylvestris]
JMFF033M17Sequence229011812 (4)298005568 (3)ref|XP_009766354.1|6e-10PREDICTED: target of Myb protein 1-like [Nicotiana sylvestris]
JMFF050N14Sequence625011812 (4)ref|XP_006366880.1|1e-43PREDICTED: TOM1-like protein 2-like [Solanum tuberosum]602005568 (3)ref|XP_010256972.1|2e-07PREDICTED: target of Myb protein 1-like isoform X1 [Nelumbo nucifera]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033M17+                                                               TATACAC
rJMFF020F24+                                                           TGGCTATACAC
                      ____________________________________________________________
consensus                                                              TGGCTATACAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033M17+          CACCCTGGGCTCCAACTCCAGGCTATTTCAGCCAATCAAACCAATCATTCCCCCCACTTT
rJMFF020F24+          CACCCTGGGCTCCAACTCCAGGCTATTTCAGCCAATCAAACCAATCATTCCCCCCACTTT
rJMFF050N14+                                                                   TTT
                      ____________________________________________________________
consensus             CACCCTGGGCTCCAACTCCAGGCTATTTCAGCCAATCAAACCAATCATTCCCCCCACTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033M17+          ACATGTACTCATCAACCCCACAAACCACCCGCCACGAGCTCATCTTCTCCTCACCTCCCG
rJMFF020F24+          ACATGTACTCATCAACCCCAC-AACCACCCGCCACGAGCTCATCTTCTCCTCACCTCCCG
rJMFF050N14+          ACATGTACTCATCAACCCCAC-AACCACCCGCCACGAGCTCATTTTCTCCTCACCTCCCG
                      ____________________________________________________________
consensus             ACATGTACTCATCAACCCCAC-AACCACCCGCCACGAGCTCATCTTCTCCTCACCTCCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033M17+          GCCAACTCGTTCCCAGCTATGGGAAACAATGGGAATGCACAAGTCAGCGCCACAACGGGT
rJMFF020F24+          GCCAACTCGTTCCCAGCTATGGGAAACAATGGGAATGCACAAGTCAGCGCCACAACGGGT
rJMFF050N14+          GCCAACTCGTTCCCAGCTATGGGAAACAATGGGAATGCACAAGTCAGCGCCACAACGGGT
                      ____________________________________________________________
consensus             GCCAACTCGTTCCCAGCTATGGGAAACAATGGGAATGCACAAGTCAGCGCCACAACGGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033M17+          CTCTCCTCTCCTGAACAGAAGTCTTTCATCCCACCATACAGGCTGTTTGAAGATCTTAAT
rJMFF020F24+          CTCTCCTCTCCTGAACAGAAGTCTTTCATCCCACCATACAGGCTGTTTGAAGATCTTAAT
rJMFF050N14+          CTCTCCTCTCCTGAACAGAAGTCTTTCATCCCACCATACAGGCTGTTTGAAGATCTTAAT
                      ____________________________________________________________
consensus             CTCTCCTCTCCTGAACAGAAGTCTTTCATCCCACCATACAGGCTGTTTGAAGATCTTAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF033M17+          GTTTTGGTTAAGGGAGATCATCAGTATCCTAAGGCAACAGGCAACCCA            
rJMFF020F24+          GTTTTGGTTAAGGGAGATCATCAGTATCCTAAGGCAACAGGCAACCCA            
rJMFF050N14+          GTTTTGGTTAAGGGAGATCATCAGTATCCTAAGACAACAGGCAACCCAGCATACAATTTG
                      ____________________________________________________________
consensus             GTTTTGGTTAAGGGAGATCATCAGTATCCTAAGGCAACAGGCAACCCAGCATACAATTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF050N14+          TTTGGAGCAAACAGTCATAATATCATTGATTTGCGCAAATGAGATGATTGATAGGGAATA
                      ____________________________________________________________
consensus             TTTGGAGCAAACAGTCATAATATCATTGATTTGCGCAAATGAGATGATTGATAGGGAATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF050N14+          TACAACAACATATTACAAGCTTTACATGATCTGCTGGCTGGCCTTTTTCAAGTTTATTTT
                      ____________________________________________________________
consensus             TACAACAACATATTACAAGCTTTACATGATCTGCTGGCTGGCCTTTTTCAAGTTTATTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF050N14+          GTAGGTGGAATTTTGGAATAACTATGATTTAGTTGTTATTGTAGCCATGCAATTACTTTG
                      ____________________________________________________________
consensus             GTAGGTGGAATTTTGGAATAACTATGATTTAGTTGTTATTGTAGCCATGCAATTACTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF050N14+          TGTGCAGGCAGCAAGCTAATAGAGATATTTTATGCTTTTTAGGTTTTACTATTCATCAGC
                      ____________________________________________________________
consensus             TGTGCAGGCAGCAAGCTAATAGAGATATTTTATGCTTTTTAGGTTTTACTATTCATCAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF050N14+          TATATATTGTACTTTCATTTATTTCTTTTTAAATAATATCATTAACTTAAGTCTTTAGAG
                      ____________________________________________________________
consensus             TATATATTGTACTTTCATTTATTTCTTTTTAAATAATATCATTAACTTAAGTCTTTAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF050N14+          TATAAGGTCTTCACTTGGAAGATACATGCTTATCACTAATAATAAATGGTTCAATTTTGG
                      ____________________________________________________________
consensus             TATAAGGTCTTCACTTGGAAGATACATGCTTATCACTAATAATAAATGGTTCAATTTTGG