Contig 005538:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016P12Sequence565005538 (4)ref|XP_006364308.1|6e-55PREDICTED: receptor-like protein kinase HSL1-like [Solanum tuberosum]541005538 (4)ref|XP_006364308.1|4e-55PREDICTED: receptor-like protein kinase HSL1-like [Solanum tuberosum]
JMFF047H13Sequence581005538 (4)ref|XP_009621303.1|2e-53PREDICTED: receptor-like protein kinase HSL1 [Nicotiana tomentosiformis]568005538 (4)ref|XP_011096363.1|8e-49PREDICTED: receptor-like protein kinase HSL1 [Sesamum indicum]

Alignment

This contig is upended


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JMFF016P12+                                                           GATCAAACTTGT
JMFF047H13+                                           CTTTTTTTTTTTTNTTGATCAAACTTGT
rJMFF047H13-                                          CTTTTTTTTTTTTTTTGATCAAACTTGT
                      ____________________________________________________________
consensus                                             CTTTTTTTTTTTTTTTGATCAAACTTGT
 
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JMFF016P12+           TAACAGTAGAAAATTTTGTGGGATGAGTAATTTACAATCAAATCAATCCAACTATCCACA
rJMFF016P12-                      ATTTTGTGGGATGAGTAATTTACAATCAAATCAATCCAACTATCCACA
JMFF047H13+           TAACAGTAGAAAATTTTGTGGGATGAGTAATTTACAATCAAATCAATCCAACTATCCACA
rJMFF047H13-          TAACAGTAAAAAATTTTGTGGGATGAGTAATTTACAATCAAATCAATCCAACTATCCACA
                      ____________________________________________________________
consensus             TAACAGTAGAAAATTTTGTGGGATGAGTAATTTACAATCAAATCAATCCAACTATCCACA
 
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JMFF016P12+           AGTAGTTTTCTACTCTCTCTTTCTCTGTCTCACTTCAATTCTTCTGTCATGTTGTCTTCA
rJMFF016P12-          AGTAGTTTTCTACTCTCTCTTTCTCTGTCTCACTTCAATTCTTCTGTCATGTTGTCTTCA
JMFF047H13+           AGTAGTTTTCTACTCTCTCTTTCTCTGTCTCACTTCAATTCTTCTGTCATGTTGTCTTCA
rJMFF047H13-          AGTAGTTTTCTACTCTCTCTTTCTCTGTCTCACTTCAATTCTTCTGTCATGTTGTCTTCA
                      ____________________________________________________________
consensus             AGTAGTTTTCTACTCTCTCTTTCTCTGTCTCACTTCAATTCTTCTGTCATGTTGTCTTCA
 
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JMFF016P12+           CTCTTCACCCTCATGCAATTAAAACACAGACCAAGTGGGGACTGGGAATAAAACTGGGTA
rJMFF016P12-          CTCTTCACCCTCATGCAATTAAAACACAGACCAAGTGGGGACTGGGAATAAAACTGGGTA
JMFF047H13+           CTCTTCACCCTCATGCAATTAAAACACAGACCAAGTGGGGACTGGGAATAAAACTGGGTA
rJMFF047H13-          CTCTTCACCCTCATGCAATTAAAACACAGACCAAGTGGGGACTGGGAATAAAACTGGGTA
                      ____________________________________________________________
consensus             CTCTTCACCCTCATGCAATTAAAACACAGACCAAGTGGGGACTGGGAATAAAACTGGGTA
 
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JMFF016P12+           GTTAGCAGATGGAGAAGAGAATCCAAAGGGGCCATCCATCATCCATTCTATGCTGTGCTT
rJMFF016P12-          GTTAGCAGATGGAGAAGAGAATCCAAAGGGGCCATCCATCATCCATTCTATGCTGTGCTT
JMFF047H13+           GTTAGCAGATGGAGAAGAGAATCCAAAGGGGCCATCCATCATCCATTCTATGCTGTGCTT
rJMFF047H13-          GTTAGCAAATGGAAAAAAGAATCCAAAGGGGCCATCCATCATCCATTCTATGCTGTGCTT
                      ____________________________________________________________
consensus             GTTAGCAGATGGAGAAGAGAATCCAAAGGGGCCATCCATCATCCATTCTATGCTGTGCTT
 
