Contig 005541:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFF002P04-                                                      AAATACATTCCTCTCGG
                      ____________________________________________________________
consensus                                                        AAATACATTCCTCTCGG
 
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JMFF002P04-           GAGCTCTTATCTCTCCTGTTCTCTTATTGCATTTTCGTCTACTTTTTTTCCATTTTCTTT
JMFF047K07-                            GTTCTCTTATTGCATTTTCGTCTACTTTTTTTCCATTTTCTTT
                      ____________________________________________________________
consensus             GAGCTCTTATCTCTCCTGTTCTCTTATTGCATTTTCGTCTACTTTTTTTCCATTTTCTTT
 
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JMFF002P04-           TTCAATAAAAATCCCCCTTGCGCTACACAGATTACAGAGAAACCAAACGCCAGCCGGGGA
JMFF047K07-           TTCAATAAAAATCCCCCTTGCGCTACACAGATTACAGAGAAACCAAACGCCAGCCGGGGA
                      ____________________________________________________________
consensus             TTCAATAAAAATCCCCCTTGCGCTACACAGATTACAGAGAAACCAAACGCCAGCCGGGGA
 
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JMFF002P04-           GGATCGTGTNTCGGTTCCCTTGTTTTCCGATACNAAGTTGAAACGTTTGAGCTGGATCTA
JMFF047K07-           GGATCGTGTTTCGGTTCCCTTGTTTTCCGATACGAAGTTGAAACGTTTGAGCTGGATCTA
JMFF004H07-                                                  GAAACGTTTGAGCTGGATCTA
                      ____________________________________________________________
consensus             GGATCGTGTTTCGGTTCCCTTGTTTTCCGATACGAAGTTGAAACGTTTGAGCTGGATCTA
 
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JMFF002P04-           AGNGGGAATNGACNGGACTGGTTGGCATGGCTTCCAAGCGGATCTTGA            
JMFF047K07-           AGTGGGAATTGACAGGACTGGTTGGCATGGCTTCCAAGCGGATCTTGAAGGAGCTCAAGG
JMFF004H07-           AGTGGGAATTGACAGGACTGGTTGGCATGGCTTCCAAGCGGATCTTGAAGGAGCTCAAGG
rJMFF004H07+                                 GGCATGGCTTCCAAGCGGATCTTGAAGGAGCTCAAGG
rJMFF002P04+              GGAATTGACAGGACTGGTTGGCATGGCTTCCAAGCGGATCTTGAAGGAGCTCAAGG
                      ____________________________________________________________
consensus             AGTGGGAATTGACAGGACTGGTTGGCATGGCTTCCAAGCGGATCTTGAAGGAGCTCAAGG
 
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JMFF047K07-           ATCTTCAGAAGGATCCTCCTACTTCGTGCAGCGCTGGTCCTGTTGCTGAGGACATGTTTC
JMFF004H07-           ATCTTCAGAAGGATCCTCCTACTTCGTGCAGCGCTGGTCCTGTTGCTGAGGACATGTTTC
rJMFF004H07+          ATCTTCAGAAGGATCCTCCTACTTCGTGCAGCGCTGGTCCTGTTGCTGAGGACATGTTTC
rJMFF002P04+          ATCTTCAGAAGGATCCTCNTACTTCGTGCAGCGCTGGTCCTGTTGCTGAGGACATGTTTC
                      ____________________________________________________________
consensus             ATCTTCAGAAGGATCCTCCTACTTCGTGCAGCGCTGGTCCTGTTGCTGAGGACATGTTTC
 
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JMFF047K07-           ATTGGCAAGCTACAAT-CATGGGCCCTCCAGATAGTCCTTACACTGGTGGAGTTTTCTTG
JMFF004H07-           ATTGGCAAGCTACAAT-CATGGGCCCTCCAGATAGTCCTTATACTGGTGGAGTTTTCTTG
rJMFF004H07+          ATTGGCAAGCTACAAT-CATGGGCCCTCCAGATAGTCCTTATACTGGTGGAGTTTTCTTG
rJMFF002P04+          ATTGGCAAGCTACAATCCATGGGCCCTCCAGATAGTCCTTATACTGGTGGAGTTTTCTTG
                      ____________________________________________________________
consensus             ATTGGCAAGCTACAAT-CATGGGCCCTCCAGATAGTCCTTATACTGGTGGAGTTTTCTTG
 
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JMFF047K07-           GTTACCATCCATTTTCCGCCAGATTACCCTTTCAAGCCACCAAAGGTGGCTTTCAAGACA
JMFF004H07-           GTTACCATCCATTTTCCGCCAGATTACCCTTTCAAGCCACCAAAGGTGGCTTTCAAGACA
rJMFF004H07+          GTTACCATCCATTTTCCGCCAGATTACCCTTTCAAGCCACCAAAGGTGGCTTTCAAGACA
rJMFF002P04+          GTTACCATCCATTTTCCGCCAGATTACCCTTTCAAGCCACCAAAGGTGGCTTTCAAGACA
                      ____________________________________________________________
consensus             GTTACCATCCATTTTCCGCCAGATTACCCTTTCAAGCCACCAAAGGTGGCTTTCAAGACA
 
