Contig 005546:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF048C12Sequence390003716 (3)ref|XP_006399265.1|1e-10hypothetical protein EUTSA_v10013186mg [Eutrema salsugineum] gb|ESQ40718.1| hypo243005546 (3)
JMSF028N04Sequence647003716 (3)ref|XP_006399265.1|4e-13hypothetical protein EUTSA_v10013186mg [Eutrema salsugineum] gb|ESQ40718.1| hypo704005546 (3)gb|AGV40186.2|6e-94heparanase 1-like protein [Nicotiana tabacum]
JMSF035M12Sequence632003716 (3)gb|KJB50981.1|2e-68hypothetical protein B456_008G196400 [Gossypium raimondii]763005546 (3)gb|AGV40186.2|1e-107heparanase 1-like protein [Nicotiana tabacum]

Alignment

This contig is upended


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rJMSF035M12+                                  TGGTATGTAGATCAGCTTGGGATGGCGGCCAAGTAC
                      ____________________________________________________________
consensus                                     TGGTATGTAGATCAGCTTGGGATGGCGGCCAAGTAC
 
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rJMSF028N04+                             GGCAGACATTAATCGGTGGAAACTATGGGCTCCTTGACACA
rJMSF035M12+          NAGACAAAAGTTTATTGCAGGCAGACATTAATCGGTGGAAACTATGGGCTCCTTGACACA
                      ____________________________________________________________
consensus             NAGACAAAAGTTTATTGCAGGCAGACATTAATCGGTGGAAACTATGGGCTCCTTGACACA
 
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rJMSF028N04+          AACACGTTTATCCCGAATCCTGATTATTACAGTGCACTTCTATGGCATCGTCTTATGGGA
rJMSF035M12+          AACACGTTTATCCCGAATCCTGATTATTACAGTGCACTTCTATGGCATCGTCTTATGGGA
                      ____________________________________________________________
consensus             AACACGTTTATCCCGAATCCTGATTATTACAGTGCACTTCTATGGCATCGTCTTATGGGA
 
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rJMSF028N04+          AGAGGAGTGCTTGATGTTAACAGCAATGGATCGCCATATTTACGTTCTTATGCTCACTGC
rJMSF035M12+          AGAGGAGTGCTTGATGTTAACAGCAATGGATCGCCATATTTACGTTCTTATGCTCACTGC
                      ____________________________________________________________
consensus             AGAGGAGTGCTTGATGTTAACAGCAATGGATCGCCATATTTACGTTCTTATGCTCACTGC
 
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rJMSF028N04+          ACAAAAGAAAGAGCGGGTGTCACGCTGCTTCTAATAAACCTAAGCAACCAAACAGAGTTC
rJMSF035M12+          ACAAAAGAAAGAGCGGGTGTCACGCTGCTTCTAATAAACCTAAGCAACCAAACAGAGTTC
                      ____________________________________________________________
consensus             ACAAAAGAAAGAGCGGGTGTCACGCTGCTTCTAATAAACCTAAGCAACCAAACAGAGTTC
 
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rJMSF028N04+          AGCGTTGGCGTTAAATCCACTACAAGCATCAGCTTGCATGCCAGTGTGAAACCACATCAC
rJMSF035M12+          AGCGTTGGCGTTAAATCCACTACAAGCATCAGCTTGCATGCCAGTGTGAAACCACATCAC
                      ____________________________________________________________
consensus             AGCGTTGGCGTTAAATCCACTACAAGCATCAGCTTGCATGCCAGTGTGAAACCACATCAC
 
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rJMSF028N04+          AAGAAAAGGTCGTTCCTGCACGGTCTAAAGCAAACGGTTTCATGGGTAGGAAGTAAGGCA
rJMSF035M12+          AAGAAAAGGTCGTTCCTGCACGGTCTAAAGCAAACGGTTTCATGGGTAGGAAGTAAGGCA
                      ____________________________________________________________
consensus             AAGAAAAGGTCGTTCCTGCACGGTCTAAAGCAAACGGTTTCATGGGTAGGAAGTAAGGCA
 
