Contig 005548:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008P14Sequence538000855 (10)ref|XP_009767335.1|146PREDICTED: uncharacterized protein LOC104218515 [Nicotiana sylvestris]747005548 (10)emb|CDP05978.1|1e-108unnamed protein product [Coffea canephora]
JMFF010B23Sequence547000855 (10)ref|XP_011082732.1|150PREDICTED: uncharacterized protein LOC105165426 [Sesamum indicum]746005548 (10)emb|CDP05978.1|2e-109unnamed protein product [Coffea canephora]
JMFF010H09Sequence585000855 (10)ref|XP_009767335.1|177PREDICTED: uncharacterized protein LOC104218515 [Nicotiana sylvestris]750005548 (10)emb|CDP05978.1|1e-108unnamed protein product [Coffea canephora]
JMFF011N05Sequence547000855 (10)ref|XP_011082732.1|95.1PREDICTED: uncharacterized protein LOC105165426 [Sesamum indicum]749005548 (10)emb|CDP05978.1|4e-110unnamed protein product [Coffea canephora]
JMFF043P03Sequence637000855 (10)ref|XP_009767335.1|198PREDICTED: uncharacterized protein LOC104218515 [Nicotiana sylvestris]605005548 (10)emb|CDP05978.1|2e-73unnamed protein product [Coffea canephora]
JMFF048G07Sequence399000855 (10)ref|XP_009767335.1|92.8PREDICTED: uncharacterized protein LOC104218515 [Nicotiana sylvestris]352005548 (10)emb|CDP05978.1|4e-18unnamed protein product [Coffea canephora]
JMFN004K22Sequence624005548 (10)emb|CDP05978.1|5e-94unnamed protein product [Coffea canephora]
JMSF034L20Sequence702000855 (10)ref|XP_009767335.1|228PREDICTED: uncharacterized protein LOC104218515 [Nicotiana sylvestris]731005548 (10)emb|CDP05978.1|3e-110unnamed protein product [Coffea canephora]
JMSF036M17Sequence679000855 (10)ref|XP_009767335.1|233PREDICTED: uncharacterized protein LOC104218515 [Nicotiana sylvestris]709005548 (10)emb|CDP05978.1|1e-105unnamed protein product [Coffea canephora]
JMSF038K18Sequence647000855 (10)ref|XP_009767335.1|216PREDICTED: uncharacterized protein LOC104218515 [Nicotiana sylvestris]899005548 (10)emb|CDP05978.1|3e-134unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF038K18+                          GTCTCGATGAAATTAACCTAGACGAAAATGATGCGGTAGATAAA
                      ____________________________________________________________
consensus                             GTCTCGATGAAATTAACCTAGACGAAAATGATGCGGTAGATAAA
 
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rJMSF038K18+          CTTATGAAGGATTTTGATACGTCTAATAATCAGGAAATTGATATCGATGAGTTTGTTGCT
                      ____________________________________________________________
consensus             CTTATGAAGGATTTTGATACGTCTAATAATCAGGAAATTGATATCGATGAGTTTGTTGCT
 
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rJMSF038K18+          GGAGTTGACAAATGGCTTGATGAGGTTCAAGTTTCCAGAAATGTCCCTGTAACACTTAAG
                      ____________________________________________________________
consensus             GGAGTTGACAAATGGCTTGATGAGGTTCAAGTTTCCAGAAATGTCCCTGTAACACTTAAG
 
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rJMSF034L20+           ATCTTGAGGATTTCCATGAGCAANCAAGAAGGGAGCATTACNTACTAGGGGCTGGGGAT
rJMSF038K18+          CATCTTGAGGATTTCCATGAGCAAACAAGAAGGGAGCATTACTTACTAGGGGCTGGGGAT
rJMFF011N05+              TTGAGGATTTCCATGAGCAAACAAGAAGGGAGCATTACTTACTAGGGGCTGGGGAT
rJMSF036M17+                          ATGAGCAAACAAGAAGGGAGCATTACTTACTAGGGGCTGGGGAT
rJMFF010B23+              TTGAGGATTTCCATGAGCAAACAAGAAGGGAGCATTACTTACTAGGGGCTGGGGAT
rJMFF008P14+               TGAGGATTTCCATGAGCAANCAAGAAGGGAGCATTACTTACTAGGGGCTGGGGAT
rJMFF010H09+               TGAGGATTTCCATGAGCAANCAAGAAGGGAGCATTACTTACTAGGGGCTGGGGAT
                      ____________________________________________________________
consensus             CATCTTGAGGATTTCCATGAGCAAACAAGAAGGGAGCATTACTTACTAGGGGCTGGGGAT
 
