Contig 005559:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFF050C05-                                             AATTATATGTTTTTTTTTTTTTTTCA
                      ____________________________________________________________
consensus                                               AATTATATGTTTTTTTTTTTTTTTCA
 
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rJMSF001E24-                                               TATTGAGANAGTCATGCACCACT
JMFF050C05-           TTTTTTGGTGAATATATTAGACGGAGCACTGATGAAATATTGAGAAAGTCATGCACCACT
                      ____________________________________________________________
consensus             TTTTTTGGTGAATATATTAGACGGAGCACTGATGAAATATTGAGAAAGTCATGCACCACT
 
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rJMSF001E24-          CTGACTTCTTTGAGAGTGATGATAATTTCTCCTACCCATATTATTTTCTGAGCTCCGTTT
JMFF050C05-           CTGACTTCTTTGAGAGTGATGATAATTTCTCCTACCCATATTATTTTCTGAGCTCCGTTT
                      ____________________________________________________________
consensus             CTGACTTCTTTGAGAGTGATGATAATTTCTCCTACCCATATTATTTTCTGAGCTCCGTTT
 
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rJMSF001E24-          TCCTTTTTATTTTTTTTTATTTTTTTTTTTAATTTTNGGATTTTGCAAAAGTATAATTTT
JMFF050C05-           TCCTTTTTA-TTTTTTTTATTTTTTTTTTTAATTTTTGGATTTTGCAAAAGTATAATTTT
                      ____________________________________________________________
consensus             TCCTTTTTATTTTTTTTTATTTTTTTTTTTAATTTTTGGATTTTGCAAAAGTATAATTTT
 
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rJMSF001E24-          TATGNGCCNAANGATGNGANCTTTCAAANCANCCANGANGCGGACCGTNCAATTANCNCA
JMFF050C05-           TATGTGCCGAATGATGTGATCTTTCAGATCAACCATGATGCGGACCGTACAATTAGCTCA
                      ____________________________________________________________
consensus             TATGTGCCGAATGATGTGATCTTTCAGATCAACCATGATGCGGACCGTACAATTAGCTCA
 
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rJMSF001E24-          AANCTNGGGGGGAAAACCTTTGGTTACNGAGGGCNCAANATTTGCTTATTTANATNATTT
JMFF050C05-           AAGCTTGTGTGGAAAACCTTTGGTTACTGATGGCTCAATATTTGCTTATTTATATTATTT
rJMSF033N03+                               GGTTACNGATGGCTCNATATTTGCTNATTNATATTATTC
                      ____________________________________________________________
consensus             AAGCTTGTGTGGAAAACCTTTGGTTACTGATGGCTCAATATTTGCTTATTTATATTATTT
 
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rJMSF001E24-          GTAGTTTNCNANANAGGAAAATTGGGTTGGAGGATTGGGCGGAAGGTTGANCTTACTTTG
JMFF050C05-           GTAGTTTTCGAGAGAGGAAGATTGGGTTGGAGGATTGGGCGGAAGGTTGATCTTAGTTTG
rJMSF033N03+          GTAGTTTTCGAGAGAGGAAGATTGGGTTGGAGGATTGGGCGGAAGGTTGATCTTAGTTTG
                      ____________________________________________________________
consensus             GTAGTTTTCGAGAGAGGAAGATTGGGTTGGAGGATTGGGCGGAAGGTTGATCTTAGTTTG
 
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rJMSF001E24-          GATGAAATTTGGGAAGNGGAAAGANAGTAAAGGGAAAGGGTTTTGGAGNGGGNGGATATG
JMFF050C05-           GATGAAATTTGGGAAGTGGAAAGAGAGTAAAGGGAAAGGGTTTTGGAGTGGGTGGATATG
rJMSF033N03+          GATGAAATTTGGGAAGTGGAAAGAGAGTAAAGGGAAAGGGTTTTGGAGTGGGTGGATATG
                      ____________________________________________________________
consensus             GATGAAATTTGGGAAGTGGAAAGAGAGTAAAGGGAAAGGGTTTTGGAGTGGGTGGATATG
 
