Contig 005535:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF047B24Sequence620002377 (3)ref|XP_009593160.1|9e-61PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950-like [Nicotiana tome546005535 (3)ref|XP_011076106.1|1e-39PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Sesamum indicum]
JMSF038D24Sequence710002377 (3)ref|XP_009593160.1|1e-81PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950-like [Nicotiana tome856005535 (3)ref|XP_011076106.1|1e-137PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Sesamum indicum]
JMSF038L22Sequence623002377 (3)ref|XP_009593160.1|3e-59PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950-like [Nicotiana tome843005535 (3)ref|XP_011076106.1|4e-126PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Sesamum indicum]

Alignment

This contig is upended


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rJMSF038D24+                                                CTTTGAGATGCTGCAGCCTCGT
                      ____________________________________________________________
consensus                                                   CTTTGAGATGCTGCAGCCTCGT
 
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rJMSF038D24+          TTCTGTGAAATGCTTCTGGCTGAGGTAGAAAATTTTGAAAAGTGGGTCCATGAAACAAAA
rJMSF038L22+                                AGGTAGAAAATTTTGAAAAGTGGGTCCATGAAACAAAA
                      ____________________________________________________________
consensus             TTCTGTGAAATGCTTCTGGCTGAGGTAGAAAATTTTGAAAAGTGGGTCCATGAAACAAAA
 
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rJMSF038D24+          TTCAGAATTATGAGACCAAATACAATGAACAAATTTGGTGCTGTTCTTGATGACTTTGGC
rJMSF038L22+          TTCAGAATTATGAGACCAAATACAATGAACAAATTTGGTGCTGTTCTTGATGACTTTGGC
                      ____________________________________________________________
consensus             TTCAGAATTATGAGACCAAATACAATGAACAAATTTGGTGCTGTTCTTGATGACTTTGGC
 
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rJMSF038D24+          ATGGAAACCATGCTTGAGAAGTTGATGGAAGATTTCATTCGTCCTATTTCTAAAGTTTTC
rJMSF038L22+          ATGGAAACCATGCTTGAGAAGTTGATGGAAGATTTCATTCGTCCTATTTCTAAAGTTTTC
                      ____________________________________________________________
consensus             ATGGAAACCATGCTTGAGAAGTTGATGGAAGATTTCATTCGTCCTATTTCTAAAGTTTTC
 
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rJMSF038D24+          TTTTCAGAGGTTGGTGGATCCACACTTGATACACATCATGGTTTTGTGGTTGAGTATGGA
rJMSF038L22+          TTTTCAGAGGTTGGTGGATCCACACTTGATACACATCATGGTTTTGTGGTTGAGTATGGA
                      ____________________________________________________________
consensus             TTTTCAGAGGTTGGTGGATCCACACTTGATACACATCATGGTTTTGTGGTTGAGTATGGA
 
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rJMSF038D24+          ATGGATAGAGATGTTGACCTAGGTTTCCACGTGGATGATTCAGAAGTCACGTTGAATGTG
rJMSF038L22+          ATGGATAGAGATGTTGACCTAGGTTTCCACGTGGATGATTCAGAAGTCACGTTGAATGTG
                      ____________________________________________________________
consensus             ATGGATAGAGATGTTGACCTAGGTTTCCACGTGGATGATTCAGAAGTCACGTTGAATGTG
 
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rJMSF038D24+          TGTTTGGGCAAGCAGTTTTCTGGTGGAGAACTGTTTTTTCGTGGCATTCGTTGTGAGAAA
rJMSF038L22+          TGTTTGGGCAAGCAGTTTTCTGGTGGAGAACTGTTTTTTCGTGGCATTCGTTGTGAGAAA
rJMFF047B24+                                                                GAGAAA
                      ____________________________________________________________
consensus             TGTTTGGGCAAGCAGTTTTCTGGTGGAGAACTGTTTTTTCGTGGCATTCGTTGTGAGAAA
 
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rJMSF038D24+          CATGTAAATACTGAAACACAACCAGAGGAGAGCTTTGACTATGCCCATGTCCCGGGCCGT
rJMSF038L22+          CATGTAAATACTGAAACACAACCAGAGGAGAGCTTTGACTATGCCCATGTCCCGGGCCGT
rJMFF047B24+          CATGTAAATTCTGAAACACAACCAGAGGAGAGCTTTGACTATGCCCATGTCCCGGGCCGT
                      ____________________________________________________________
consensus             CATGTAAATACTGAAACACAACCAGAGGAGAGCTTTGACTATGCCCATGTCCCGGGCCGT
 