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JMFN004K22-                                        GAATCCCAAATGGACCTCAATTAAGGCTGTA
rJMSF034L20+          CAAAATGAAGAAGCTGATGAGGGAGTCGAGAATCCCAAATGGACCTCAATTAAGGCTGTA
rJMSF038K18+          CAAAATGAAGAAGCTGATGAGGGAGTCGAGAATCCCAAATGGACCTCAATTAAGGCTGTA
rJMFF011N05+          CAAAATGAAGAAGCTGATGAGGGAGTCGAGAATCCCAAATGGACCTCAATTAAGGCTGTA
rJMSF036M17+          CAAAATGAAGAAGCTGATGAGGGAGTCGAGAATCCCAAATGGACCTCAATTAAGGCTGTA
rJMFF010B23+          CAAAATGAAGAAGCTGATGAGGGAGTCGAGAATCCCAAATGGACCTCAATTAAGGCTGTA
rJMFF008P14+          CAAAATGAAGAAGCTGATGAGGGAGTCGAGAATCCCAAATGGACCTCAATTAAGGCTGTA
rJMFF010H09+          CAAAATGAAGAAGCTGATGAGGGAGTCGAGAATCCCAAATGGACCTCAATTAAGGCTGTA
                      ____________________________________________________________
consensus             CAAAATGAAGAAGCTGATGAGGGAGTCGAGAATCCCAAATGGACCTCAATTAAGGCTGTA
 
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JMFN004K22-           TTATTCTTGTTGCTGGGGACTGCCATTGCTGCTGCTTTTGCCGATCCCTTGGTAGATGCA
rJMSF034L20+          TTATTCTTGTTGCTGGGGACTGCCATTGCTGCTGCTTTTGCCGATCCCTTGGTAGATGCA
rJMSF038K18+          TTATTCTTGTTGCTGGGGACTGCCATTGCTGCTGCTTTTGCCGATCCCTTGGTAGATGCA
rJMFF011N05+          TTATTCTTGTTGCTGGGGACTGCCATTGCTGCTGCTTTTGCCGATCCCTTGGTAGATGCA
rJMSF036M17+          TTATTCTTGTTGCTGGGGACTGCCATTGCTGCTGCTTTTGCCGATCCCTTGGTAGATGCA
rJMFF010B23+          TTATTCTTGTTGCTGGGGACTGCCATTGCTGCTGCTTTTGCCGATCCCTTGGTAGATGCA
rJMFF008P14+          TTATTCTTGTTGCTGGGGACTGCCATTGCTGCTGCTTTTGCCGATCCCTTGGTAGATGCA
rJMFF010H09+          TTATTCTTGTTGCTGGGGACTGCCATTGCTGCTGCTTTTGCCGATCCCTTGGTAGATGCA
                      ____________________________________________________________
consensus             TTATTCTTGTTGCTGGGGACTGCCATTGCTGCTGCTTTTGCCGATCCCTTGGTAGATGCA
 
