Contig 005554:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013B05Sequence340006478 (4)ref|XP_007140432.1|3e-10hypothetical protein PHAVU_008G111400g [Phaseolus vulgaris] gb|ESW12426.1| hypot681005554 (3)ref|XP_009778445.1|1e-123PREDICTED: protein SSUH2 homolog isoform X3 [Nicotiana sylvestris]
JMFF049D18Sequence611006478 (4)ref|XP_009586657.1|5e-66PREDICTED: protein SSUH2 homolog isoform X2 [Nicotiana tomentosiformis]572005554 (3)ref|XP_009778445.1|2e-83PREDICTED: protein SSUH2 homolog isoform X3 [Nicotiana sylvestris]
JMSF018F03Sequence256006478 (4)ref|XP_007140432.1|7e-11hypothetical protein PHAVU_008G111400g [Phaseolus vulgaris] gb|ESW12426.1| hypot745005554 (3)ref|XP_009778445.1|3e-121PREDICTED: protein SSUH2 homolog isoform X3 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF018F03+                                     AAGAGTTCCTCATTCTGAAAAGATTGACAAATG
                      ____________________________________________________________
consensus                                        AAGAGTTCCTCATTCTGAAAAGATTGACAAATG
 
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rJMFF013B05+                                             CCCAATTGTAATGCAGATCATGACC
rJMSF018F03+          CCCAGGTTGTCGTGGACTAGGAAGTGTAGTCTGTCCCCAATTGTAATGCAGATCATGACC
                      ____________________________________________________________
consensus             CCCAGGTTGTCGTGGACTAGGAAGTGTAGTCTGTCCCCAATTGTAATGCAGATCATGACC
 
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rJMFF013B05+          CTGGATTCTACAATGTGGGCCAAATGTCTAAGTGTCCTACTTGCTATGGGAGAGGACTAC
rJMSF018F03+          CTGGATTCTACAATGTGGGCCAAATGTCTAAGTGTCCTACTTGCTATGGGAGAGGACTAC
                      ____________________________________________________________
consensus             CTGGATTCTACAATGTGGGCCAAATGTCTAAGTGTCCTACTTGCTATGGGAGAGGACTAC
 
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rJMFF013B05+          TTGCATACAAAGATGGATCTGACATAATATGTCGAAATTGTAAAGGTCATGGGAAACTTC
rJMSF018F03+          TTGCATACAAAGATGGATCTGACATAATATGTCGAAATTGTAAAGGTCATGGGAAACTTC
                      ____________________________________________________________
consensus             TTGCATACAAAGATGGATCTGACATAATATGTCGAAATTGTAAAGGTCATGGGAAACTTC
 
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rJMFF013B05+          CTTGTGCCAATTGCGAGTCCCGTGGTCTAATCAAATGTCAGACTTGTAAGGGAGGTGGCT
rJMSF018F03+          CTTGTGCCAATTGCGAGTCCCGTGGTCTAATCAAATGTCAGACTTGCAAGGGAGGTGGCT
rJMFF049D18+                                      AATCAAATGTCAGACTTGCAAGGGAGGTGGCT
                      ____________________________________________________________
consensus             CTTGTGCCAATTGCGAGTCCCGTGGTCTAATCAAATGTCAGACTTGCAAGGGAGGTGGCT
 
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rJMFF013B05+          CATTTTTGTCATACAAAGTAGCTATTGTCAGATGGAAGACACTCTCAACGCGAAAAGTGA
rJMSF018F03+          CATTTTTGTCATACAAAGTAGCTATTGTCAGATGGAAGACACTCTCAACGCGAAAAGTGA
rJMFF049D18+          CATTTTTGTCATACAAAGTAGCTATTGTCAGATGGAAGACACTCTCAACGCGAAAAGTGA
                      ____________________________________________________________
consensus             CATTTTTGTCATACAAAGTAGCTATTGTCAGATGGAAGACACTCTCAACGCGAAAAGTGA
 
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rJMFF013B05+          ATGCTACAATTGGAGCAGCCTCGGTTCCAGACGACGTCTTCCACAAAGCTAAAGGAGTCC
rJMSF018F03+          ATGCTACAAGTGGAGCAGCCTCGGTTCCAGACGACGTCTTCCACAAAGCTAAAGGAGTCC
rJMFF049D18+          ATGCTACAAGTGGAGCAGCCTCGGTTCCAGACGACGTCTTCCACAAAGCTAAAGGAGTCC
                      ____________________________________________________________
consensus             ATGCTACAAGTGGAGCAGCCTCGGTTCCAGACGACGTCTTCCACAAAGCTAAAGGAGTCC
 