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rJMSF038D24+          GCAGTTCTTCACCGTGGTCGGCATCGGCATGGCGCTAGAGCCACAACAGCAGGCCAGAGG
rJMSF038L22+          GCAGTTCTTCACCGTGGTCGGCATCGGCATGGCGCTAGAGCCACAACAGCAGGCCAGAGG
rJMFF047B24+          GCAGTTCTTCACCGTGGTCGGCATCGGCATGGCGCTAGAGCCACAACAGCAGGCCAGAGG
                      ____________________________________________________________
consensus             GCAGTTCTTCACCGTGGTCGGCATCGGCATGGCGCTAGAGCCACAACAGCAGGCCAGAGG
 
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rJMSF038D24+          ATTAACTTACTGCTTTGGTGCAGAAGTTCTGTGTTTAGAGAGCTCAGGAAGTATCAGAAA
rJMSF038L22+          ATTAACTTACTGCTTTGGTGCAGAAGTTCTGTGTTTAGAGAGCTCAGGAAGTATCAGAAA
rJMFF047B24+          ATTAACTTACTGCTTTGGTGCAGAAGTTCTGTGTTTAGAGAGCTCAGGAAGTATCAGAAA
                      ____________________________________________________________
consensus             ATTAACTTACTGCTTTGGTGCAGAAGTTCTGTGTTTAGAGAGCTCAGGAAGTATCAGAAA
 
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rJMSF038D24+          GATTTTTCTAGCTGGTGTTCCGAATGCCAGCGCGAGAAGAAGGAAAGGCAACGGCAGTCA
rJMSF038L22+          GATTTTTCTAGCTGGTGTTCCGAATGCCAGCGCGAGAAGAAGGAAAGGCAACGGCAGTCA
rJMFF047B24+          GATTTTTCTAGCTGGTGTTCCGAATGCCAGCGCGAGAAGAAGGAAAGGCAACGGCAGTCA
                      ____________________________________________________________
consensus             GATTTTTCTAGCTGGTGTTCCGAATGCCAGCGCGAGAAGAAGGAAAGGCAACGGCAGTCA
 
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rJMSF038D24+          GTCGCCGCCACTAAATTGGAGCTACTGAGAAGAGAAGAAGCGGCTTCATAGTTGATTTGC
rJMSF038L22+          GTCGCCGCCACTAAATTGGAGCTACTGAGAAGAGAAGAAGCGGCTTCATAGTTGATTTGC
rJMFF047B24+          GTCGCCGCCACTAAATTGGAGCTACTGAGAAGAGAAGAAGCGGCTTCATAGTTGATTTGC
                      ____________________________________________________________
consensus             GTCGCCGCCACTAAATTGGAGCTACTGAGAAGAGAAGAAGCGGCTTCATAGTTGATTTGC
 
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rJMSF038D24+          GGCCCTGCCTAGGCCGGGCTGGGCTCCGACTTTATTTTCATTTGTTGTTTAATACTCTCT
rJMSF038L22+          GGCCCTGCCTAGGCCGGGCTGGGCTCCGACTTTATTTTCATTTGTTGTTTAATACTCTCT
rJMFF047B24+          GGCCCTGCCTAGGCCGGGCTGGGCTCCGACTTTATTTTCATTTGTTGTTTAATACTCTCT
                      ____________________________________________________________
consensus             GGCCCTGCCTAGGCCGGGCTGGGCTCCGACTTTATTTTCATTTGTTGTTTAATACTCTCT
 
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rJMSF038D24+          GTAATATAGTGCACCCCTCTTATTTAGGGTATAAAATGCAGTTTCTTAGTGGGGATATTT
rJMSF038L22+          GTAATATAGTGCACCCCTCTTATTTAGGGTATAAAATGCAGTTTCTTAGTGGGGATATTT
rJMFF047B24+          GTAATATAGTGCACCCCTCTTATTTAGGGTATAAAATGCAGTTTTTTAGTGGGGATATTT
                      ____________________________________________________________
consensus             GTAATATAGTGCACCCCTCTTATTTAGGGTATAAAATGCAGTTTCTTAGTGGGGATATTT
 
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rJMSF038D24+          GGAAGGGTGATATACATTTTTCAGCTGTTTCCAAAAGTAGCTGTACAT            
rJMSF038L22+          GGAAGGGTGATATACATTTTTCAGCTGTTTCCAAAAGTAGCTGTACATTGAATCAATTAA
rJMFF047B24+          GGAAGGGTGATATACATTTTTCAGCTGTTTCCAAAAGTAGCTGTACATTGAATCAATTAA
                      ____________________________________________________________
consensus             GGAAGGGTGATATACATTTTTCAGCTGTTTCCAAAAGTAGCTGTACATTGAATCAATTAA
 
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rJMSF038L22+          TGTAGGTATCATGT                                              
rJMFF047B24+          TGTAGGTATCATGTTGTCCAGTTTGCTAACTTGGAAGTCAATAACATATTTTTACCATTT
                      ____________________________________________________________
consensus             TGTAGGTATCATGTTGTCCAGTTTGCTAACTTGGAAGTCAATAACATATTTTTACCATTT