Contig 005546:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF048C12Sequence390003716 (3)ref|XP_006399265.1|1e-10hypothetical protein EUTSA_v10013186mg [Eutrema salsugineum] gb|ESQ40718.1| hypo243005546 (3)
JMSF028N04Sequence647003716 (3)ref|XP_006399265.1|4e-13hypothetical protein EUTSA_v10013186mg [Eutrema salsugineum] gb|ESQ40718.1| hypo704005546 (3)gb|AGV40186.2|6e-94heparanase 1-like protein [Nicotiana tabacum]
JMSF035M12Sequence632003716 (3)gb|KJB50981.1|2e-68hypothetical protein B456_008G196400 [Gossypium raimondii]763005546 (3)gb|AGV40186.2|1e-107heparanase 1-like protein [Nicotiana tabacum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF035M12+ TGGTATGTAGATCAGCTTGGGATGGCGGCCAAGTAC
                      ____________________________________________________________
consensus TGGTATGTAGATCAGCTTGGGATGGCGGCCAAGTAC
 
. : . : . : . : . : . :
rJMSF028N04+ GGCAGACATTAATCGGTGGAAACTATGGGCTCCTTGACACA
rJMSF035M12+ NAGACAAAAGTTTATTGCAGGCAGACATTAATCGGTGGAAACTATGGGCTCCTTGACACA
                      ____________________________________________________________
consensus NAGACAAAAGTTTATTGCAGGCAGACATTAATCGGTGGAAACTATGGGCTCCTTGACACA
 
. : . : . : . : . : . :
rJMSF028N04+ AACACGTTTATCCCGAATCCTGATTATTACAGTGCACTTCTATGGCATCGTCTTATGGGA
rJMSF035M12+ AACACGTTTATCCCGAATCCTGATTATTACAGTGCACTTCTATGGCATCGTCTTATGGGA
                      ____________________________________________________________
consensus AACACGTTTATCCCGAATCCTGATTATTACAGTGCACTTCTATGGCATCGTCTTATGGGA
 
. : . : . : . : . : . :
rJMSF028N04+ AGAGGAGTGCTTGATGTTAACAGCAATGGATCGCCATATTTACGTTCTTATGCTCACTGC
rJMSF035M12+ AGAGGAGTGCTTGATGTTAACAGCAATGGATCGCCATATTTACGTTCTTATGCTCACTGC
                      ____________________________________________________________
consensus AGAGGAGTGCTTGATGTTAACAGCAATGGATCGCCATATTTACGTTCTTATGCTCACTGC
 
. : . : . : . : . : . :
rJMSF028N04+ ACAAAAGAAAGAGCGGGTGTCACGCTGCTTCTAATAAACCTAAGCAACCAAACAGAGTTC
rJMSF035M12+ ACAAAAGAAAGAGCGGGTGTCACGCTGCTTCTAATAAACCTAAGCAACCAAACAGAGTTC
                      ____________________________________________________________
consensus ACAAAAGAAAGAGCGGGTGTCACGCTGCTTCTAATAAACCTAAGCAACCAAACAGAGTTC
 
. : . : . : . : . : . :
rJMSF028N04+ AGCGTTGGCGTTAAATCCACTACAAGCATCAGCTTGCATGCCAGTGTGAAACCACATCAC
rJMSF035M12+ AGCGTTGGCGTTAAATCCACTACAAGCATCAGCTTGCATGCCAGTGTGAAACCACATCAC
                      ____________________________________________________________
consensus AGCGTTGGCGTTAAATCCACTACAAGCATCAGCTTGCATGCCAGTGTGAAACCACATCAC
 
. : . : . : . : . : . :
rJMSF028N04+ AAGAAAAGGTCGTTCCTGCACGGTCTAAAGCAAACGGTTTCATGGGTAGGAAGTAAGGCA
rJMSF035M12+ AAGAAAAGGTCGTTCCTGCACGGTCTAAAGCAAACGGTTTCATGGGTAGGAAGTAAGGCA
                      ____________________________________________________________
consensus AAGAAAAGGTCGTTCCTGCACGGTCTAAAGCAAACGGTTTCATGGGTAGGAAGTAAGGCA
 
