| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF010C01 | Sequence | 101 | 009487 (3) | 802 | 005547 (7) | ref|NP_001234281.1| | 8e-120 | vacuolar H+-ATPase A1 subunit isoform [Solanum lycopersicum] gb|AAO23980.1| vacu | |||
| JMFF012E10 | Sequence | 807 | 005547 (7) | ref|NP_001234281.1| | 2e-122 | vacuolar H+-ATPase A1 subunit isoform [Solanum lycopersicum] gb|AAO23980.1| vacu | |||||
| JMFF020E12 | Sequence | 115 | 009487 (3) | 721 | 005547 (7) | ref|NP_001234281.1| | 6e-100 | vacuolar H+-ATPase A1 subunit isoform [Solanum lycopersicum] gb|AAO23980.1| vacu | |||
| JMFF048D09 | Sequence | 335 | 017407 | ref|NP_001234287.1| | 2e-10 | vacuolar H+-ATPase A2 subunit isoform [Solanum lycopersicum] gb|AAO23981.1| vacu | 385 | 005547 (7) | sp|Q39291.1|VATA_BRANA | 2e-14 | RecName: Full=V-type proton ATPase catalytic subunit A; Short=V-ATPase subunit |
| JMSF001D16 | Sequence | 223 | 004904 (2) | emb|CDO97735.1| | 1e-39 | unnamed protein product [Coffea canephora] | 700 | 005547 (7) | ref|NP_001234281.1| | 6e-101 | vacuolar H+-ATPase A1 subunit isoform [Solanum lycopersicum] gb|AAO23980.1| vacu |
| JMSF040E10 | Sequence | 638 | 004904 (2) | gb|AAA79992.1| | 6e-149 | V-ATPase 66 kDa subunit, partial [Acer pseudoplatanus] | 892 | 005547 (7) | ref|NP_001234281.1| | 1e-140 | vacuolar H+-ATPase A1 subunit isoform [Solanum lycopersicum] gb|AAO23980.1| vacu |
| JMSF041B16 | Sequence | 141 | 009487 (3) | 659 | 005547 (7) | dbj|BAA89598.1| | 4e-89 | vacuolar H+-ATPase A subunit [Citrus unshiu] | |||
This contig is upended
. : . : . : . : . : . :
rJMSF040E10+ AAAGAACTGGGAGTGTCACCATTGTTGGGTGC
____________________________________________________________
consensus AAAGAACTGGGAGTGTCACCATTGTTGGGTGC
. : . : . : . : . : . :
rJMSF040E10+ TGTTTCACCCCCTGGAGGGAGATTTTTCAGACCCTGTTACATCTGCAACCCTTGGTATTG
____________________________________________________________
consensus TGTTTCACCCCCTGGAGGGAGATTTTTCAGACCCTGTTACATCTGCAACCCTTGGTATTG
. : . : . : . : . : . :
rJMSF040E10+ TTCAGGTTTTCTGGGGTCTGGACAAGAAATTGGCACAAAGGAAGCATTTTCCTTCAGTAA
rJMFF012E10+ GACAAGAAATTGNCACAAAGGAAGCATTTTCNTTCAGTAA
rJMFF010C01+ AAGGAAGCATTTTCCTTCAGTAA
____________________________________________________________
consensus TTCAGGTTTTCTGGGGTCTGGACAAGAAATTGGCACAAAGGAAGCATTTTCCTTCAGTAA
. : . : . : . : . : . :
rJMSF040E10+ ATTGGCTGATTTCTTACTCAAAATATTCAGGGGCATTGGAGTCCTTTTATGAGAAGTTTG
rJMFF012E10+ ATTGGCTGATTTCTTACTCAAAATATTCAGGGGCATTGGAGTCCTTTTATGAGAAGTTTG
rJMFF020E12+ TGAGAAGTTTG
rJMSF001D16+ TTATGAGAAGTTTG
rJMFF010C01+ ATTGGCTGATTTCTTACTCAAAATATTCAGGGGCATTGGAGTCCTTTTATGAGAAGTTTG