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JMFF016P12+           CCATGATCAGACGCGTCTTCGTAGTAGTAAGGCGTTAACTTCCCGTCCTTCGAGCCCGCC
rJMFF016P12-          CCATGATCAGACGCGTCTTCGTAGTAGTAAGGCGTTAACTTCCCGTCCTTCGAGCCCGCC
JMFF047H13+           CCATGATCAGACGCGTCTTCGTAGTAGTAAGGCGTTAACTTCCCGTCCTTCGAGCCCGCC
rJMFF047H13-          CCATGATCAAACGCGTCTTCGTAGTAGTAAGGCGTTAACTTCCCGTCCTTCGAGCCCGCC
                      ____________________________________________________________
consensus             CCATGATCAGACGCGTCTTCGTAGTAGTAAGGCGTTAACTTCCCGTCCTTCGAGCCCGCC
 
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JMFF016P12+           TTTGGCTGCTGCTTCCCCGCTTCGCCTACTTCTTGCAGCATCTTCACCACGCGTCTCATG
rJMFF016P12-          TTTGGCTGCTGCTTCCCCGCTTCGCCTACTTCTTGCAGCATCTTCACCACGCGTCTCATG
JMFF047H13+           TTTGGCTGCTGCTTCCCCGCTTCGCCTACTTCTTGCAGCATCTTCACCACGCGTCTCATG
rJMFF047H13-          TTTGGCTGCTGCTTCCCCGCTTCGCCTACTTCTTGCAGCATCTTCACCACGCGTCTCATG
                      ____________________________________________________________
consensus             TTTGGCTGCTGCTTCCCCGCTTCGCCTACTTCTTGCAGCATCTTCACCACGCGTCTCATG
 
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JMFF016P12+           GAAGGGCGGTTGATCGGGAGAGGGCTGGTGCAGAGGAGGCCAATGTTGAGAACTTTGCAG
rJMFF016P12-          GAAGGGCGGTTGATCGGGAGAGGGCTGGTGCAGAGGAGGCCAATGTTGAGAACTTTGCAG
JMFF047H13+           GAAGGGCGGTTGATCGGGAGAGGGCTGGTGCAGAGGAGGCCAATGTTGAGAACTTTGCAG
rJMFF047H13-          GAAGGGCGGTTGATCGGGAAAGGGCTGGTGCAAAGGAGGCCAATGTTGAGAACTTTGCAG
                      ____________________________________________________________
consensus             GAAGGGCGGTTGATCGGGAGAGGGCTGGTGCAGAGGAGGCCAATGTTGAGAACTTTGCAG
 
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JMFF016P12+           ATTTCTTCCTTGAAACAGGAATCCAGTTTTGGATCAATCACATTCTCTATGCCTTTCTGG
rJMFF016P12-          ATTTCTTCCTTGAAACAGGAATCCAGTTTTGGATCAATCACATTCTCTATGCCTTTCTGG
JMFF047H13+           ATTTCTTCCTTGAAACAGGAATCCAGTTTTGGATCAATCACATTCTCTATGCCTTTCTGG
rJMFF047H13-          ATTTCTTCCTTGAAACAGGAATCCAGTTTTGGATCAATCACATTCTCTATGCCTTTCTGG
                      ____________________________________________________________
consensus             ATTTCTTCCTTGAAACAGGAATCCAGTTTTGGATCAATCACATTCTCTATGCCTTTCTGG
 
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JMFF016P12+           TCCAAAGTGGTGCATACCCACTTCACTAAATCCTTTTCCCCGA                 
rJMFF016P12-          TCCAAAGTGGTGCATACCCACTTCACTAAATCCTTTTCCCCGA                 
JMFF047H13+           TCCAAAGTGGTGCATACCCACTTCACTAAATCCTTTTCCCCGA                 
rJMFF047H13-          TCCAAAGTGGTGCATACCCACTTCACTAAATCCTTTTCCCCGAGCTCGGGATCTACCGGG
                      ____________________________________________________________
consensus             TCCAAAGTGGTGCATACCCACTTCACTAAATCCTTTTCCCCGAGCTCGGGATCTACCGGG