Contig 005539:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009D19Sequence510005187 (9)ref|XP_006365414.1|9e-36PREDICTED: probable inactive receptor kinase At1g48480-like [Solanum tuberosum]237005539 (3)
JMFF040H13Sequence499005187 (9)ref|XP_006365414.1|1e-33PREDICTED: probable inactive receptor kinase At1g48480-like [Solanum tuberosum]237005539 (3)
JMFF047I11Sequence538005187 (9)ref|XP_009759771.1|8e-37PREDICTED: probable inactive receptor kinase At1g48480 [Nicotiana sylvestris]390005539 (3)

Alignment

This contig is upended


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rJMFF047I11+                                        GAACCAAAGGACCAAATTTGATCATGCTAC
                      ____________________________________________________________
consensus                                           GAACCAAAGGACCAAATTTGATCATGCTAC
 
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rJMFF047I11+          AGAAGTTACTATTGTTGGGCATTATTATCTTTTAGAATTAACAGCTGATGCTCCCACCCC
                      ____________________________________________________________
consensus             AGAAGTTACTATTGTTGGGCATTATTATCTTTTAGAATTAACAGCTGATGCTCCCACCCC
 
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rJMFF009D19+                                                                  TTTT
rJMFF040H13+                                                                  TTTT
rJMFF047I11+          TCAACCCCCATTTATTGTGATTCTCCATTGTAGTACTAGCATCTTCTTAGTTTCCATTTT
                      ____________________________________________________________
consensus             TCAACCCCCATTTATTGTGATTCTCCATTGTAGTACTAGCATCTTCTTAGTTTCCATTTT
 
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rJMFF009D19+          TTTTTTTTTTTGGGAGTTGGAGGTGGGGTCTGTTATCTGTTACATTTTTTCTTGTTGGGT
rJMFF040H13+          TTTTTTTTTTTGGGAGTTGGAGGTGGGGTCTGTTATCTGTTACATTTTTTCTTGTTGGGT
rJMFF047I11+          TTTTTTTTTTTGGGAGTTGGAGGTGGGGTCTGTTATCTGTTACATTTTTTCTTGTTGGGT
                      ____________________________________________________________
consensus             TTTTTTTTTTTGGGAGTTGGAGGTGGGGTCTGTTATCTGTTACATTTTTTCTTGTTGGGT
 
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rJMFF009D19+          GGATGTTGTGCCTGTAATTATTACTTCAGCTTTTACTTTTGCTTTTGGCTTTGCAACCAG
rJMFF040H13+          GGATGTTGTGCCTGTAATTATTACTTCAGCTTTTACTTTTGCTTTTGGCTTTGCAACCAG
rJMFF047I11+          GGATGTTGTGCCTGTAATTATTACTTCAGCTTTTACTTTTGCTTTTGGCTTTGCAACCAG
                      ____________________________________________________________
consensus             GGATGTTGTGCCTGTAATTATTACTTCAGCTTTTACTTTTGCTTTTGGCTTTGCAACCAG
 
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rJMFF009D19+          TCTTGCGGTGTTGTGATGTTGAAATCTCTCATCTTTCATTTTCATTTGGGGGGTGGGTAG
rJMFF040H13+          TCTTGCGGTGTTGTGATGTTGAAATCTCTCATCTTTCATTTTCATTTGGGGGGTGGGTAG
rJMFF047I11+          TCTTGCGGTGTTGTGATGTTGAAATCTCTCATCTTTCATTTTCATTTGGGGGGTGGGTAG
                      ____________________________________________________________
consensus             TCTTGCGGTGTTGTGATGTTGAAATCTCTCATCTTTCATTTTCATTTGGGGGGTGGGTAG
 
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rJMFF009D19+          TTACTAGTTAGTTTGCTACTAATATGATACCTTACTTTAATNTACNAAAAA         
rJMFF040H13+          TTACTAGTTAGTTTGCTACTAATATGATACC                             
rJMFF047I11+          TTACTAGTTAGTTTGCTACTAATATGATACCTTACTTTAATTTACAAAAAAAATTGGTAC
                      ____________________________________________________________
consensus             TTACTAGTTAGTTTGCTACTAATATGATACCTTACTTTAATTTACAAAAAAAATTGGTAC