| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009D21 | Sequence | 487 | 003092 (6) | emb|CDP18583.1| | 2e-48 | unnamed protein product [Coffea canephora] | 617 | 005556 (8) | ref|XP_009597827.1| | 5e-77 | PREDICTED: chaperonin 60 subunit beta 2, chloroplastic [Nicotiana tomentosiform |
| JMFF048L08 | Sequence | 463 | 003092 (6) | emb|CDP18583.1| | 2e-44 | unnamed protein product [Coffea canephora] | 294 | 005556 (8) | |||
| JMFF049M05 | Sequence | 475 | 003092 (6) | emb|CDP18583.1| | 5e-45 | unnamed protein product [Coffea canephora] | 401 | 005556 (8) | dbj|BAH20275.1| | 3e-24 | AT1G55490 [Arabidopsis thaliana] |
| JMFS027D12 | Sequence | 601 | 005556 (8) | emb|CDP18583.1| | 4e-123 | unnamed protein product [Coffea canephora] | |||||
| JMFS110G04 | Sequence | 627 | 005556 (8) | ref|XP_009597827.1| | 9e-79 | PREDICTED: chaperonin 60 subunit beta 2, chloroplastic [Nicotiana tomentosiform | |||||
| JMSF002I10 | Sequence | 273 | 023097 | gb|EMS48176.1| | 2e-04 | Glutamyl-tRNA synthetase, chloroplastic/mitochondrial [Triticum urartu] | 727 | 005556 (8) | ref|XP_011089709.1| | 2e-83 | PREDICTED: ruBisCO large subunit-binding protein subunit beta, chloroplastic [S |
| JMSF022E04 | Sequence | 664 | 003092 (6) | emb|CDP18583.1| | 2e-99 | unnamed protein product [Coffea canephora] | 774 | 005556 (8) | ref|XP_009597827.1| | 2e-114 | PREDICTED: chaperonin 60 subunit beta 2, chloroplastic [Nicotiana tomentosiform |
| JMSF051A10 | Sequence | 675 | 003092 (6) | emb|CDP18583.1| | 3e-102 | unnamed protein product [Coffea canephora] | 729 | 005556 (8) | ref|XP_009597827.1| | 9e-102 | PREDICTED: chaperonin 60 subunit beta 2, chloroplastic [Nicotiana tomentosiform |
This contig is upended
. : . : . : . : . : . :
JMFS027D12- GAAGACCAC
____________________________________________________________
consensus GAAGACCAC
. : . : . : . : . : . :
JMFS027D12- AAAAGCTTTAGTGTCTGAGCTGAAAAACATGTCAAAAGAGGTGGAAGACAGTGAACTAGC
____________________________________________________________
consensus AAAAGCTTTAGTGTCTGAGCTGAAAAACATGTCAAAAGAGGTGGAAGACAGTGAACTAGC
. : . : . : . : . : . :
JMFS027D12- AGATGTGGCTGCAGTGAGTGCTGGGAACAACTATGAAGTGGGAAATATGATTGCTGAAGC
____________________________________________________________
consensus AGATGTGGCTGCAGTGAGTGCTGGGAACAACTATGAAGTGGGAAATATGATTGCTGAAGC