____________________________________________________________
consensus ATTGGCTGATTTCTTACTCAAAATATTCAGGGGCATTGGAGTCCTTTTATGAGAAGTTTG
. : . : . : . : . : . :
rJMSF040E10+ ATCCTGATTTCATCAGTATACGAACAAAAGCTCGTGAGGTACTGCAGAGGGAAGATGACC
rJMFF012E10+ ATCCTGATTTCATCAGTATACGAACAAAAGCTCGTGAGGTACTGCAGAGGGAAGATGACC
rJMSF041B16+ TCGTGAGGTACTGCAGAGGGAAGATGACC
rJMFF020E12+ ATCCTGATTTCATCAGTATACGAACAAAAGCTCGTGAGGTACTGCAGAGGGAAGATGACC
rJMSF001D16+ ATCCTGATTTCATCAGTATACGAACAAAAGCTCGTGAGGTACTGCAGAGGGAAGATGACC
rJMFF010C01+ ATCCTGATTTCATCAGTATACGAACAAAAGCTCGTGAGGTACTGCAGAGGGAAGATGACC
____________________________________________________________
consensus ATCCTGATTTCATCAGTATACGAACAAAAGCTCGTGAGGTACTGCAGAGGGAAGATGACC
. : . : . : . : . : . :
rJMSF040E10+ TGAATGAAATTGTGCAGCTTGTTGGAAAGGATGCTTTAGCCGAGTCAGATAAAATTACCC
rJMFF012E10+ TGAATGAAATTGTGCAGCTTGTTGGAAAGGATGCTTTAGCCGAGTCAGATAAAATTACCC
rJMSF041B16+ TGAATGAAANTGTGCAGCTTGTTGGAAAGGATGCTTTAGCCGAGTCAGATAAAATTACCC
rJMFF020E12+ TGAATGAAATTGTGCAGCTTGTTGGAAAGGATGCTTTAGCCGAGTCAGATAAAATTACCC
rJMSF001D16+ TGAATGAAATTGTGCAGCTTGTTGGAAAGGATGCTTTAGCCGAGTCAGATAAAATTACCC
rJMFF010C01+ TGAATGAAATTGTGCAGCTTGTTGGAAAGGATGCTTTAGCCGAGTCAGATAAAATTACCC
____________________________________________________________
consensus TGAATGAAATTGTGCAGCTTGTTGGAAAGGATGCTTTAGCCGAGTCAGATAAAATTACCC
. : . : . : . : . : . :
rJMSF040E10+ TGGAAACTGCTAAACTTTTGAGAGAGGACTACCTTGCACAAAATGCTTTTACACCATATG
rJMFF012E10+ TGGAAACTGCTAAACTTTTGAGAGAGGACTACCTTGCACAAAATGCTTTTACACCATATG
rJMSF041B16+ TGGAAACTGCTAAACTTTTGAGAGAGGACTACCTTGCACAAAATGCTTTTACACCATATG
rJMFF020E12+ TGGAAACTGCTAAACTTTTGAGAGAGGACTACCTTGCACAAAATGCTTTTACACCATATG
rJMSF001D16+ TGGAAACTGCTAAACTTTTGAGAGAGGACTACCTTGCACAAAATGCTTTTACACCATATG
rJMFF010C01+ TGGAAACTGCTAAACTTTTGAGAGAGGACTACCTTGCACAAAATGCTTTTACACCATATG
____________________________________________________________
consensus TGGAAACTGCTAAACTTTTGAGAGAGGACTACCTTGCACAAAATGCTTTTACACCATATG
. : . : . : . : . : . :
rJMSF040E10+ ACAAATTCTGCCCATTCTACAAGTCTGTTTGGATGCTGCGGAACATCATCCATTTTTACA
rJMFF012E10+ ACAAATTCTGCCCATTCTACAAGTCTGTTTGGATGCTGCGGAACATCATCCATTTTTACA
rJMSF041B16+ ACAAATTCTGCCCATTCTACAAGTCTGTTTGGATGCTGCGGAACATCATCCATTTTTACA
rJMFF020E12+ ACAAATTCTGCCCATTCTACAAGTCTGTTTGGATGCTGCGGAACATCATCCATTTTTACA
rJMSF001D16+ ACAAATTCTGCCCATTCTACAAGTCTGTTTGGATGCTGCGGAACATCATCCATTTTTACA
rJMFF010C01+ ACAAATTCTGCCCATTCTACAAGTCTGTTTGGATGCTGCGGAACATCATCCATTTTTACA
____________________________________________________________
consensus ACAAATTCTGCCCATTCTACAAGTCTGTTTGGATGCTGCGGAACATCATCCATTTTTACA
. : . : . : . : . : . :
