| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF011J15 | Sequence | 519 | 012848 (5) | ref|XP_009592052.1| | 2e-05 | PREDICTED: pyruvate kinase isozyme A, chloroplastic [Nicotiana tomentosiformis] | 695 | 005545 (5) | ref|XP_008353310.1| | 2e-125 | PREDICTED: LOW QUALITY PROTEIN: pyruvate kinase isozyme A, chloroplastic-like [ |
| JMFF045B21 | Sequence | 637 | 012848 (5) | ref|XP_009592052.1| | 2e-30 | PREDICTED: pyruvate kinase isozyme A, chloroplastic [Nicotiana tomentosiformis] | 621 | 005545 (5) | ref|XP_011091081.1| | 1e-102 | PREDICTED: pyruvate kinase isozyme A, chloroplastic [Sesamum indicum] |
| JMFF047J22 | Sequence | 558 | 012848 (5) | ref|XP_009592052.1| | 2e-34 | PREDICTED: pyruvate kinase isozyme A, chloroplastic [Nicotiana tomentosiformis] | 522 | 005545 (5) | ref|XP_011091081.1| | 3e-81 | PREDICTED: pyruvate kinase isozyme A, chloroplastic [Sesamum indicum] |
| JMFF048B03 | Sequence | 391 | 012848 (5) | ref|XP_006362155.1| | 1e-07 | PREDICTED: pyruvate kinase isozyme A, chloroplastic-like [Solanum tuberosum] | 253 | 005545 (5) | ref|XP_002311649.2| | 1e-20 | pyruvate phosphotransferase family protein [Populus trichocarpa] gb|EEE89016.2| |
| JMSF008D15 | Sequence | 242 | 012848 (5) | 774 | 005545 (5) | ref|XP_011091081.1| | 9e-148 | PREDICTED: pyruvate kinase isozyme A, chloroplastic [Sesamum indicum] | |||
This contig is upended
. : . : . : . : . : . :
rJMSF008D15+ GGCATCAGATGGAGCTATGGTGGCGAGAGGAGAT
____________________________________________________________
consensus GGCATCAGATGGAGCTATGGTGGCGAGAGGAGAT
. : . : . : . : . : . :
rJMSF008D15+ CTCGGTGCTCAGATCCCATTGGAACAGGTTCCGTTGCAACAGCAAAGGATTGTTCGGATT
____________________________________________________________
consensus CTCGGTGCTCAGATCCCATTGGAACAGGTTCCGTTGCAACAGCAAAGGATTGTTCGGATT
. : . : . : . : . : . :
rJMSF008D15+ TGCAGGCAGTTAAATAAGCCCGTTATCGTTGCTTCTCAGTTGCTCGATTCTATGATAGAA
rJMFF011J15+ CAGGCAGTTAAATAAGCCCGTTATCGTTGCTTCTCAGTTGCTCGATTCTATGATAGAA
____________________________________________________________
consensus TGCAGGCAGTTAAATAAGCCCGTTATCGTTGCTTCTCAGTTGCTCGATTCTATGATAGAA
. : . : . : . : . : . :
rJMSF008D15+ TACCCTATTCCTACGAGGGCCGAAGTGGCTGATGTTTCGGAAGCGGTTAGGCAAAGGGCG
rJMFF011J15+ TACCCTATTCCTACGAGGGCCGAAGTGGCTGATGTTTCGGAAGCGGTTAGGCAAAGGGCG
rJMFF045B21+ TCGGAAGCGGTTAGGCAAAGGGCG
____________________________________________________________
consensus TACCCTATTCCTACGAGGGCCGAAGTGGCTGATGTTTCGGAAGCGGTTAGGCAAAGGGCG
