Contig 005538:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016P12Sequence565005538 (4)ref|XP_006364308.1|6e-55PREDICTED: receptor-like protein kinase HSL1-like [Solanum tuberosum]541005538 (4)ref|XP_006364308.1|4e-55PREDICTED: receptor-like protein kinase HSL1-like [Solanum tuberosum]
JMFF047H13Sequence581005538 (4)ref|XP_009621303.1|2e-53PREDICTED: receptor-like protein kinase HSL1 [Nicotiana tomentosiformis]568005538 (4)ref|XP_011096363.1|8e-49PREDICTED: receptor-like protein kinase HSL1 [Sesamum indicum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF016P12+ GATCAAACTTGT
JMFF047H13+ CTTTTTTTTTTTTNTTGATCAAACTTGT
rJMFF047H13- CTTTTTTTTTTTTTTTGATCAAACTTGT
                      ____________________________________________________________
consensus CTTTTTTTTTTTTTTTGATCAAACTTGT
 
. : . : . : . : . : . :
JMFF016P12+ TAACAGTAGAAAATTTTGTGGGATGAGTAATTTACAATCAAATCAATCCAACTATCCACA
rJMFF016P12- ATTTTGTGGGATGAGTAATTTACAATCAAATCAATCCAACTATCCACA
JMFF047H13+ TAACAGTAGAAAATTTTGTGGGATGAGTAATTTACAATCAAATCAATCCAACTATCCACA
rJMFF047H13- TAACAGTAAAAAATTTTGTGGGATGAGTAATTTACAATCAAATCAATCCAACTATCCACA
                      ____________________________________________________________
consensus TAACAGTAGAAAATTTTGTGGGATGAGTAATTTACAATCAAATCAATCCAACTATCCACA
 
. : . : . : . : . : . :
JMFF016P12+ AGTAGTTTTCTACTCTCTCTTTCTCTGTCTCACTTCAATTCTTCTGTCATGTTGTCTTCA
rJMFF016P12- AGTAGTTTTCTACTCTCTCTTTCTCTGTCTCACTTCAATTCTTCTGTCATGTTGTCTTCA
JMFF047H13+ AGTAGTTTTCTACTCTCTCTTTCTCTGTCTCACTTCAATTCTTCTGTCATGTTGTCTTCA
rJMFF047H13- AGTAGTTTTCTACTCTCTCTTTCTCTGTCTCACTTCAATTCTTCTGTCATGTTGTCTTCA
                      ____________________________________________________________
consensus AGTAGTTTTCTACTCTCTCTTTCTCTGTCTCACTTCAATTCTTCTGTCATGTTGTCTTCA
 
. : . : . : . : . : . :
JMFF016P12+ CTCTTCACCCTCATGCAATTAAAACACAGACCAAGTGGGGACTGGGAATAAAACTGGGTA
rJMFF016P12- CTCTTCACCCTCATGCAATTAAAACACAGACCAAGTGGGGACTGGGAATAAAACTGGGTA
JMFF047H13+ CTCTTCACCCTCATGCAATTAAAACACAGACCAAGTGGGGACTGGGAATAAAACTGGGTA
rJMFF047H13- CTCTTCACCCTCATGCAATTAAAACACAGACCAAGTGGGGACTGGGAATAAAACTGGGTA
                      ____________________________________________________________
consensus CTCTTCACCCTCATGCAATTAAAACACAGACCAAGTGGGGACTGGGAATAAAACTGGGTA
 
. : . : . : . : . : . :
JMFF016P12+ GTTAGCAGATGGAGAAGAGAATCCAAAGGGGCCATCCATCATCCATTCTATGCTGTGCTT
rJMFF016P12- GTTAGCAGATGGAGAAGAGAATCCAAAGGGGCCATCCATCATCCATTCTATGCTGTGCTT
JMFF047H13+ GTTAGCAGATGGAGAAGAGAATCCAAAGGGGCCATCCATCATCCATTCTATGCTGTGCTT
rJMFF047H13- GTTAGCAAATGGAAAAAAGAATCCAAAGGGGCCATCCATCATCCATTCTATGCTGTGCTT
                      ____________________________________________________________
consensus GTTAGCAGATGGAGAAGAGAATCCAAAGGGGCCATCCATCATCCATTCTATGCTGTGCTT
 