. : . : . : . : . : . :
JMFS027D12- CATGAGCAAAGTTGGTAGGAAGGGAGTTGTGACTCTAGAAGAGGGGAAAAGTGCTGAAAA
____________________________________________________________
consensus CATGAGCAAAGTTGGTAGGAAGGGAGTTGTGACTCTAGAAGAGGGGAAAAGTGCTGAAAA
. : . : . : . : . : . :
JMFS027D12- CAGTCTACGTGTTGTAGAAGGAATGCAATTTGATAGAGGTTACATTTCACCATACTTTGT
____________________________________________________________
consensus CAGTCTACGTGTTGTAGAAGGAATGCAATTTGATAGAGGTTACATTTCACCATACTTTGT
. : . : . : . : . : . :
JMFS027D12- AACTGATAGTGAGAAAATGGCTGTTGAATATGATAACTGTAAGTTACTACTGGTTGACAA
____________________________________________________________
consensus AACTGATAGTGAGAAAATGGCTGTTGAATATGATAACTGTAAGTTACTACTGGTTGACAA
. : . : . : . : . : . :
JMFS027D12- AAAAATAACAAATGCAAGGGATCTTATTAATGTATTGGAAAGTGCCATCAGAAGTGGTTT
____________________________________________________________
consensus AAAAATAACAAATGCAAGGGATCTTATTAATGTATTGGAAAGTGCCATCAGAAGTGGTTT
. : . : . : . : . : . :
JMFS027D12- TCCCATTCTGATAATTGCTGAAGATATTGAACAAGAAGCTCTTGCAACCTTGGTGGTGAA
____________________________________________________________
consensus TCCCATTCTGATAATTGCTGAAGATATTGAACAAGAAGCTCTTGCAACCTTGGTGGTGAA
. : . : . : . : . : . :
JMFS027D12- TAAACTTAGGGGTGCATTGAAGGTTGCTGCTCTCAAAGCTCCTGGTTTTGGTGAACGGAA
rJMSF002I10+ TGAACGCAA
____________________________________________________________
consensus TAAACTTAGGGGTGCATTGAAGGTTGCTGCTCTCAAAGCTCCTGGTTTTGGTGAACGGAA
. : . : . : . : . : . :
JMFS027D12- ATCCCAGTATCTTGATGATATAGCAATTCTTACTGGAGGAACTGTAATTAGGGAAGAGGT
rJMSF002I10+ ATCCCAGTACCTTGATGATATAGCAATCGTTACTGGAGGAACTGTAATTAGGGAAGAGGT
____________________________________________________________
consensus ATCCCAGTATCTTGATGATATAGCAATTGTTACTGGAGGAACTGTAATTAGGGAAGAGGT
. : . : . : . : . : . :
JMFS027D12- TGGCCTTAGCTTANACAAGGCTGACAGTGATGTCCTTGGTCATGCTGCCAAG
rJMSF002I10+ TGGCCTTAGCTTAGACAAGGCTGACAGTGATGTCCTTGGTCATGCTGCCAAGGTAGTCCT
____________________________________________________________
consensus TGGCCTTAGCTTAGACAAGGCTGACAGTGATGTCCTTGGTCATGCTGCCAAGGTAGTCCT
. : . : . : . : . : . :
rJMSF002I10+ AACTAAGGACTCTGCGACAATTGTTGGCGATGGCAGCACCAAGGAAGAAGTTAGTAAGCG
____________________________________________________________
consensus AACTAAGGACTCTGCGACAATTGTTGGCGATGGCAGCACCAAGGAAGAAGTTAGTAAGCG
. : . : . : . : . : . :