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JMFN004K22-           GTTGATAATTTCTCTACTGCCACAAGTATCCCGACATTCTTCATCTCATTCATTGCGCTG
rJMSF034L20+          GTTGATAATTTCTCTACTGCCACAAGTATCCCGACATTCTTCATCTCATTCATTGCGCTG
rJMSF038K18+          GTTGATAATTTCTCTACTGCCACAAGTATCCCGACATTCTTCATCTCATTCATTGCGCTG
rJMFF011N05+          GTTGATAATTTCTCTACTGCCACAAGTATCCCGACATTCTTCATCTCATTCATTGCGCTG
rJMSF036M17+          GTTGATAATTTCTCTACTGCCACAAGTATCCCGACATTCTTCATCTCATTCATTGCGCTG
rJMFF010B23+          GTTGATAATTTCTCTACTGCCACAAGTATCCCGACATTCTTCATCTCATTCATTGCGCTG
rJMFF008P14+          GTTGATAATTTCTCTACTGCCACAAGTATCCCGACATTCTTCATCTCATTCATTGCGCTG
rJMFF010H09+          GTTGATAATTTCTCTACTGCCACAAGTATCCCGACATTCTTCATCTCATTCATTGCGCTG
rJMFF043P03+                   TTCTCTACTGCCACAAGTATCCCGACATTCTTCATCTCATTCATTGCGCTG
                      ____________________________________________________________
consensus             GTTGATAATTTCTCTACTGCCACAAGTATCCCGACATTCTTCATCTCATTCATTGCGCTG
 
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JMFN004K22-           CCATTGGCAACCAACTCAAGTGAGGCTGTCTCAGCAATCATCTTTGCGAGCAGGAAAAAG
rJMSF034L20+          CCATTGGCAACCAACTCAAGTGAGGCTGTCTCAGCAATCATCTTTGCGAGCAGGAAAAAG
rJMSF038K18+          CCATTGGCAACCAACTCAAGTGAGGCTGTCTCAGCAATCATCTTTGCGAGCAGGAAAAAG
rJMFF011N05+          CCATTGGCAACCAACTCAAGTGAGGCTGTCTCAGCAATCATCTTTGCGAGCAGGAAAAAG
rJMSF036M17+          CCATTGGCAACCAACTCAAGTGAGGCTGTCTCAGCAATCATCTTTGCGAGCAGGAAAAAG
rJMFF010B23+          CCATTGGCAACCAACTCAAGTGAGGCTGTCTCAGCAATCATCTTTGCGAGCAGGAAAAAG
rJMFF008P14+          CCATTGGCAACCAACTCAAGTGAGGCTGTCTCAGCAATCATCTTTGCGAGCAGGAAAAAG
rJMFF010H09+          CCATTGGCAACCAACTCAAGTGAGGCTGTCTCAGCAATCATCTTTGCGAGCAGGAAAAAG
rJMFF043P03+          CCATTGGCAACCAACTCAAGTGAGGCTGTCTCAGCAATCATCTTTGCGAGCAGGAAAAAG
                      ____________________________________________________________
consensus             CCATTGGCAACCAACTCAAGTGAGGCTGTCTCAGCAATCATCTTTGCGAGCAGGAAAAAG
 
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JMFN004K22-           CTTAGATCTGCATCACTAACGTTCTCTGAGTTATATGGAGCGGTGACTATGAACAATGTC
rJMSF034L20+          CTTAGATCTGCATCACTAACGTTCTCTGAGTTATATGGAGCGGTGACTATGAACAATGTC
rJMSF038K18+          CTTAGATCTGCATCACTAACGTTCTCTGAGTTATATGGAGCGGTGACTATGAACAATGTC
rJMFF011N05+          CTTAGATCTGCATCACTAACGTTCTCTGAGTTATATGGAGCGGTGACTATGAACAATGTC
rJMSF036M17+          CTTAGATCTGCATCACTAACGTTCTCTGAGTTATATGGAGCGGTGACTATGAACAATGTC
rJMFF010B23+          CTTAGATCTGCATCACTAACGTTCTCTGAGTTATATGGAGCGGTGACTATGAACAATGTC
rJMFF008P14+          CTTAGATCTGCATCACTAACGTTCTCTGAGTTATATGGAGCGGTGACTATGAACAATGTC
rJMFF010H09+          CTTAGATCTGCATCACTAACGTTCTCTGAGTTATATGGAGCGGTGACTATGAACAATGTC
rJMFF043P03+          CTTAGATCTGCATCACTAACGTTCTCTGAGTTATATGGAGCGGTGACTATGAACAATGTC
                      ____________________________________________________________
consensus             CTTAGATCTGCATCACTAACGTTCTCTGAGTTATATGGAGCGGTGACTATGAACAATGTC
 