. : . : . : . : . : . :
JMFF016P12+ CCATGATCAGACGCGTCTTCGTAGTAGTAAGGCGTTAACTTCCCGTCCTTCGAGCCCGCC
rJMFF016P12- CCATGATCAGACGCGTCTTCGTAGTAGTAAGGCGTTAACTTCCCGTCCTTCGAGCCCGCC
JMFF047H13+ CCATGATCAGACGCGTCTTCGTAGTAGTAAGGCGTTAACTTCCCGTCCTTCGAGCCCGCC
rJMFF047H13- CCATGATCAAACGCGTCTTCGTAGTAGTAAGGCGTTAACTTCCCGTCCTTCGAGCCCGCC
                      ____________________________________________________________
consensus CCATGATCAGACGCGTCTTCGTAGTAGTAAGGCGTTAACTTCCCGTCCTTCGAGCCCGCC
 
. : . : . : . : . : . :
JMFF016P12+ TTTGGCTGCTGCTTCCCCGCTTCGCCTACTTCTTGCAGCATCTTCACCACGCGTCTCATG
rJMFF016P12- TTTGGCTGCTGCTTCCCCGCTTCGCCTACTTCTTGCAGCATCTTCACCACGCGTCTCATG
JMFF047H13+ TTTGGCTGCTGCTTCCCCGCTTCGCCTACTTCTTGCAGCATCTTCACCACGCGTCTCATG
rJMFF047H13- TTTGGCTGCTGCTTCCCCGCTTCGCCTACTTCTTGCAGCATCTTCACCACGCGTCTCATG
                      ____________________________________________________________
consensus TTTGGCTGCTGCTTCCCCGCTTCGCCTACTTCTTGCAGCATCTTCACCACGCGTCTCATG
 
. : . : . : . : . : . :
JMFF016P12+ GAAGGGCGGTTGATCGGGAGAGGGCTGGTGCAGAGGAGGCCAATGTTGAGAACTTTGCAG
rJMFF016P12- GAAGGGCGGTTGATCGGGAGAGGGCTGGTGCAGAGGAGGCCAATGTTGAGAACTTTGCAG
JMFF047H13+ GAAGGGCGGTTGATCGGGAGAGGGCTGGTGCAGAGGAGGCCAATGTTGAGAACTTTGCAG
rJMFF047H13- GAAGGGCGGTTGATCGGGAAAGGGCTGGTGCAAAGGAGGCCAATGTTGAGAACTTTGCAG
                      ____________________________________________________________
consensus GAAGGGCGGTTGATCGGGAGAGGGCTGGTGCAGAGGAGGCCAATGTTGAGAACTTTGCAG
 
. : . : . : . : . : . :
JMFF016P12+ ATTTCTTCCTTGAAACAGGAATCCAGTTTTGGATCAATCACATTCTCTATGCCTTTCTGG
rJMFF016P12- ATTTCTTCCTTGAAACAGGAATCCAGTTTTGGATCAATCACATTCTCTATGCCTTTCTGG
JMFF047H13+ ATTTCTTCCTTGAAACAGGAATCCAGTTTTGGATCAATCACATTCTCTATGCCTTTCTGG
rJMFF047H13- ATTTCTTCCTTGAAACAGGAATCCAGTTTTGGATCAATCACATTCTCTATGCCTTTCTGG
                      ____________________________________________________________
consensus ATTTCTTCCTTGAAACAGGAATCCAGTTTTGGATCAATCACATTCTCTATGCCTTTCTGG
 
. : . : . : . : . : . :
JMFF016P12+ TCCAAAGTGGTGCATACCCACTTCACTAAATCCTTTTCCCCGA
rJMFF016P12- TCCAAAGTGGTGCATACCCACTTCACTAAATCCTTTTCCCCGA
JMFF047H13+ TCCAAAGTGGTGCATACCCACTTCACTAAATCCTTTTCCCCGA
rJMFF047H13- TCCAAAGTGGTGCATACCCACTTCACTAAATCCTTTTCCCCGAGCTCGGGATCTACCGGG
                      ____________________________________________________________
consensus TCCAAAGTGGTGCATACCCACTTCACTAAATCCTTTTCCCCGAGCTCGGGATCTACCGGG