rJMSF002I10+ TGTTGCACAAATTAAAAACCTTATTGAGGTTGCAGAGCAAGATTATGAGAAGGAAAAGTT
____________________________________________________________
consensus TGTTGCACAAATTAAAAACCTTATTGAGGTTGCAGAGCAAGATTATGAGAAGGAAAAGTT
. : . : . : . : . : . :
rJMSF002I10+ AAACGAAAGAATTGAAAAATTATTAAGAGGTTGGTGCACAAACTAAAATAGAACTAAAAG
rJMSF022E04+ AGGTTGGTGCACAAACTGAAACAGAACTAAAAG
rJMSF051A10+ AGGTTGGTGCACAAACTGAAACAGAACTAAAAG
____________________________________________________________
consensus AAACGAAAGAATTGAAAAATTATTAAGAGGTTGGTGCACAAACTGAAACAGAACTAAAAG
. : . : . : . : . : . :
rJMSF002I10+ AAAAGAAGCTTAGAGTGGAAGATGCCTTAAATGCAACAAAGGCTGCTGTTGAAGAAGACA
rJMSF022E04+ AAAAGAAACTTCGAGTGGAAGATGCCTTGAATGCAACAAAGGCTGCTGTTGAGGAAGGCA
rJMSF051A10+ AAAAGAAACTTCGAGTGGAAGATGCCTTGAATGCAACAAAGGCTGCTGTTGAGGAAGGCA
____________________________________________________________
consensus AAAAGAAACTTCGAGTGGAAGATGCCTTGAATGCAACAAAGGCTGCTGTTGAGGAAGGCA
. : . : . : . : . : . :
rJMSF002I10+ TTGTTGTTGGAGGTGGATGCACTCTTTTGAGGCTTTCTTCAAAAGTTGATGCCCTTAAGG
rJMSF022E04+ TTGTTGTTGGGGGTGGATGCACTCTTTTGAGGCTTTCTTCAAAAGTTGATGCCCTTAAGG
rJMSF051A10+ TTGTTGTTGGGGGTGGATGCACTCTTTTGAGGCTTTCTTCAAAAGTTGATGCCCTTAAGG
rJMFF009D21+ TTTTGAGGCTTTNTTCAAAAGTTGATGCCCTTAAGG
JMFS110G04- ACTCTTTTGAGGCTTTCTTCAAAAGTTGATGCCCTTAAGG
____________________________________________________________
consensus TTGTTGTTGGGGGTGGATGCACTCTTTTGAGGCTTTCTTCAAAAGTTGATGCCCTTAAGG
. : . : . : . : . : . :
rJMSF002I10+ AGAGCTCTGAGAATGATGAGGAGAAGGTTGGAGCCGATATTGTCAAAAGAGCATTGAGTT
rJMSF022E04+ AGAGCCTTGAGAATGATGAGGAGAAGGTTGGAGCCGATATTGTCAAAAGAGCATTGAGTT
rJMSF051A10+ AGAGCCTTGAGAATGATGAGGAGAAGGTTGGAGCCGATATTGTCAAAAGAGCATTGAGTT
rJMFF009D21+ AGAGCCTTGAGAATGATGAGGAGAAGGTTGGAGCCGATATTGTCAAAAGAGCATTGAGTT
JMFS110G04- AGAGCCTTGAGAATGATGAGGAGAAGGTTGGAGCCGATATTGTCAAAAGAGCATTGAGTT
____________________________________________________________
consensus AGAGCCTTGAGAATGATGAGGAGAAGGTTGGAGCCGATATTGTCAAAAGAGCATTGAGTT
. : . : . : . : . : . :
rJMSF002I10+ ACCCTTCGAAGTTGATTGCAAAAAATGCTGGTGTTAATGGAAG---TGTTAGTGAGAAGG
rJMSF022E04+ ACCCTTTGAAGTTGATTGCAAAAAATGCTGGTGTTAATGGAAGTGTTGTTAGTGAGAAGG
rJMSF051A10+ ACCCTTTGAAGTTGATTGCAAAAAATGCTGGTGTTAATGGAAGTGTTGTTAGTGAGAAGG
rJMFF009D21+ ACCCTTTGAAGTTGATTGCAAAAAATGCTGGTGTTAATGGAAGTGTTGTTAGTGAGAAGG
JMFS110G04- ACCCTTTGAAGTTGATTGCAAAAAATGCTGGTGTTAATGGAAGTGTTGTTAGTGAGAAGG