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JMFF047K07-           AAGGTTTTCCACCCAAACATAAACAGCAATGGTAGCATATGCCTTGACATTTTGAAGGAG
JMFF004H07-           AAGGTTTTCCACCCAAACATAAACAGCAATGGTAGCATATGCCTTGACATTTTGAAGGAG
rJMFF004H07+          AAGGTTTTCCACCCAAACATAAACAGCAATGGTAGCATATGCCTTGACATTTTGAAGGAG
rJMFF002P04+          AAGGTTTTCCACCCAAACATAAACAGCAATGGTAGCATATGCCTTGACATTTTGAAGGAG
                      ____________________________________________________________
consensus             AAGGTTTTCCACCCAAACATAAACAGCAATGGTAGCATATGCCTTGACATTTTGAAGGAG
 
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JMFF047K07-           CAGTGGAGTCCTGCGCT                                           
JMFF004H07-           CAGTGGAGTCCTGCGCTA                                          
rJMFF004H07+          CAGTGGAGTCCTGCGCTAACAATTTCCAAGGTGTTGCTTTCAATCTGCTCTCTGTTGACG
rJMFF002P04+          CAGTGGAGTCCTGCGCTAACAATTTCCAAGGTGTTGCTTTCAATCTGCTCTCTGTTGACG
                      ____________________________________________________________
consensus             CAGTGGAGTCCTGCGCTAACAATTTCCAAGGTGTTGCTTTCAATCTGCTCTCTGTTGACG
 
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rJMFF004H07+          GATCCAAATCCTGATGATCCCTTGGTACCAGAAATTGCACACATGTACAAGACTGATAGG
rJMFF002P04+          GATCCAAATCCTGATGATCCCTTGGTACCAGAAATTGCACACATGTACAAGACTGATAGG
                      ____________________________________________________________
consensus             GATCCAAATCCTGATGATCCCTTGGTACCAGAAATTGCACACATGTACAAGACTGATAGG
 
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rJMFF004H07+          ACCAAATATGAGAGTACTGCAAGGAGCTGGACTCAGAAGTATGCTATGGGCTAAGCCTGC
rJMFF002P04+          ACCAAATATGAGAGTACTGCAAGGAGCTGGACTCAGAAGTATGCTATGGGCTAAGCCTGC
                      ____________________________________________________________
consensus             ACCAAATATGAGAGTACTGCAAGGAGCTGGACTCAGAAGTATGCTATGGGCTAAGCCTGC
 
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rJMFF004H07+          TTGGGTATGTGCAAGGGAAGGCATTGTGCTTTCAAGTATCTTGGTCTTTGCAATTTATAT
rJMFF002P04+          TTGGGTATGTGCAAGGGAAGGCATTGTGCTTTCAAGTATCTTGGTCTTTGCAATTTATAT
rJMFF047K07+                             GGCATTGTGCTTTCAAGTATCTTGGTCTTTGCAATTTATAT
                      ____________________________________________________________
consensus             TTGGGTATGTGCAAGGGAAGGCATTGTGCTTTCAAGTATCTTGGTCTTTGCAATTTATAT
 
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rJMFF004H07+          TTGAATTAGTTGATTGTCTCTTGAGTTGTTAAATGGGAAATGGAGAAGTCCATGCCCTGA
rJMFF002P04+          TTGAATTAGTTGATTGTCTCTTGAGTTGTTAAATGGGAAATGGAGAAGTCCATGCCCTGA
rJMFF047K07+          TTGAATTAGTTGATTGTCTCTTGAGTTGTTAAATGGGAAATGGAGAAGTCCATGCCCTGA
                      ____________________________________________________________
consensus             TTGAATTAGTTGATTGTCTCTTGAGTTGTTAAATGGGAAATGGAGAAGTCCATGCCCTGA
 
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rJMFF004H07+          ATGGGAGGGAGGAAAATCATGGAGTGTGCTGTTAAACATTTTTTCTTTATAATGTGATCT
rJMFF002P04+          ATGGGAGGGAGGAAAATCATGGAGTGTGCTGTTAAACATTTTTTCTTTATAATGTGATCT
rJMFF047K07+          ATGGGAGGGAGGAAAATCATGGAGTGTGCTGTTAAACATTTTTTCTTTATAATGTGATCT
                      ____________________________________________________________
consensus             ATGGGAGGGAGGAAAATCATGGAGTGTGCTGTTAAACATTTTTTCTTTATAATGTGATCT
 
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rJMFF004H07+          G                                                           
rJMFF002P04+          GTGAAAGAAACTGCGGAGATACCTTCTCTCCCAATTAATTGCTTGTGTTAACTCTAAGTC
rJMFF047K07+          GTGAAAGAAACTGGGGAGATACCTTTTTTCCCAATTAATTGCTTGTGTTAACTTTAAGTC
                      ____________________________________________________________
consensus             GTGAAAGAAACTGGGGAGATACCTTTTTTCCCAATTAATTGCTTGTGTTAACTTTAAGTC
 
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rJMFF002P04+          C                                                           
rJMFF047K07+          CAATTACATATTTTGTGGCTCCCAGTCTTGCTCTTTTTTTAAGCAAAATAGAATTTTTTT
                      ____________________________________________________________
consensus             CAATTACATATTTTGTGGCTCCCAGTCTTGCTCTTTTTTTAAGCAAAATAGAATTTTTTT
 
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rJMFF047K07+          AGTGGGATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCCAGGGT
                      ____________________________________________________________
consensus             AGTGGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTCCAGGGT