Contig 005544:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027L12Sequence566000969 (2)ref|XP_009763337.1|4e-115PREDICTED: GDP-mannose 3,5-epimerase 1 [Nicotiana sylvestris]718005544 (3)gb|KDO48921.1|3e-95hypothetical protein CISIN_1g017216mg [Citrus sinensis]
JMFF047P22Sequence588005544 (3)ref|XP_006486731.1|2e-45PREDICTED: GDP-mannose 3,5-epimerase 1-like [Citrus sinensis] ref|XP_006486732.1
JMSF047P21Sequence651000969 (2)gb|ACU16974.1|2e-116unknown [Glycine max]753005544 (3)gb|KCW85270.1|6e-111hypothetical protein EUGRSUZ_B02118 [Eucalyptus grandis]

Alignment

This contig is upended


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rJMSF047P21+                               TGAAGAGTTATGCNAGCATTATAACAAAGATTTTGGAAT
                      ____________________________________________________________
consensus                                  TGAAGAGTTATGCNAGCATTATAACAAAGATTTTGGAAT
 
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rJMSF047P21+          TGAATGTCGTATTGGAAGATTCCATAACATTTATGGTCCATTTGGCACATGGAAAGGTGG
                      ____________________________________________________________
consensus             TGAATGTCGTATTGGAAGATTCCATAACATTTATGGTCCATTTGGCACATGGAAAGGTGG
 
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rJMSF047P21+          AAGAGAAAAAGCCCCTGCCGCCTTTTGTAGAAAGGCTATCACTTCAACCGATCGGTTTGA
rJMFF027L12+                                                                    GA
                      ____________________________________________________________
consensus             AAGAGAAAAAGCCCCTGCCGCCTTTTGTAGAAAGGCTATCACTTCAACCGATCGGTTTGA
 
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rJMSF047P21+          AATGTGGGGAGATGGGCTTCAAACGCGTTCTTTTACTTTTATTGATGAGTGTGTTGAAGG
rJMFF027L12+          AATGTGGGGAGATGGGCTTCAAACGCGTTCTTTTACTTTTATTGATGAGTGTGTTGAAGG
                      ____________________________________________________________
consensus             AATGTGGGGAGATGGGCTTCAAACGCGTTCTTTTACTTTTATTGATGAGTGTGTTGAAGG
 
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rJMSF047P21+          TGTCCTGAGATTGACCAAGTCAGACTTCCGTGAGGCGGTTAACATTGGAAGTGATGAGAT
rJMFF027L12+          TGTCCTGAGATTGACCAAGTCAGACTTCCGTGAGGCGGTTAACATTGGAAGTGATGAGAT
                      ____________________________________________________________
consensus             TGTCCTGAGATTGACCAAGTCAGACTTCCGTGAGGCGGTTAACATTGGAAGTGATGAGAT
 
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rJMSF047P21+          GGTTAGCATGAACGAGATGGCTGAGATGGTTCTGAGTTTCGAGGACAAGAAGCTGCCAAT
rJMFF027L12+          GGTTAGCATGAACGAGATGGCTGAGATGGTTCTGAGTTTCGAGGACAAGAAGCTGCCAAT
                      ____________________________________________________________
consensus             GGTTAGCATGAACGAGATGGCTGAGATGGTTCTGAGTTTCGAGGACAAGAAGCTGCCAAT
 
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rJMSF047P21+          CCACCATATTCCTGGCCCAGAAGGCGTTCGTGGTCGAAACTCAGACAACACACTTATAAA
rJMFF027L12+          CCACCATATTCCTGGCCCAGAAGGCGTTCGTGGTCGAAACTCAGACAACACACTTATAAA
rJMFF047P22+                      TGGCCCAGAAGGCGTTCGTGGTCGAAACTCAGACAACACACTTATAAA
                      ____________________________________________________________
consensus             CCACCATATTCCTGGCCCAGAAGGCGTTCGTGGTCGAAACTCAGACAACACACTTATAAA
 
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rJMSF047P21+          GGAGAAACTTGGTTGGGCCCCATCAATGAAATTAAAGGATGGGTTGAGAATTACGTACTT
rJMFF027L12+          GGAGAAACTTGGTTGGGCCCCATCAATGAAATTAAAGGATGGGTTGAGAATTACGTACTT
rJMFF047P22+          GGAGAAACTTGGTTGGGCCCCATCAATGAAATTAAAGGATGGGTTGAGAATTACGTACTT
                      ____________________________________________________________
consensus             GGAGAAACTTGGTTGGGCCCCATCAATGAAATTAAAGGATGGGTTGAGAATTACGTACTT
 