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JMFN004K22-           CTTTGCCTGTCGGTGTTCCTTGCTCTTGTTTATGCCAGAGGATTAACATGGGACTTCTCA
rJMSF034L20+          CTTTGCCTGTCGGTGTTCCTTGCTCTTGTTTATGCCAGAGGATTAACATGGGACTTCTCA
rJMSF038K18+          CTTTGCCTGTCGGTGTTCCTTGCTCTTGTTTATGCCAGAGGATTAACATGGGACTTCTCA
rJMFF011N05+          CTTTGCCTGTCGGTGTTCCTTGCTCTTGTTTATGCCAGAGGATTAACATGGGACTTCTCA
rJMSF036M17+          CTTTGCCTGTCGGTGTTCCTTGCTCTTGTTTATGCCAGAGGATTAACATGGGACTTCTCA
rJMFF010B23+          CTTTGCCTGTCGGTGTTCCTTGCTCTTGTTTATGCCAGAGGATTAACATGGGACTTCTCA
rJMFF008P14+          CTTTGCCTGTCGGTGTTCCTTGCTCTTGTTTATGCCAGAGGATTAACATGGGACTTCTCA
rJMFF010H09+          CTTTGCCTGTCGGTGTTCCTTGCTCTTGTTTATGCCAGAGGATTAACATGGGACTTCTCA
rJMFF043P03+          CTTTGCCTGTCGGTGTTCCTTGCTCTTGTTTATGCCAGAGGATTAACATGGGACTTCTCA
                      ____________________________________________________________
consensus             CTTTGCCTGTCGGTGTTCCTTGCTCTTGTTTATGCCAGAGGATTAACATGGGACTTCTCA
 
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JMFN004K22-           TCGGAAGTGCTGGTCATTCTTATAGTCTGCATTGTGATGGGCGTCTTTGGGAGCATGCGT
rJMSF034L20+          TCGGAAGTGCTGGTCATTCTTATAGTCTGCATTGTGATGGGCGTCTTTGGGAGCATGCGT
rJMSF038K18+          TCGGAAGTGCTGGTCATTCTTATAGTCTGCATTGTGATGGGCGTCTTTGGGAGCATGCGT
rJMFF011N05+          TCGGAAGTGCTGGTCATTCTTATAGTCTGCATTGTGATGGGCGTCTTTGGGAGCATGCGT
rJMSF036M17+          TCGGAAGTGCTTGTCATTCTTATAGTCTGCATTGTGATGGGCGTCTTTGGGAGCATGCGT
rJMFF010B23+          TCGGAAGTGCTGGTCATTCTTATAGTCTGCATTGTGATGGGCGTCTTTGGGAGCATGCGT
rJMFF008P14+          TCGGAAGTGCTGGTCATTCTTATAGTCTGCATTGTGATGGGCGTCTTTGGGAGCATGCGT
rJMFF010H09+          TCGGAAGTGCTGGTCATTCTTATAGTCTGCATTGTGATGGGCGTCTTTGGGAGCATGCGT
rJMFF043P03+          TCGGAAGTGCTGGTCATTCTTATAGTCTGCATTGTGATGGGCGTCTTTGGGAGCATGCGT
rJMFF048G07+                 TGCTGGTCATTCTTATAGTCTGCATTGTGATGGGCGTCTTTGGGAGCATGCGT
                      ____________________________________________________________
consensus             TCGGAAGTGCTGGTCATTCTTATAGTCTGCATTGTGATGGGCGTCTTTGGGAGCATGCGT
 