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rJMSF001E24-          AAANATTTGAACTTCT                                            
JMFF050C05-           AAAGATTTGAAATTCTTAAAATGAATGCTCTAGTCTTTCCTATTCCTCCCATTCCAATCT
rJMSF033N03+          AAAGATTTGAAATTCTTAAAATGAATGCTCTAGTCTTTCCTATTCCTCCCATTCCAATCT
                      ____________________________________________________________
consensus             AAAGATTTGAAATTCTTAAAATGAATGCTCTAGTCTTTCCTATTCCTCCCATTCCAATCT
 
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JMFF050C05-           TTTCCCATTAGAACTCCCTTTCCCACTCTTCCTTTCTGCAATGTTTTGGTTTGTCAATTG
rJMSF033N03+          TTTCCCATTAGAACTCCCTTTCCCACTCTTCCTTTCTGCAATGTTNTGGTTTGTCAATNG
rJMFF050C05+                                               GCAATGTTTTGGTTTGTCAATTG
                      ____________________________________________________________
consensus             TTTCCCATTAGAACTCCCTTTCCCACTCTTCCTTTCTGCAATGTTTTGGTTTGTCAATTG
 
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JMFF050C05-           TCATTGAGTAATTTATGCTACTGGGTATATATTTGAAAAACATGCGATTATG        
rJMSF033N03+          TCATTGAGTAATTTATGCTACTGGGTATATATNTGAAAAACATGCGATTATGNNATNGTT
rJMFF050C05+          TCATTGAGTAATTTATGCTACTGGGTATATATTTGAAAAACATGCGATTATGTTATTGTT
                      ____________________________________________________________
consensus             TCATTGAGTAATTTATGCTACTGGGTATATATTTGAAAAACATGCGATTATGTTATTGTT
 
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rJMSF033N03+          TNGGTTAACTGCTNTGTTATTTAGCATTAANTGTTTCCTAGGCTNTAGNTTATGGAATTC
rJMFF050C05+          TTGGTTAACTGCTTTGTTATTTAGCATTAATTGTTTCCTTGGCTTTAGTTTATGGAATTC
                      ____________________________________________________________
consensus             TTGGTTAACTGCTTTGTTATTTAGCATTAATTGTTTCCTTGGCTTTAGTTTATGGAATTC
 
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rJMSF033N03+          ACCGCAGCTGCACCAAGGAAGAGTA                                   
rJMFF050C05+          ACTGCAGCTGCACCAAGGAAGAGTATCGGCGCTGCCATTGTTTGATTTGTTTCTCTTTCT
                      ____________________________________________________________
consensus             ACTGCAGCTGCACCAAGGAAGAGTATCGGCGCTGCCATTGTTTGATTTGTTTCTCTTTCT
 
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rJMFF050C05+          ATTGTGTATAAAATGGTAACTCAGCACTCCTCTAGCCGCTGTCACTGCACCTGCCCCAAG
                      ____________________________________________________________
consensus             ATTGTGTATAAAATGGTAACTCAGCACTCCTCTAGCCGCTGTCACTGCACCTGCCCCAAG
 
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rJMFF050C05+          ATGCAATACCATTATGCTATTGGATTCTCTATGCTTTTTCTGCTATTGAGGAGGGATTTG
                      ____________________________________________________________
consensus             ATGCAATACCATTATGCTATTGGATTCTCTATGCTTTTTCTGCTATTGAGGAGGGATTTG
 
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rJMFF050C05+          ATCAGTGTGAAATGTTCAAGTGGTTATGTTTTTCAGTAATTTTAATGTATTCTTAGATTT
                      ____________________________________________________________
consensus             ATCAGTGTGAAATGTTCAAGTGGTTATGTTTTTCAGTAATTTTAATGTATTCTTAGATTT
 
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rJMFF050C05+          ACTGCTGTATTCAGATTCAAAAGCAAGAATGTTATTGTATTTAGCATAGACACGAGTTTT
                      ____________________________________________________________
consensus             ACTGCTGTATTCAGATTCAAAAGCAAGAATGTTATTGTATTTAGCATAGACACGAGTTTT
 
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rJMFF050C05+          TCTGCTCGTTACAGTTGCCTTAATGTTTGAATGGAAAACCTCCTTTCTGTTGCAATGAAG
                      ____________________________________________________________
consensus             TCTGCTCGTTACAGTTGCCTTAATGTTTGAATGGAAAACCTCCTTTCTGTTGCAATGAAG
 
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rJMFF050C05+          TTTTGTGGTTTAGTTGATCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             TTTTGTGGTTTAGTTGATCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG