| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005F13 | Sequence | 367 | 005550 (8) | gb|AFK47642.1| | 5e-43 | unknown [Lotus japonicus] | 733 | 005550 (8) | emb|CDO99920.1| | 1e-52 | unnamed protein product [Coffea canephora] |
| JMFF019L01 | Sequence | 529 | 005550 (8) | ref|XP_009622315.1| | 2e-76 | PREDICTED: multiple myeloma tumor-associated protein 2 homolog [Nicotiana tomen | 758 | 005550 (8) | emb|CDO99920.1| | 5e-69 | unnamed protein product [Coffea canephora] |
| JMFF024B24 | Sequence | 530 | 005550 (8) | ref|XP_009622315.1| | 2e-76 | PREDICTED: multiple myeloma tumor-associated protein 2 homolog [Nicotiana tomen | 170 | 005550 (8) | |||
| JMFF048J02 | Sequence | 428 | 005550 (8) | ref|XP_007157708.1| | 2e-65 | hypothetical protein PHAVU_002G091600g [Phaseolus vulgaris] gb|ESW29702.1| hypot | 375 | 005550 (8) | |||
This contig is upended
. : . : . : . : . : . :
JMFF005F13- AATTGTGGCA
JMFF019L01- AATTGTGGCA
JMFF024B24- AATTGTGGCA
____________________________________________________________
consensus AATTGTGGCA
. : . : . : . : . : . :
JMFF005F13- GCTATTTGCAAATCGGGAACGGAATCGCAATCGAAATCGCGCTGACGGCGAGACAGTGAG
JMFF019L01- GCTATTTGCAAATCGGGAACGGAATCGCAATCGAAATCGCGCTGACGGCGAGACAGTGAG
JMFF048J02- ATCGCAATCGAAATCACGCTGACGGCGAGACAGTGAG
JMFF024B24- GCTATTTGCAAATCGGGAACGGAATCGCAATCGAAATCGCGCTGACGGCGAGACAGTGAG
____________________________________________________________
consensus GCTATTTGCAAATCGGGAACGGAATCGCAATCGAAATCGCGCTGACGGCGAGACAGTGAG
. : . : . : . : . : . :
JMFF005F13- GCAGGGAAGAATATGTATCATCCGACTAGAGGTGGTGTTCGCGGTGGTCGCGATCAATTT
JMFF019L01- GCAGGGAAGAATATGTATCATCCGACTAGAGGTGGTGTTCGCGGTGGTCGCGATCAATTT
JMFF048J02- GCAGGGAAGAATATGTATCATCCGACTAGAGGTGGTGTTCGCGGTGGTCGCGATCAATTT
JMFF024B24- GCAGGGAAGAATATGTATCATCCGACTAGAGGTGGTGTTCGCGGTGGTCGCGATCAATTT
rJMFF019L01+ GTTCGCGGTGGTCGCGATCAATTT
____________________________________________________________
consensus GCAGGGAAGAATATGTATCATCCGACTAGAGGTGGTGTTCGCGGTGGTCGCGATCAATTT
. : . : . : . : . : . :
JMFF005F13- GCCTGGGATGATGTAAAAGTTGATAAACATCGTGAAAACTATATAGGCCATAGTATCAAA
JMFF019L01- GCCTGGGATGATGTAAAAGTTGATAAACATCGTGAAAACTATATAGGCCATAGTATCAAA
JMFF048J02- GCCTGGGATGATGTAAAAGTTGATAAACATCGTGAAAACTATATAGGCCATAGTATCAAA
JMFF024B24- GCCTGGGATGATGTAAAAGTTGATAAACATCGTGAAAACTATATAGGCCATAGTATCAAA
rJMFF019L01+ GCCTGGGATGATGTAAAAGTTGATAAACATCGTGAAAACTATATAGGCCATAGTATCAAA
rJMFF005F13+ ACTATATAGGCCATAGTATCAAA
____________________________________________________________
consensus GCCTGGGATGATGTAAAAGTTGATAAACATCGTGAAAACTATATAGGCCATAGTATCAAA
. : . : . : . : . : . :
JMFF005F13- GCACCAGTTGGAAGATGGCAGAAAGGTAAAGACCTCTTCTGGTATGCACGTGATAAGAAA
JMFF019L01- GCACCAGTTGGAAGATGGCAGAAAGGTAAAGACCTCTTCTGGTATGCACGTGATAAGAAA