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JMFN004K22-           TCTACATTCCCGCTCTGGACTTCCTTCATAGCATTTTCGCTCTACCCCTTATCCATCGCG
rJMSF034L20+          TCTACATTCCCGCTCTGGACTTCCTTCATAGCATTTTCGCTCTACCCCTTATCCATCGCG
rJMSF038K18+          TCTACATTCCCGCTCTGGACTTCCTTCATAGCATTTTCGCTCTACCCCTTATCCATCGCG
rJMFF011N05+          TCTACATTCCCGCTCTGGACTTCCTTCATAGCATTTTCGCTCTACCCCTTATCCATCGCG
rJMSF036M17+          TCTACATTCCCGCTCTGGACTTCCTTCATAGCATTTTCGCTCTACCCCTTATCCATCGCG
rJMFF010B23+          TCTACATTCCCGCTCTGGACTTCCTTCATAGCATTTTCGCTCTACCCCTTATCCATCGCG
rJMFF008P14+          TCTACATTCCCGCTCTGGACTTCCTTCATAGCATTTTCGCTCTACCCCTTATCCATCGCG
rJMFF010H09+          TCTACATTCCCGCTCTGGACTTCCTTCATAGCATTTTCGCTCTACCCCTTATCCATCGCG
rJMFF043P03+          TCTACATTCCCGCTCTGGACTTCCTTCATAGCATTTTCGCTCTACCCCTTATCCATCGCG
rJMFF048G07+          TCTACATTCCCGCTCTGGACTTCCTTCATAGCATTTTCGCTCTACCCCTTATCCATCGCG
                      ____________________________________________________________
consensus             TCTACATTCCCGCTCTGGACTTCCTTCATAGCATTTTCGCTCTACCCCTTATCCATCGCG
 
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JMFN004K22-           CTTGTTTACGTGCTCGACTATGTATTTGGTTGGTCATAGGTTTGGTCTTTTTTCCTCCA-
rJMSF034L20+          CTTGTTTACGTGCTCGACTATGTATTTGGTTGGTCATAGGTTTGGTCTTTTTTCCTCCA-
rJMSF038K18+          CTTGTTTACGTGCTCGACTATGTATTTGGTTGGTCATAGGTTTGGTCTTTTTTCCTCCAN
rJMFF011N05+          CTTGTTTACGTGCTCGACTATGTATTTGGTTGGTCATAGGTTTGGTCTTTTTTCCTCCA-
rJMSF036M17+          CTTGTTTACGTGCTCGACTATGTATTTGGTTGGTCATAGGTTTGGTCTTTTTTCCTCCA-
rJMFF010B23+          CTTGTTTACGTGCTCGACTATGTATTTGGTTGGTCATAGGTTTGGTCTTTTTTCCTCCA-
rJMFF008P14+          CTTGTTTACGTGCTCGACTATGTATTTGGTTGGTCATAGGTTTGGTCTTTTTTCCTCCA-
rJMFF010H09+          CTTGTTTACGTGCTCGACTATGTATTTGGTTGGTCATAGGTTTGGTCTTTTTTCCTCCA-
rJMFF043P03+          CTTGTTTACGTGCTCGACTATGTATTTGGTTGGTCATAGGTTTGGTCTTTTTTCCTCCA-
rJMFF048G07+          CTTGTTTACGTGCTCGACTATGTATTTGGTTGGTCATAGGTTTGGTCTTTTTTCCTCCA-
                      ____________________________________________________________
consensus             CTTGTTTACGTGCTCGACTATGTATTTGGTTGGTCATAGGTTTGGTCTTTTTTCCTCCA-
 