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rJMSF028N04+          TCGGACGCACCATTGTCACGAGAAGAATACCATCTAACTCCAGAAGACGGGAACCTTCAA
rJMSF035M12+          TCGGACGCACCATTGTCACGAGAAGAATACCATCTAACTCCAGAAGACGGGAACCTTCAA
                      ____________________________________________________________
consensus             TCGGACGCACCATTGTCACGAGAAGAATACCATCTAACTCCAGAAGACGGGAACCTTCAA
 
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rJMSF028N04+          AGCAGAAGTGCGCTCCTGAATGGAAGACCATTACAGCTTAGCGAAACTGGAGACATACCG
rJMSF035M12+          AGCAGAAGTGCGCTCCTGAATGGAAGACCATTACAGCTTAGCGAAACTGGAGACATACCG
                      ____________________________________________________________
consensus             AGCAGAAGTGCGCTCCTGAATGGAAGACCATTACAGCTTAGCGAAACTGGAGACATACCG
 
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rJMSF028N04+          AGTTTCTCACCAGTCCTCCAAGATGTAAGCTCTCCCGTTTCTATTGCCCCCTTGTCCATC
rJMSF035M12+          AGTTTCTCACCAGTCCTCCAAGATGTAAGCTCTCCCGTTTCTATTGCCCCCTTGTCCATC
rJMFF048C12+                                                                   ATC
                      ____________________________________________________________
consensus             AGTTTCTCACCAGTCCTCCAAGATGTAAGCTCTCCCGTTTCTATTGCCCCCTTGTCCATC
 
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rJMSF028N04+          AAATTCATTGTATTTCCTAACTTCATTGCTCCAGGTTGCCAGGAGGTTTGACATATATTC
rJMSF035M12+          AAATTCATTGTATTTCCTAACTTCATTGCTCCAGGTTGCCAGGAGGTTTGACATATATTC
rJMFF048C12+          AAATTCATGGTATTTCCTAACTTCATTGCTCCAGGTTGCCAGGAGGTTTGACATATATTC
                      ____________________________________________________________
consensus             AAATTCATTGTATTTCCTAACTTCATTGCTCCAGGTTGCCAGGAGGTTTGACATATATTC
 
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rJMSF028N04+          TAAGATTCTGAAACGCTTACTAATGTTTTACTTACATGCATTCTGGCATTCTGCAAATGT
rJMSF035M12+          TAAGATTCTGAAACGCTTACTAATGTTTTACTTACATGCATTCTGGCATTCTGCAAATGT
rJMFF048C12+          TAAGATTCTGAAACGCTTACTAATGTTTTACTTACATGCATTCTGGCATTCTGCAAATGT
                      ____________________________________________________________
consensus             TAAGATTCTGAAACGCTTACTAATGTTTTACTTACATGCATTCTGGCATTCTGCAAATGT
 
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rJMSF028N04+          ATTATAGCTTAGCATAGCACCATGTATCACTAGCATCTGTTGCAAATTT           
rJMSF035M12+          ATTATAGCTTAGCATAGCACCATGTATCACTAGCATCTGTTGCAAATTT           
rJMFF048C12+          ATTATAGCTTAGCATAGCACCATGTATCACTAGCATCTGTTGCAAATTTTCTTTCCACTT
                      ____________________________________________________________
consensus             ATTATAGCTTAGCATAGCACCATGTATCACTAGCATCTGTTGCAAATTTTCTTTCCACTT
 
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rJMFF048C12+          TGGCATATACCTTCAATATGAATAAATGTTCCAAAATCAATACATTTTTTTCCTTCCACG
                      ____________________________________________________________
consensus             TGGCATATACCTTCAATATGAATAAATGTTCCAAAATCAATACATTTTTTTCCTTCCACG