rJMSF040E10+ ACTTGGCCAATCAGGCTGTTGAACGAGGAGCTGGTATGGATGGTCAGAAGATTACTTACA
rJMFF012E10+ ACTTGGCCAATCAGGCTGTTGAACGAGGAGCTGGTATGGATGGTCAGAAGATTACTTACA
rJMSF041B16+ ACTTGGCCAATCAGGCTGTTGAACGAGGAGCTGGTATGGATGGTCAGAAGATTACTTACA
rJMFF020E12+ ACTTGGCCAATCAGGCTGTTGAACGAGGAGCTGGTATGGATGGTCAGAAGATTACTTACA
rJMSF001D16+ ACTTGGCCAATCAGGCTGTTGAACGAGGAGCTGGTATGGATGGTCAGAAGATTACTTACA
rJMFF010C01+ ACTTGGCCAATCAGGCTGTTGAACGAGGAGCTGGTATGGATGGTCAGAAGATTACTTACA
____________________________________________________________
consensus ACTTGGCCAATCAGGCTGTTGAACGAGGAGCTGGTATGGATGGTCAGAAGATTACTTACA
. : . : . : . : . : . :
rJMSF040E10+ GTTTGATTAAGCACCGCCTGGGAGATCTGTTTTACCGTTTGGTGTCTCAGAAATTTGAGG
rJMFF012E10+ GTTTGATTAAGCACCGCCTGGGAGATCTGTTTTACCGTTTGGTGTCTCAGAAATTTGAGG
rJMSF041B16+ GTTTGATTAAGCACCGCCTGGGAGATCTGTTTTACCGTTTGGTGTCTCAGAAATTTGAGG
rJMFF020E12+ GTTTGATTAAGCACCGCCTGGGAGATCTGTTTTACCGTTTGGTGTCTCAGAAATTTGAGG
rJMSF001D16+ GTTTGATTAAGCACCGCCTGGGAGATCTGTTTTACCGTTTGGTGTCTCAGAAATTTGAGG
rJMFF010C01+ GTTTGATTAAGCACCGCCTGGGAGATCTGTTTTACCGTTTGGTGTCTCAGAAATTTGAGG
rJMFF048D09+ CGTTTGGTGTCTCAGAAATGTGAGG
____________________________________________________________
consensus GTTTGATTAAGCACCGCCTGGGAGATCTGTTTTACCGTTTGGTGTCTCAGAAATTTGAGG
. : . : . : . : . : . :
rJMSF040E10+ ATCCTGCTGAAGGAGAAGACGTCTTGGTAGGCAAGTTCAAAAAGCTTCACGAGGATTTGA
rJMFF012E10+ ATCCTGCTGAAGGAGAAGACGTCTTGGTAGGCAAGTTCAAAAAGCTTCACGAGGATTTGA
rJMSF041B16+ ATCCTGCTGAAGGAGAAGACGCCTTGGTAGGCAAGTTCAAAAAGCTTCACGAGGATTTGA
rJMFF020E12+ ATCCTGCTGAAGGAGAAGACGTCTTGGTAGGCAAGTTCAAAAAGCTTCACGAGGATTTGA
rJMSF001D16+ ATCCTGCTGAAGGAGAAGACGTCTTGGTAGGCAAGTTCAAAAAGCTTCACGAGGATTTGA
rJMFF010C01+ ATCCTGCTGAAGGAGAAGACGTCTTGGTAGGCAAGTTCAAAAAGCTTCACGAGGATTTGA
rJMFF048D09+ ATCCTGCTGAAGGAGAAGACGTCTTGGTAGGCAAGTTCAAAAAGCTTCACGAGGATTTGA
____________________________________________________________
consensus ATCCTGCTGAAGGAGAAGACGTCTTGGTAGGCAAGTTCAAAAAGCTTCACGAGGATTTGA
. : . : . : . : . : . :
rJMSF040E10+ TTTCTGGATTCCGCAACCTTGAAGATGAAACTCGATGATCAGTGTTTGAGCATCAAATCT
rJMFF012E10+ TTTCTGGATTCCGCAACCTTGAAGATGAAACTCGATGATCAGTGTTTGAGCATCAAATCT
rJMSF041B16+ TTTCTGGATTCCGCAACCTTGAAGATGAAACTCGATGATCAGTGTTTGAGCATCAAATCT
rJMFF020E12+ TTTCTGGATTCCGCAACCTTGAAGATGAAACTCGATGATCAGTGTTTGAGCATCAAATCT
rJMSF001D16+ TTTCTGGATTCCGCAACCTTGAAGATGAAACTCGATGATCAGTGTTTGAGCATCAAATCT
rJMFF010C01+ TTTCTGGATTCCGCAACCTTGAAGATGAAACTCGATGATCAGTGTTTGAGCATCAAATCT
rJMFF048D09+ TTTCTGGATTCCGCAACCTTGAAGATGAAACTCGATGATCAGTGTTTGAGCATCAAATCT
____________________________________________________________
consensus TTTCTGGATTCCGCAACCTTGAAGATGAAACTCGATGATCAGTGTTTGAGCATCAAATCT