JMFF048J02- GCACCAGTTGGAAGATGGCAGAAAGGTAAAGACCTCTTCTGGTATGCACGTGATAAGAAA
JMFF024B24- GCACCAGTTGGAAGATGGCAGAAAGGTAAAGACCTCTTCTGGTATGCACGTGATAAGAAA
rJMFF019L01+ GCACCAGTTGGAAGATGGCAGAAAGGTAAAGACCTCTTNTGGTATGCACGTGATAAGAAA
rJMFF005F13+ GCACCAGTTGGAAGATGGCAGAAAGGTAAAGACCTCTTCTGGTATGCACGTGATAAGAAA
____________________________________________________________
consensus GCACCAGTTGGAAGATGGCAGAAAGGTAAAGACCTCTTCTGGTATGCACGTGATAAGAAA
. : . : . : . : . : . :
JMFF005F13- TCTCAACAATCAGATATGGATGCAGCTAAAGAAGAGATACAAAGGATTAAGGAAGAGGAG
JMFF019L01- TCTCAACAATCAGATATGGATGCAGCTAAAGAAGAGATACAAAGGATTAAGGAAGAGGAG
JMFF048J02- TCTCAACAATCAGATATGGATGCAGCTAAAGAAGAGATACAAAGGATTAAGGAAGAGGAG
JMFF024B24- TCTCAACAATCAGATATGGATGCAGCTAAAGAAGAGATACAAAGGATTAAGGAAGAGGAG
rJMFF019L01+ TCTCAACAATCAGATATGGATGCAGCTAAAGAAGAGATACAAAGGATTAAGGAAGAGGAG
rJMFF005F13+ TCTCAACAATCAGATATGGATGCAGCTAAAGAAGAGATACAAAGGATTAAGGAAGAGGAG
____________________________________________________________
consensus TCTCAACAATCAGATATGGATGCAGCTAAAGAAGAGATACAAAGGATTAAGGAAGAGGAG
. : . : . : . : . : . :
JMFF005F13- GAGCAAGCCATGCGGGAAGCTCTAGGCCTAGCTCCTAAACGTGCTACCCAGTCTCAA
JMFF019L01- GAGCAAGCCATGCGGGAAGCTCTAGGCCTAGCTCCTAAACGTGCTACCCAGTCTCAAGGT
JMFF048J02- GAGCAAGCCATGCGGGAAGCTCTAGGCCTAGCTCCTAAACGTGCTACCCAGTCTCAAGGT
JMFF024B24- GAGCAAGCCATGCGGGAAGCTCTAGGCCTAGCTCCTAAACGTGCTACCCAGTCTCAAGGT
rJMFF019L01+ GAGCAAGCCATGCGGGAAGCTCTAGGCCTAGCTCCTAAACGTGCTACCCAGTCTCAAGGT
rJMFF005F13+ GAGCAAGCCATGCGGGAAGCTCTAGGCCTAGCTCCTAAACGTGCTACCCAGTCTCAAGGT
____________________________________________________________
consensus GAGCAAGCCATGCGGGAAGCTCTAGGCCTAGCTCCTAAACGTGCTACCCAGTCTCAAGGT
. : . : . : . : . : . :
JMFF019L01- AACCGACTAGACAAGCATGAGTTCTCTGAGCTTGTGAAACGAGGCTCCACAGCTGAAGAC
JMFF048J02- AACCGACTAGACAAGCATGAGTTCTCTGAGCTTGTGAAACGAGGCTCCACAGCTGAAACA
JMFF024B24- AACCGACTAGACAAGCATGAGTTCTCTGAGCTTGTGAAACGAGGCTCCACAGCTGAAGAC
rJMFF019L01+ AACCGACTAGACAAGCATGAGTTCTCTGAGCTTGTGAAACGAGGCTCCACAGCTGAAGAC
rJMFF005F13+ AACCGACTAGACAAGCATGAGTTCTCTGAGCTTGTGAAACGAGGCTCCACAGCTGAAGAC
____________________________________________________________
consensus AACCGACTAGACAAGCATGAGTTCTCTGAGCTTGTGAAACGAGGCTCCACAGCTGAAGAC
. : . : . : . : . : . :
JMFF019L01- CTGGGAGCTGGCCACGCTGAAGCAGCTCGGGTTCATGGCCTTGGGTTTTCTAAAGTGCCT
JMFF048J02- CTGGGAGCTGGCCACGCTGAAGCAGCTCGGG
JMFF024B24- CTGGGAGCTGGCCACGCTGAAGCAGCTCGGGTTCATGGCCTTGGGTTTTCTAAAGTGCCT
rJMFF019L01+ CTGGGAGCTGGCCACGCTGAAGCAGCTCGGGTTCATGGCCTTGGGTTTTCTAAAGTGCCT
rJMFF005F13+ CTGGGAGCTGGCCACGCTGAAGCAGCTCGGGTTCATGGCCTTGGGTTTTCTAAAGTGCCT
____________________________________________________________
consensus CTGGGAGCTGGCCACGCTGAAGCAGCTCGGGTTCATGGCCTTGGGTTTTCTAAAGTGCCT
. : . : . : . : . : . :
JMFF019L01- CAACCTTGGAAAGAATCAAGTTCACTGTCCAATCTTCCA
JMFF024B24- CAACCTTGGAAAGAATCAAGTTCACTGTCCAATCTTCCA