____________________________________________________________
consensus ACCCTTTGAAGTTGATTGCAAAAAATGCTGGTGTTAATGGAAGTGTTGTTAGTGAGAAGG
. : . : . : . : . : . :
rJMSF002I10+ TGCTTTCAAGTGACAACCCAAAATATGGATACAAT
rJMSF022E04+ TGCTTTCAAGTGACAACCCAAAATATGGATACAATGCTGCGACAGGCAACTATGAAGACT
rJMSF051A10+ TGCTTTCAAGTGACAACCCAAAATATGGATACAATGCTGCGACAGGCAACTATGAAGACT
rJMFF009D21+ TGCTTTCAAGTGACAACCCAAAATATGGATACAATGCTGCGACAGGCAACTATGAAGACT
JMFS110G04- TGCTTTCAAGTGACAACCCAAAATATGGATACAATGCTGCGACAGGCAACTATGAAGACT
____________________________________________________________
consensus TGCTTTCAAGTGACAACCCAAAATATGGATACAATGCTGCGACAGGCAACTATGAAGACT
. : . : . : . : . : . :
rJMSF022E04+ TGATGGCTGCTGGAATTATTGATCCAACCAAGGTGGTGAGATGTTGTTTAGAGCATGCTG
rJMSF051A10+ TGATGGCTGCTGGAATTATTGATCCAACCAAGGTGGTGAGATGTTGTTTAGAGCATGCTG
rJMFF009D21+ TGATGGCTGCTGGAATTATTGATCCAACCAAGGTGGTGAGATGTTGTTTAGAGCATGCTG
JMFS110G04- TGATGGCTGCTGGAATTATTGATCCAACCAAGGTGGTGAGATGTTGTTTAGAGCATGCTG
rJMFF049M05+ TGATCCAACCAAGGTGGTGAGATGTTGTTTAGAGCATGCTG
____________________________________________________________
consensus TGATGGCTGCTGGAATTATTGATCCAACCAAGGTGGTGAGATGTTGTTTAGAGCATGCTG
. : . : . : . : . : . :
rJMSF022E04+ CATCTGTGGCAAAGACATTCTTGATGTCAGATTGTGTGGTGGTTGAGATAAAGGAGCCCG
rJMSF051A10+ CATCTGTGGCAAAGACATTCTTGATGTCAGATTGTGTGGTGGTTGAGATAAAGGAGCCCG
rJMFF009D21+ CATCTGTGGCAAAGACATTCTTGATGTCAGATTGTGTGGTGGTTGAGATAAAGGAGCCCG
JMFS110G04- CATCTGTGGCAAAGACATTCTTGATGTCAGATTGTGTGGTGGTTGAGATAAAGGAGCCCG
rJMFF049M05+ CATCTGTGGCAAAGACATTCTTGATGTCAGATTGTGTGGTGGTTGAGATAAAGGAGCCCG
____________________________________________________________
consensus CATCTGTGGCAAAGACATTCTTGATGTCAGATTGTGTGGTGGTTGAGATAAAGGAGCCCG
. : . : . : . : . : . :
rJMSF022E04+ AACCAGTCATGGCTGGGAACCCCATGGATAACTCCGGATACGGTTACTAGGTAAGATCAA
rJMSF051A10+ AACCAGTCATGGCTGGGAACCCCATGGATAACTCCGGATACGGTTACTAGGTAAGATCAA
rJMFF009D21+ AACCAGTCATGGCTGGGAACCCCATGGATAACTCCGGATACGGTTACTAGGTAAGATCAA
JMFS110G04- AACCAGTCATGGCTGGGAACCCCATGGATAACTCCGGATACGGTTACTAGGTAAGATCAA
rJMFF048L08+ TCATGGCTGGGAACCCCATGGATAACTCCGGATACGGTTACTAGGTAAGATCAA
rJMFF049M05+ AACCAGTCATGGCTGGGAACCCCATGGATAACTCCGGATACGGTTACTAGGTAAGATCAA
____________________________________________________________
consensus AACCAGTCATGGCTGGGAACCCCATGGATAACTCCGGATACGGTTACTAGGTAAGATCAA