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rJMSF047P21+          CTGAATCAAGGAACAAATTGAGAAAGAGAAAACTCAAGGCC--GATATTTCTGTATATGG
rJMFF027L12+          CTGGATCAAGGAACAAATTGAGAAAGAGAAAACTCAAGGCCGAGATATTTCTGTATATGG
rJMFF047P22+          CTGGATCAAGGAACAAATTGAGAAAGAGAAAACTCAAGGCCGAGATATTTCTGTATATGG
                      ____________________________________________________________
consensus             CTGGATCAAGGAACAAATTGAGAAAGAGAAAACTCAAGGCCGAGATATTTCTGTATATGG
 
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rJMSF047P21+          ATCGTCAAAAGTAGTGGGAACTCAAGCACCGGTGCAACTCGGCTCACTCCGGGCTGCTGA
rJMFF027L12+          ATCGTCAAAAGTAGTGGGAACTCAAGCACCGGTGCAACTCGGCTCACTCCGGGCTGCTGA
rJMFF047P22+          ATCGTCAAAAGTAGTGGGAACTCAAGCACCGGTGCAACTCGGCTCACTCCGGGCTGCTGA
                      ____________________________________________________________
consensus             ATCGTCAAAAGTAGTGGGAACTCAAGCACCGGTGCAACTCGGCTCACTCCGGGCTGCTGA
 
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rJMSF047P21+          TGGAAAGGAATAACGTGGTCCTATTCTCGAGTCAATGTGGGGCCCTTTCATCGCGTAACT
rJMFF027L12+          TGGAAAGGAATAACGTGGTCCTATTCTCGAGTCAATGTGGGGCCCTTTCATCGCGTAACT
rJMFF047P22+          TGGAAAGGAATAACGTGGTCCTATTCTCGAGTCAATGTGGGGCCCTTTCATCGCGTAACT
                      ____________________________________________________________
consensus             TGGAAAGGAATAACGTGGTCCTATTCTCGAGTCAATGTGGGGCCCTTTCATCGCGTAACT
 
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rJMSF047P21+          GGGTAATGTGGAGTCAAAGAATTTCTGGGATGTAACGTATTACGGTTTTTTTTATTTGAA
rJMFF027L12+          GGGTAATGTGGAGTCAAAGAATTTCTGGGATGTAACGTATTACGGTTTTTTTTATTTGAA
rJMFF047P22+          GGGTAATGTGGAGTCAAAGAATTTCTGGGATGTAACGTATTACGGTTTTTTTTATTTGAA
                      ____________________________________________________________
consensus             GGGTAATGTGGAGTCAAAGAATTTCTGGGATGTAACGTATTACGGTTTTTTTTATTTGAA
 
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rJMSF047P21+          TAGTACTTGTCGTTTTGGTAACCTAAACTGCTTTGTCCTATGCTTTAAATC         
rJMFF027L12+          TAGTACTTGTCGTTTTGGTAACCTAAACTGCTTTGTCCTATGCTTTAAATCAGTTATGTT
rJMFF047P22+          TAGTACTTGTCGTTTTGGTAACCTAAACTGCTTTGTCCTATGCTTTAAATCAGTTATGTT
                      ____________________________________________________________
consensus             TAGTACTTGTCGTTTTGGTAACCTAAACTGCTTTGTCCTATGCTTTAAATCAGTTATGTT
 
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rJMFF027L12+          TTTCTATGTAGTCATAAACTGTTATTGCTGGCTCCCCTTGTTCTTGTTTGTCTTGTGTAA
rJMFF047P22+          TTTCTATGTAGTCATAAACTGTTATTGCTGGCTCCCCTTGTTCTTGTTTGTCTTGTGTAA
                      ____________________________________________________________
consensus             TTTCTATGTAGTCATAAACTGTTATTGCTGGCTCCCCTTGTTCTTGTTTGTCTTGTGTAA
 
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rJMFF027L12+          TTTTGGGTAATATGTTTGTGCTAAGATGACTAGCAAGCCAGTTGG               
rJMFF047P22+          TTTTGGGTAATATGTTTGTGCTAAGATGACTAGCAAGCCAGTTGGATTGATTGAAATGGA
                      ____________________________________________________________
consensus             TTTTGGGTAATATGTTTGTGCTAAGATGACTAGCAAGCCAGTTGGATTGATTGAAATGGA
 
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rJMFF047P22+          CATTATAACAAGGACAAGAGAACATATTGTTGGTATAATGTTATGTATGCTCAATTATCC
                      ____________________________________________________________
consensus             CATTATAACAAGGACAAGAGAACATATTGTTGGTATAATGTTATGTATGCTCAATTATCC