. : . : . : . : . : . :
rJMSF028N04+ TCGGACGCACCATTGTCACGAGAAGAATACCATCTAACTCCAGAAGACGGGAACCTTCAA
rJMSF035M12+ TCGGACGCACCATTGTCACGAGAAGAATACCATCTAACTCCAGAAGACGGGAACCTTCAA
                      ____________________________________________________________
consensus TCGGACGCACCATTGTCACGAGAAGAATACCATCTAACTCCAGAAGACGGGAACCTTCAA
 
. : . : . : . : . : . :
rJMSF028N04+ AGCAGAAGTGCGCTCCTGAATGGAAGACCATTACAGCTTAGCGAAACTGGAGACATACCG
rJMSF035M12+ AGCAGAAGTGCGCTCCTGAATGGAAGACCATTACAGCTTAGCGAAACTGGAGACATACCG
                      ____________________________________________________________
consensus AGCAGAAGTGCGCTCCTGAATGGAAGACCATTACAGCTTAGCGAAACTGGAGACATACCG
 
. : . : . : . : . : . :
rJMSF028N04+ AGTTTCTCACCAGTCCTCCAAGATGTAAGCTCTCCCGTTTCTATTGCCCCCTTGTCCATC
rJMSF035M12+ AGTTTCTCACCAGTCCTCCAAGATGTAAGCTCTCCCGTTTCTATTGCCCCCTTGTCCATC
rJMFF048C12+ ATC
                      ____________________________________________________________
consensus AGTTTCTCACCAGTCCTCCAAGATGTAAGCTCTCCCGTTTCTATTGCCCCCTTGTCCATC
 
. : . : . : . : . : . :
rJMSF028N04+ AAATTCATTGTATTTCCTAACTTCATTGCTCCAGGTTGCCAGGAGGTTTGACATATATTC
rJMSF035M12+ AAATTCATTGTATTTCCTAACTTCATTGCTCCAGGTTGCCAGGAGGTTTGACATATATTC
rJMFF048C12+ AAATTCATGGTATTTCCTAACTTCATTGCTCCAGGTTGCCAGGAGGTTTGACATATATTC
                      ____________________________________________________________
consensus AAATTCATTGTATTTCCTAACTTCATTGCTCCAGGTTGCCAGGAGGTTTGACATATATTC
 
. : . : . : . : . : . :
rJMSF028N04+ TAAGATTCTGAAACGCTTACTAATGTTTTACTTACATGCATTCTGGCATTCTGCAAATGT
rJMSF035M12+ TAAGATTCTGAAACGCTTACTAATGTTTTACTTACATGCATTCTGGCATTCTGCAAATGT
rJMFF048C12+ TAAGATTCTGAAACGCTTACTAATGTTTTACTTACATGCATTCTGGCATTCTGCAAATGT
                      ____________________________________________________________
consensus TAAGATTCTGAAACGCTTACTAATGTTTTACTTACATGCATTCTGGCATTCTGCAAATGT
 
. : . : . : . : . : . :
rJMSF028N04+ ATTATAGCTTAGCATAGCACCATGTATCACTAGCATCTGTTGCAAATTT
rJMSF035M12+ ATTATAGCTTAGCATAGCACCATGTATCACTAGCATCTGTTGCAAATTT
rJMFF048C12+ ATTATAGCTTAGCATAGCACCATGTATCACTAGCATCTGTTGCAAATTTTCTTTCCACTT
                      ____________________________________________________________
consensus ATTATAGCTTAGCATAGCACCATGTATCACTAGCATCTGTTGCAAATTTTCTTTCCACTT
 
. : . : . : . : . : . :
rJMFF048C12+ TGGCATATACCTTCAATATGAATAAATGTTCCAAAATCAATACATTTTTTTCCTTCCACG
                      ____________________________________________________________
consensus TGGCATATACCTTCAATATGAATAAATGTTCCAAAATCAATACATTTTTTTCCTTCCACG