. : . : . : . : . : . :
rJMSF008D15+ GATGCCTTGATGCTCTCTGGCGAGTCGGCAATGGGCCAGTATCCCGACAAAGCATTGGCT
rJMFF011J15+ GATGCCTTGATGCTCTCTGGCGAGTCGGCAATGGGCCAGTATCCCGACAAAGCATTGGCT
rJMFF045B21+ GATGCCTTGATGCTCTCTGGCGAGTCGGCAATGGGCCAGTATCCCGACAAAGCATTGGCT
____________________________________________________________
consensus GATGCCTTGATGCTCTCTGGCGAGTCGGCAATGGGCCAGTATCCCGACAAAGCATTGGCT
. : . : . : . : . : . :
rJMSF008D15+ GTCGTAAGGACTGTTAGTTTGAGAATCGAGAGGCAGTGGAGAGAAAAGAAACAACACGAG
rJMFF011J15+ GTCGTAAGGACTGTTAGTTTGAGAATCGAGAGGCAGTGGAGAGAAAAGAAACAACACGAG
rJMFF045B21+ GTCGTAAGGACTGTTAGTNTGAGAATCGAGAGGCAGTGGAGAGAAAAGAAACAACACGAG
rJMFF047J22+ TGAGAATCGAGAGGCAGTGGAGAGAAAAGAAACAACACGAG
____________________________________________________________
consensus GTCGTAAGGACTGTTAGTTTGAGAATCGAGAGGCAGTGGAGAGAAAAGAAACAACACGAG
. : . : . : . : . : . :
rJMSF008D15+ GCCATAGAATTCCCGTCTATTGCATCTTCATTTGGAGATAGAATATCAGAAGAGATTTGC
rJMFF011J15+ GCCATAGAATTCCCGTCTATTGCATCTTCATTTGGAGATAGAATATCAGAAGAGATTTGC
rJMFF045B21+ GCCATAGAATTCCCGTCTATTGCATCTTCATTTGGAGATAGAATATCAGAAGAGATTTGC
rJMFF047J22+ GCCATAGAATTCCCGTCTATTGCATCTTCATTTGGAGATAGAATATCAGAAGAGATTTGC
____________________________________________________________
consensus GCCATAGAATTCCCGTCTATTGCATCTTCATTTGGAGATAGAATATCAGAAGAGATTTGC
. : . : . : . : . : . :
rJMSF008D15+ AATTCTGCTGCCAAGATGGCTAACCATTTGGAGGTCGATGCTATTTTTGTGTACACCAAG
rJMFF011J15+ AATTCTGCTGCCAAGATGGCTAACCATTTGGAGGTCGATGCTATTTTTGTGTACACCAAG
rJMFF045B21+ AATTCTGCTGCCAAGATGGCTAACCATTTGGAGGTCGATGCTATTTTTGTGTACACCAAG
rJMFF047J22+ AATTCTGCTGCCAAGATGGCTAACCATTTGGAGGTCGATGCTATTTTTGTGTACACCAAG
____________________________________________________________
consensus AATTCTGCTGCCAAGATGGCTAACCATTTGGAGGTCGATGCTATTTTTGTGTACACCAAG
. : . : . : . : . : . :
rJMSF008D15+ GATGGACACATGGCTTCTCTCCTATCACGCTGTCGTCCCGACTGCCCCATATTCGCGTTT
rJMFF011J15+ GATGGACACATGGCTTCTCTCCTATCACGCTGTCGTCCCGACTGCCCCATATTCGCGTTT
rJMFF045B21+ GATGGACACATGGCTTCTCTCCTATCACGCTGTCGTCCCGACTGCCCCATATTCGCGTTT
rJMFF047J22+ GATGGACACATGGCTTCTCTCCTATCACGCTGTCGTCCCGACTGCCCCATATTCGCGTTT
____________________________________________________________
consensus GATGGACACATGGCTTCTCTCCTATCACGCTGTCGTCCCGACTGCCCCATATTCGCGTTT
. : . : . : . : . : . :
rJMSF008D15+ ACAGACACAACGTCCACGCGTAGGCGCCTGAACCTGCAATGGGGTCTGATTCCCTTTCGC
rJMFF011J15+ ACAGACACAACGTCCACGCGTAGGCGCCTGAACCTGCAATGGGGTCTGATTCCCTTTCGC