. : . : . : . : . : . :
rJMSF022E04+ CAGAGTTGGAGACATGGCATGAATGACGTATAAGGATCTGGCTCCGGGATGGATAATAAA
rJMSF051A10+ CAGAGTTGGAGACATGGCATGAATGACGTATAAGGATCTGGCTCCGGGATGGATAATAAA
rJMFF009D21+ CAGAGTTGGAGACATGGCATGAATGACGTATAAGGATCTGGCTCCGGGATGGATAATAAA
JMFS110G04- CAGAGTTGGAGACATGGCATGAATGACGTATAAGGATCTGGCTCCGGGATGGATAATAAA
rJMFF048L08+ CAGAGTTGGAGACATGGCATGAATGACGTATAAGGATCTGGCTCCGGGATGGATAATAAA
rJMFF049M05+ CAGAGTTGGAGACATGGCATGAATGACGTATAAGGATCTGGCTCCGGGATGGATAATAAA
____________________________________________________________
consensus CAGAGTTGGAGACATGGCATGAATGACGTATAAGGATCTGGCTCCGGGATGGATAATAAA
. : . : . : . : . : . :
rJMSF022E04+ AACCACAAAGCTGTGTAATTGGCTGCCGAAGCAGTTTTTGTAAATCTAGTTGTTATTCTT
rJMSF051A10+ AACCACAAAGCTGTGTAATTGGCTGCCGAAGCAGTTTTTGTAAATCTAGTTGTTATTCTT
rJMFF009D21+ AACCACAAAGCTGTGTAATTGGCTGCCGAAGCAGTTTTTGTAAATCTAGTTGTTATTCTT
JMFS110G04- AACCACAAAGCTGTGTAATTGGCTGCCGAAGCAGTTTTTGTAAATCTAGTTGTTATTCTT
rJMFF048L08+ AACCACAAAGCTGTGTAATTGGCTGCCGAAGCAGTTTTTGTAAATCTAGTTGTTATTCTT
rJMFF049M05+ AACCACAAAGCTGTGTAATTGGCTGCCGAAGCAGTTTTTGTAAATCTAGTTGTTATTCTT
____________________________________________________________
consensus AACCACAAAGCTGTGTAATTGGCTGCCGAAGCAGTTTTTGTAAATCTAGTTGTTATTCTT
. : . : . : . : . : . :
rJMSF022E04+ TATGGAAGAATGTAAAAATCCTGGCAGGGTTTTAGCCTTCCAGGGTGCGGNGAGAGAAAA
rJMSF051A10+ TATGGAAGAATGTAAAAATCCTGGCAGGGTTTTAGCCTTCCAGGGTGCGGTGAGAGAAAA
rJMFF009D21+ TATGGAAGAATGTAAAAATCCTGGCAGGGTTTTAGCCTTCCAGGGTGCGGTGAGAGAAAA
JMFS110G04- TATGGAAGAATGTAAAAATCCTGGCAGGGTTTTAGCCTTCCAGGGTGCGGTGAGAGAAAA
rJMFF048L08+ TATGGAAGAATGTAAAAATCCTGGCAGGGTTTTAGCCTTCCAGGGTGCGGTGAGAGAAAA
rJMFF049M05+ TATGGAAGAATGTAAAAATCCTGGCAGGGTTTTAGCCTTCCAGGGTGCGGTGAGAGAAAA
____________________________________________________________
consensus TATGGAAGAATGTAAAAATCCTGGCAGGGTTTTAGCCTTCCAGGGTGCGGTGAGAGAAAA
. : . : . : . : . : . :
rJMSF022E04+ TTGCTAG
rJMSF051A10+ TTGCTAGAC
rJMFF009D21+ TTGCTAGACTTGCAACGCATTGTACGATTTGATGACAGCAT
JMFS110G04- TTGCTAGACTTGCAACGCATTGTACGATTTGATGACAGCAT
rJMFF048L08+ TTGCTAGACTTGCAACGCATTGTACGATTTGATGACAGCATTATAGGATGTTTACACTCC
rJMFF049M05+ TTGCTAGACTTGCAACGCATTGTACGATTTGATGACAGCATTATAGGATGTTTACACTCC
____________________________________________________________
consensus TTGCTAGACTTGCAACGCATTGTACGATTTGATGACAGCATTATAGGATGTTTACACTCC