rJMFF019L01+ CAACCTTGGAAAGAATCAAGTTCACTGTCCAATCTTCCATCCAGTGAAAAGATGGAGCCT
rJMFF005F13+ CAACCTTGGAAAGAATCAAGTTCACTGTCCAATCTTCCATCCAGTGAAAAGATGGAGCCT
____________________________________________________________
consensus CAACCTTGGAAAGAATCAAGTTCACTGTCCAATCTTCCATCCAGTGAAAAGATGGAGCCT
. : . : . : . : . : . :
rJMFF019L01+ TCAGGAAACACAAATGTGCAGAGGCCCGAGGCGCCCACTAGAAGCGAGCAAGAAGGCTCA
rJMFF005F13+ TCAGGAAACACAAATGTGCAGAGGCCCGAGGCGCCCACTAGAAGCGAGCAAGAAGGCTCA
rJMFF048J02+ GGCCCGGGGCGCCCTCTAGAAGCGAGCAAGAAGGCTCA
____________________________________________________________
consensus TCAGGAAACACAAATGTGCAGAGGCCCGAGGCGCCCACTAGAAGCGAGCAAGAAGGCTCA
. : . : . : . : . : . :
rJMFF019L01+ GATAATGAAAGAAGCCAGAAGAAGAGAAGACGCGAAGAGAAGAAACACGAGAAGTATGAT
rJMFF005F13+ GATAATGAAAGAAGCCAGAAGAAGAGAAGACGCGAAGAGAAGAAACACGAGAAGTATGAT
rJMFF048J02+ GATAATGAAAGAACCCCGAAGAAGGGAAGACGCGAAGAGAAGAACCCCGGGTAGTATGAT
____________________________________________________________
consensus GATAATGAAAGAAGCCAGAAGAAGAGAAGACGCGAAGAGAAGAAACACGAGAAGTATGAT
. : . : . : . : . : . :
rJMFF019L01+ AGGCGAGAGAAACAGGAGAAGCATGATAGGCAAGAGAAGCGACATTCTCGTGACTCGGAT
rJMFF024B24+ ACTCGGAT
rJMFF005F13+ AGGCGAGAGAAACAGGAGAAGCATGATAGGCAAGAGAAGCGACATTCTCGTGACTCGGAT
rJMFF048J02+ AGGCGAGGGAACCCGGGGAAGCCTTATAGGCAAGAGAAGCGCCATTTTCGTGTCTCGGAT
____________________________________________________________
consensus AGGCGAGAGAAACAGGAGAAGCATGATAGGCAAGAGAAGCGACATTCTCGTGACTCGGAT
. : . : . : . : . : . :
rJMFF019L01+ GAAAGGAGGAAACATAAGAGAGACAAGGAGAAGAGAAGACATGATTCTGATTAGCTGGCC
rJMFF024B24+ GAAAGGAGGAAACATAAGAGAGACAAGGAGAAGAGAAGACATGATTCNGATTAGCTGGCC
rJMFF005F13+ GAAAGGAGGAAACATAAGAGAGACAAGGAGAAGAGAAGACATGATTCTGATTAGCTGGCC
rJMFF048J02+ GAAAGGAGGAACCATAAGAGGGCCAAGGGGAGGGGAAGCCATGTTTTTGATTAGCTGGCC
____________________________________________________________
consensus GAAAGGAGGAAACATAAGAGAGACAAGGAGAAGAGAAGACATGATTCTGATTAGCTGGCC
. : . : . : . : . : . :
rJMFF019L01+ TTTGAATATGTATCAACTATCATGTACTCTTGTGGATGTGATTCAAAAGTTGCTACTGTT
rJMFF024B24+ TTTGAATATGTATCAACTATCATGTACTCTTGTGGATGTGATTCAAAAGTTGCTACTGTT
rJMFF005F13+ TTTGAATATGTATCAACTATCATGTACTCTTGTGGATGTGATTCAAAAGTTGCTACTGTT
rJMFF048J02+ TTTGAATATGTATCAACTTTCATGTACTTTTGGGGATGGGATTCAAAAGTTGCTACTGTT
____________________________________________________________
consensus TTTGAATATGTATCAACTATCATGTACTCTTGTGGATGTGATTCAAAAGTTGCTACTGTT
. : . : . : . : . : . :
rJMFF019L01+ ATTTT
rJMFF024B24+ ATTTTACTGGAAATTGATTCTGAATTCTTGCATATGATGATG
rJMFF005F13+ ATTTTACTGGAAATTGATTCTGAATTCTTGCATATGATGATGTTGGATGT
rJMFF048J02+ ATTTTTCGGGAAATTGATTTTGAATTCTTGCATATGATGATGTTGGATGTGGGTTAATAT
____________________________________________________________
consensus ATTTTACTGGAAATTGATTCTGAATTCTTGCATATGATGATGTTGGATGTGGGTTAATAT