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rJMFF013B05+          AGCTATGCAATAACCAAGCGCACCAGTGCACGCCTGCCTATTTCGCGGATTCATATTTCC
rJMSF018F03+          AGCTATGCAATAACCAAGCGCACCAGTGCACGCCTGCCTATTTCGCGGATTCATATTTCC
rJMFF049D18+          AGCTATGCAATAACCAAGCGCACCAGTGCACGCCTGCCTATTTCGCGGATTCATATTTCC
                      ____________________________________________________________
consensus             AGCTATGCAATAACCAAGCGCACCAGTGCACGCCTGCCTATTTCGCGGATTCATATTTCC
 
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rJMFF013B05+          TCAACAAGTTTTCTTCTGAGGTCATTGCAGAGAGGGCTGATGTGCCACAAACCGCGAGGG
rJMSF018F03+          TCAACAAGTTTTCTTCTGAGGTCATTGCAGAGAGGGCTGATGTGCCACAAACCGCGAGGG
rJMFF049D18+          TCAACAAGTTTTCTTCTGAGGTCATTGCAGAGAGGGCTGATGTGCCACAAACCGCGAGGG
                      ____________________________________________________________
consensus             TCAACAAGTTTTCTTCTGAGGTCATTGCAGAGAGGGCTGATGTGCCACAAACCGCGAGGG
 
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rJMFF013B05+          TCATATGCGAAAGGCATACCATCTCGGTGGTTCCAGTGACCCGTGTGACCATGACTCACC
rJMSF018F03+          TCATATGCGAAAGGCATACCATCTCGGTGGTTCCAGTGACCCGTGTGACCATGACTCACC
rJMFF049D18+          TCATATGCGAAAGGCATACCATCTCGGTGGTTCCAGTGACCCGTGTGACCATGACTCACC
                      ____________________________________________________________
consensus             TCATATGCGAAAGGCATACCATCTCGGTGGTTCCAGTGACCCGTGTGACCATGACTCACC
 
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rJMFF013B05+          ACAAACGCTCATTCAGTTTCTACATCATTGGAGTCAGCATGGAGGTGTACCTGTGCGACG
rJMSF018F03+          ACAAACGCTCATTCAGTTTCTACATCATTGGAGTCAGCATGGAGGTGTACCTGTGCGACG
rJMFF049D18+          ACAAACGCTCATTCAGTTTCTACATCATTGGAGTCAGCATGGAGGTGTACCTGTGCGACG
                      ____________________________________________________________
consensus             ACAAACGCTCATTCAGTTTCTACATCATTGGAGTCAGCATGGAGGTGTACCTGTGCGACG
 
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rJMFF013B05+          ACTACCCTTCGAGATTTTGCTGGGGTCTGTGCCCATGCTTGGAATGGTTGAATGCTTAAA
rJMSF018F03+          ACTACCCTTCGAGATTTTGCTGGGGTCTGTGCCCATGCTTGGAATGGTTGAATGCTTAAA
rJMFF049D18+          ACTACCCTTCGAGATTTTGCTGGGGTCTGTGCCCATGCTTGGGATGGTTGAATGCTTAAA
                      ____________________________________________________________
consensus             ACTACCCTTCGAGATTTTGCTGGGGTCTGTGCCCATGCTTGGAATGGTTGAATGCTTAAA
 
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rJMFF013B05+          ACTGTAAATTTTCTTGTGAGCAGAA                                   
rJMSF018F03+          ACTGTAAATTTTCTTGTGAGCAGAA                                   
rJMFF049D18+          ACTGTAAATTTTCTTGTGAGCAGAACAGTTGAGTACTTGTGTGAATTCTTTAGTAATGCT
                      ____________________________________________________________
consensus             ACTGTAAATTTTCTTGTGAGCAGAACAGTTGAGTACTTGTGTGAATTCTTTAGTAATGCT
 
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rJMFF049D18+          TCATTGTGATTCTTAAAATTGTTTGCAGTATTGAGAGAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus             TCATTGTGATTCTTAAAATTGTTTGCAGTATTGAGAGAAAAAAAAAAAACTCTCCAGGGT