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JMFN004K22-           GCAGTGTGTGTATTGAGTTAGCCTGCACATTTTGGTTACTTTGAGTTGTCACAGAAACAT
rJMSF034L20+          GCAGTGTGTGTATTGAGTTAGCCTGCACATTTTGGTTACTTTGAGTTGTCACAGAAACAT
rJMSF038K18+          GCAGTGTGTGTATTGAGTTAGCCTGCACATTTTGGTTACTTTGAGTTGTCACAGAAACAT
rJMFF011N05+          GCAGTGTGTGTATTGAGTTAGCCTGCACATTTTGGTTACTTTGAGTTGTCACAGAAACAT
rJMSF036M17+          GCAGTGTGTGTATTGAGTTAGCCTGCACATTTTGGTTACTTTGAGTTGTCACAGAAACAT
rJMFF010B23+          GCAGTGTGTGTATTGAGTTAGCCTGCACATTTTGGTTACTTTGAGTTGTCACAGAAACAT
rJMFF008P14+          GCAGTGTGTGTATTGAGTTAGCCTGCACATTTTGGTTACTTTGAGTTGTCACAGAAACAT
rJMFF010H09+          GCAGTGTGTGTATTGAGTTAGCCTGCACATTTTGGTTACTTTGAGTTGTCACAGAAACAT
rJMFF043P03+          GCAGTGTGTGTATTGAGTTAGCCTGCACATTTTGGTTACTTTGAGTTGTCACAGAAACAT
rJMFF048G07+          GCAGTGTGTGTATTGAGTTAGCCTGCACATTTTGGTTACTTTGAGTTGTCACAGAAACAT
                      ____________________________________________________________
consensus             GCAGTGTGTGTATTGAGTTAGCCTGCACATTTTGGTTACTTTGAGTTGTCACAGAAACAT
 
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JMFN004K22-           TGTGTTGGCTAAGGTTCCTTGTTCTACATGTGAGAAGTGTTTGCTCATGCTTGC      
rJMSF034L20+          TGTGTTGGCTAAGGTTCCTTGTTCTACATGTGAGAAGTGTTTGCTCATGCTTGCAAACAC
rJMSF038K18+          TGTGTTGGCTAAGGTTCCTTGTTCTACATGTGAGAAGTGTTTGCTCATGCTTGCAAACAC
rJMFF011N05+          TGTGTTGGCTAAGGTTCCTTGTTCTACATGTGAGAAGTGTTTGCTCATGCTTGCAAACAC
rJMSF036M17+          TGTGTTGGCTAAGGTTCCTTGTTCTACATGTGAGAAGTGTTTGCTCATGCTTGCAAACAC
rJMFF010B23+          TGTGTTGGCTAAGGTTCCTTGTTCTACATGTGAGAAGTGTTTGCTCATGCTTGCAAACAC
rJMFF008P14+          TGTGTTGGCTAAGGTTCCTTGTTCTACATGTGAGAAGTGTTTGCTCATGCTTGCAAACAC
rJMFF010H09+          TGTGTTGGCTAAGGTTCCTTGTTCTACATGTGAGAAGTGTTTGCTCATGCTTGCAAACAC
rJMFF043P03+          TGTGTTGGCTAAGGTTCCTTGTTCTACATGTGAGAAGTGTTTGCTCATGCTTGCAAACAC
rJMFF048G07+          TGTGTTGGCTAAGGTTCCTTGTTCTACATGTGAGAAGTGTTTGCTCATGCTTGCAAACAC
                      ____________________________________________________________
consensus             TGTGTTGGCTAAGGTTCCTTGTTCTACATGTGAGAAGTGTTTGCTCATGCTTGCAAACAC
 
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rJMSF034L20+          TCTTTG                                                      
rJMSF038K18+          TCTTTGTGTTTCTAT                                             
rJMFF011N05+          TCTTTGTGTTTCTATGTGGTCAGAACACTCA                             
rJMSF036M17+          TCTTTG                                                      
rJMFF010B23+          TCTTTGTGTTTCTATGTGGTCAGAACACTCA                             
rJMFF008P14+          TCTTTGTGTTTCTATGTGGTCAGAACACTCATG                           
rJMFF010H09+          TCTTTGTGTTTCTATGTGGTCAGAACACTCATG                           
rJMFF043P03+          TCTTTGTGTTTCTATGTGGTCAGAACACTCATGTCTATGTTATATCATTTATCTTGCTCC
rJMFF048G07+          TCTTTGTGTTTCTATGTGGTCAGAACACTCATGTCTATGTTATATCATTTATCTTGCTCC
                      ____________________________________________________________
consensus             TCTTTGTGTTTCTATGTGGTCAGAACACTCATGTCTATGTTATATCATTTATCTTGCTCC