. : . : . : . : . : . :
rJMSF040E10+ TTGGAGACATTAGCTCTTCACTCTCAGTAAACAAGGTTTTGTATTGTATTTATTTGGTGT
rJMFF012E10+ TTGGAGACATTAGCTCTTCACTCTCAGTAAACAAGGTTTTGTATTGTATTTATTTGGTGT
rJMSF041B16+ TTGGAGACATTAGCTCTTCACTCTCAGTAAACAAGGTTTTGTATTGTATTTATTTGGTGT
rJMFF020E12+ TTGGAGACATTAGCTCTTCACTCTCAGTAAACAAGGTTTTGTATTGTATTTATTTGGTGT
rJMSF001D16+ TTGGAGACATTAGCTCTTCACTCTCAGTAAACAAGGTTTTGTATTGTATTTATTTGGTGT
rJMFF010C01+ TTGGAGACATTAGCTCTTCACTCTCAGTAAACAAGGTTTTGTATTGTATTTATTTGGTGT
rJMFF048D09+ TTGGAGACATTAGCTCTTCACTCTCAGTAAACAAGGTTTTGTATTGTATTTATTTGGTGT
____________________________________________________________
consensus TTGGAGACATTAGCTCTTCACTCTCAGTAAACAAGGTTTTGTATTGTATTTATTTGGTGT
. : . : . : . : . : . :
rJMSF040E10+ GATGAGTCAATCATGTTCGACATCACGATGCATATTTAGTTTTATAATCCAGGGGAGAAG
rJMFF012E10+ GATGAGTCAATCATGTTCGACATCACGATGCATATTTAGTTTTATAATCCAGGGGAGAAG
rJMSF041B16+ GATGAGTCAATCATGTTCGACATCACGATGCATATTTAGTTTTATAATCCAGGGGAGAAG
rJMFF020E12+ GATGAGTCAATCATGTTCGACATCACGATGCATATTTAGTTTTATAATCCAGGGGAGAAG
rJMSF001D16+ GATGAGTCAATCATGTTCGACATCACGATGCATATTTAGTTTTATAATCCAGGGGAGAAG
rJMFF010C01+ GATGAGTCAATCATGTTCGACATCACGATGCATATTTAGTTTTATAATCCAGGGGAGAAG
rJMFF048D09+ GATGAGTCAATCATGTTCGACATCACGATGCATATTTAGTTTTATAATCCAGGGGAGAAG
____________________________________________________________
consensus GATGAGTCAATCATGTTCGACATCACGATGCATATTTAGTTTTATAATCCAGGGGAGAAG
. : . : . : . : . : . :
rJMSF040E10+ TGAGAAATAAAAGGAACTAAGTAATGGTTGTATGGGCATTGCATTATGTAGCTTGTCGAA
rJMFF012E10+ TGAGAAATAAAAGGAACTAAGTAATGGTTGTATGGGCATTGCATTATGTAGCTTGTCGAA
rJMSF041B16+ TGAGAAATAAAAGGAACTAAGTAATGGTTGTATGGGCATTGCATTATGTAGCTTGTCGAA
rJMFF020E12+ TGAGAAATAAAAGGAACTAAGTAATGGTTGTATGGGCATTGCATTATGTAGCTTGTCGAA
rJMSF001D16+ TGAGAAATAAAAGGAACTAAGTAATGGTTGTATGGGCATTGCATTATGTAGCTTGTCGAA
rJMFF010C01+ TGAGAAATAAAAGGAACTAAGTAATGGTTGTATGGGCATTGCATTATGTAGCTTGTCGAA
rJMFF048D09+ TGAGAAATAAAAGGAACTAAGTAATGGTTGTATGGGCATTGCATTATGTAGCTTGTCGAA
____________________________________________________________
consensus TGAGAAATAAAAGGAACTAAGTAATGGTTGTATGGGCATTGCATTATGTAGCTTGTCGAA
. : . : . : . : . : . :
rJMSF040E10+ TAATTTTTGTTTTCTGCATT
rJMFF012E10+ TAATTTTTGTTTTCTGCATTTGTTTGTTCTCTANCATAATAAAGAAT
rJMSF041B16+ TAATTTTTGTTTTCTGCATT
rJMFF020E12+ TAATTTTTGTTTTCTGCATTTGTTTGTTCTCTATCATAATAAAGAAT
rJMSF001D16+ TAATTTTTGTTTTCTGCATT
rJMFF010C01+ TAATTTTTGTTTTCTGCATTTGTTTGTTCTCTATCATAATAAAGAATCAGGC
rJMFF048D09+ TAATTTTTGTTTTCTGCATTTGTTTGTTCTCTATCATAATAAAGAATCAGGCTGCAATTC
____________________________________________________________
consensus TAATTTTTGTTTTCTGCATTTGTTTGTTCTCTATCATAATAAAGAATCAGGCTGCAATTC