rJMFF045B21+ ACAGACACAACGTCCACGCGTAGGCGCCTGAACCTGCAATGGGGTCTGATTCCCTTTCGC
rJMFF047J22+ ACAGACACAACGTCCACGCGTAGGCGCCTGAACCTGCAATGGGGTCTGATTCCCTTTCGC
rJMFF048B03+ GATTCCCTTTCGC
____________________________________________________________
consensus ACAGACACAACGTCCACGCGTAGGCGCCTGAACCTGCAATGGGGTCTGATTCCCTTTCGC
. : . : . : . : . : . :
rJMSF008D15+ GTGAATTTCTCCGACGATATGGAAACCAACCTGAACAAAACCTTTTCCCTGCTAAAGGCC
rJMFF011J15+ GTGAATTTCTCCGACGATATGGAAACCAACCTGAACAAAACCTTTTCCCTGCTAAAGGCC
rJMFF045B21+ GTGAATTTCTCCGACGATATGGAAACCAACCTGAACAAAACCTTTTCCCTGCTAAAGGCC
rJMFF047J22+ GTGAATTTCTCCGACGATATGGAAACCAACCTGAACAAAACCTTTTCCCTGCTAAAGGCC
rJMFF048B03+ GTGAATTTCTCCGACGATATGGAAACCAACCTGAACAAAACCTTTTCCCTGCTAAAGGCC
____________________________________________________________
consensus GTGAATTTCTCCGACGATATGGAAACCAACCTGAACAAAACCTTTTCCCTGCTAAAGGCC
. : . : . : . : . : . :
rJMSF008D15+ CGCGGCATGATAAAATCAGGTGATCTAGTTATCGCTGTATCTGACATGCTGCAATCTATT
rJMFF011J15+ CGCGGCATGATAAAATCAGGTGATCTAGTTATCGCTGTATCTGACNTGCTGCAATCTATT
rJMFF045B21+ CGCGGCATGATAAAATCAGGTGATCTAGTTATCGCTGTATCTGACATGCTGCAATCTATT
rJMFF047J22+ CGCGGCATGATAAAATCAGGTGATCTAGTTATCGCTGTATCTGACATGCTGCAATCTATT
rJMFF048B03+ CGCGGCATGATAAAATCAGGTGATCTAGTTATCGCTGTATCTGAGTTGCTGCAATCTATT
____________________________________________________________
consensus CGCGGCATGATAAAATCAGGTGATCTAGTTATCGCTGTATCTGACATGCTGCAATCTATT
. : . : . : . : . : . :
rJMSF008D15+ CAAGTCATGGATGTTCCATAAGAATGCATATCTTTAGAGTACTTTATGTTACCAGAAATA
rJMFF011J15+ CAAGTCATGGATGTTCCATAAGAATGCATATCTTTAGAGTACTTTATGTTACCAGAAATA
rJMFF045B21+ CAAGTCATGGATGTTCCATAAGAATGCATATCTTTAGAGTACTTTATGTTACCAGAAATA
rJMFF047J22+ CAAGTCATGGATGTTCCATAAGAATGCATATCTTTAGAGTACTTTATGTTACCAGAAATA
rJMFF048B03+ CAAGTCATGGATGTTCCATAAGAATGCATATCTTTAGAGTACTTTATGTTACCAGAAATA
____________________________________________________________
consensus CAAGTCATGGATGTTCCATAAGAATGCATATCTTTAGAGTACTTTATGTTACCAGAAATA
. : . : . : . : . : . :
rJMSF008D15+ ATAGTCACAACT
rJMFF011J15+ ATAGTCACAACTTGAAGCTTATTAGCACCATTATATA
rJMFF045B21+ ATAGTCACAACTTGAAGCTTATTAGCACCATTATATATTATGCTGTTTTTTCTTG
rJMFF047J22+ ATAGTCACAACTTGAAGCTTATTAGCACCATTATATATTATGCTGTTTTTTCTTG
rJMFF048B03+ ATAGTCACAACTTGAAGCTTATTAGCACCATTATATATTATGCTGTTTTTTCTTGTCCAG
____________________________________________________________
consensus ATAGTCACAACTTGAAGCTTATTAGCACCATTATATATTATGCTGTTTTTTCTTGTCCAG