Contig 005558:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF048H19Sequence390004663 (3)ref|XP_011095003.1|1e-08PREDICTED: LOW QUALITY PROTEIN: ATP-dependent Clp protease ATP-binding subunit 326005558 (2)
JMFF050A18Sequence595004663 (3)ref|XP_009781367.1|3e-33PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondr646005558 (2)gb|AFK34447.1|2e-27unknown [Medicago truncatula]

Alignment

This contig is upended


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rJMFF050A18+                        ATTGCAAAGAAAGCAATGGTAAAAACACTGGTGCCAGAGGGCTAAG
                      ____________________________________________________________
consensus                           ATTGCAAAGAAAGCAATGGTAAAAACACTGGTGCCAGAGGGCTAAG
 
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rJMFF050A18+          AGCCTTACTTGAAACTATATTGACTGACGCTATGTATGAGATTCCCGACGTCAAGACAGG
                      ____________________________________________________________
consensus             AGCCTTACTTGAAACTATATTGACTGACGCTATGTATGAGATTCCCGACGTCAAGACAGG
 
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rJMFF050A18+          AGACGAGAGAGTAGATGCTGTTGTGGTAGATGAAGAGTCGGTAGGTTCTACAAGTGGCCC
                      ____________________________________________________________
consensus             AGACGAGAGAGTAGATGCTGTTGTGGTAGATGAAGAGTCGGTAGGTTCTACAAGTGGCCC
 
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rJMFF050A18+          TGGATGCGGTGGTATAGTGCTTCGGGGAAATGGTGCTTTGGAGACCTACCTCGCTAAGCC
                      ____________________________________________________________
consensus             TGGATGCGGTGGTATAGTGCTTCGGGGAAATGGTGCTTTGGAGACCTACCTCGCTAAGCC
 
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rJMFF050A18+          GCGGTTCAAAGATCAAAGGGAAATGGTGGAAGTGGAAATGCAGGACAGTGAAGCAGAAGT
                      ____________________________________________________________
consensus             GCGGTTCAAAGATCAAAGGGAAATGGTGGAAGTGGAAATGCAGGACAGTGAAGCAGAAGT
 
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rJMFF048H19+                 ACAGCAATGAGCATGTAAGATTAGTGGGGATCACATTGTATAAGCTTAGTCCC
rJMFF050A18+          ATCCTCTACAGCAATGAGCATGTAAGATTAGTGGGGATCACATTGTATAAGCTTAGTCCC
                      ____________________________________________________________
consensus             ATCCTCTACAGCAATGAGCATGTAAGATTAGTGGGGATCACATTGTATAAGCTTAGTCCC
 
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rJMFF048H19+          TTAGTTGTAAATTTTTATTTTATTTTCCATTCATGGTACTGTATTGGTCCCCTTGTAACA
rJMFF050A18+          TTAGTTGTAAATTTTTATTTTATTTTCCATTCATGGTACTGTATTGGTCCCCTTGTAACA
                      ____________________________________________________________
consensus             TTAGTTGTAAATTTTTATTTTATTTTCCATTCATGGTACTGTATTGGTCCCCTTGTAACA
 
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rJMFF048H19+          CGAATATAGATTATAGTTAGTATTTGGCCCGTACGGGCTTAGCTCATTGGTTCAGTAGGC
rJMFF050A18+          CGAATATAGATTATAGTTAGTATTTGGCCCGTACGGGCTTAGCTCATTGGTTCAGTAGGC
                      ____________________________________________________________
consensus             CGAATATAGATTATAGTTAGTATTTGGCCCGTACGGGCTTAGCTCATTGGTTCAGTAGGC
 
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rJMFF048H19+          AATATTTGGGAGAAGAATAGATTATAGTCACAGAAGATACAATGATAGGACCAGGGTGA-
rJMFF050A18+          AATATTTGGGAGAAGAATAGATTATAGTCACAGAAGATACAATGATAGGACCAGGGTGAG
                      ____________________________________________________________
consensus             AATATTTGGGAGAAGAATAGATTATAGTCACAGAAGATACAATGATAGGACCAGGGTGAG
 
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rJMFF048H19+          GATGATAATGTAACTATGTAAACCTTCTAATTTTATTCTAAAGATGTAAAGATTTTTTTG
rJMFF050A18+          GAGGATAATGTAACTATGTAAACCTTCTAATTTTATTCTAAAGATGTAAAGATTTTTTTG
                      ____________________________________________________________
consensus             GATGATAATGTAACTATGTAAACCTTCTAATTTTATTCTAAAGATGTAAAGATTTTTTTG
 
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rJMFF048H19+          TCAATAAGAGGAAGGGGGATTGTATGATGAGTC                           
rJMFF050A18+          TCAATAAGAGGAAGGGGGATTGTATGATGAGTCAAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus             TCAATAAGAGGAAGGGGGATTGTATGATGAGTCAAAAAAAAAAAAAAAACTCTCCAGGGT