| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF018J22 | Sequence | 500 | 010211 (5) | ref|XP_009778931.1| | 6e-36 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 9-like [Nicotiana sylvestris] | 629 | 005532 (4) | ref|XP_009778931.1| | 3e-23 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 9-like [Nicotiana sylvestris] |
| JMFF046E23 | Sequence | 608 | 010211 (5) | ref|XP_011081365.1| | 2e-47 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 [Sesamum indicum] | 536 | 005532 (4) | |||
| JMFS101D09 | Sequence | 586 | 005532 (4) | ref|XP_009778931.1| | 2e-30 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 9-like [Nicotiana sylvestris] | |||||
| JMSF050H01 | Sequence | 701 | 005532 (4) | ref|XP_009778931.1| | 8e-25 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 9-like [Nicotiana sylvestris] | |||||
This contig is upended
. : . : . : . : . : . :
JMFS101D09- CATCCGAGGGTGCAGAGTT
____________________________________________________________
consensus CATCCGAGGGTGCAGAGTT
. : . : . : . : . : . :
JMFS101D09- TTATGAGTTGTTTGCCATCAGTAATCATTATGGTGGCCTAGGTGGTGGGCATTACTCTGC
rJMFF018J22+ GGGCATTACTCTGC
rJMSF050H01+ GCCATCAGTAATCATTANGGTGGCATAGGTGGTGGGCATTACTCTGC
____________________________________________________________
consensus TTATGAGTTGTTTGCCATCAGTAATCATTATGGTGGCCTAGGTGGTGGGCATTACTCTGC
. : . : . : . : . : . :
JMFS101D09- TTACTGCAAGTTAGTCGATGAGAACAAATGGTATCATTTCGATGATTCCCATGTTTCTGC
rJMFF018J22+ TTACTGCAAGTTAGTCGATGAGAACAAATGGTATCATTTCGATGATTCCCATGTTTCTGC
rJMSF050H01+ TTACTGCAAGTTAGTCGATGAGAACAAATGGTATCATTTCGATGATTCCCATGTTTCTGC
____________________________________________________________
consensus TTACTGCAAGTTAGTCGATGAGAACAAATGGTATCATTTCGATGATTCCCATGTTTCTGC
. : . : . : . : . : . :
JMFS101D09- TGTTGCCGAGTCTGATATAAAGACATCAGCTGCCTATGTGCTCTTCTACCAACGAGTTAA
rJMFF018J22+ TGTTGCCGAGTCTGATATAAAGACATCAGCTGCCTATGTGCTCTTCTACCAACGAGTTAA
rJMSF050H01+ TGTTGCCGAGTCTGATATAAAGACATCAGCTGCCTATGTGCTCTTCTACCAACGANTTAA
____________________________________________________________
consensus TGTTGCCGAGTCTGATATAAAGACATCAGCTGCCTATGTGCTCTTCTACCAACGAGTTAA
. : . : . : . : . : . :
JMFS101D09- GGTGCAAGAAAACGGAACGACTGGAGGACCATCCCACAGTCATACATCATGAAGGCTTTT
rJMFF018J22+ GGTGCAAGAAAACGGAACGACTGGAGGACCATCCCACAGTCATACATCATGAAGGCTTTT
rJMSF050H01+ GGTGCAAGAAAACGGAACGACTGGAGGACCATCCCACAGTCATACATCATGAAGGCTTTN
rJMFF046E23+ CAAGAAAACGGAACGACTGGAGGACCATCCCACAGTCATACATCATGAAGGCTTTT
____________________________________________________________
consensus GGTGCAAGAAAACGGAACGACTGGAGGACCATCCCACAGTCATACATCATGAAGGCTTTT
. : . : . : . : . : . :
JMFS101D09- GCTTAACGTCTGTTTGCCATAATCTATTATTTGGTGCTTCACTTCTTCGAAGGAACTATC
rJMFF018J22+ GCTTAACGTCTGTTTGCCATAATCTATTATTTGGTGCTTCACTTCTTCGAAGGAACTATC
rJMSF050H01+ GCTTAACGTCTGTTNGCCATAATCTATTATTTGGTGCTTCACTTCTTCGAAGGAACTATC
rJMFF046E23+ GCTTAACGTCTGTTTGCCATAATCTATTATTTGGTGCTTCACTTCTTCGAAGGAACTATC
____________________________________________________________
consensus GCTTAACGTCTGTTTGCCATAATCTATTATTTGGTGCTTCACTTCTTCGAAGGAACTATC
. : . : . : . : . : . :
JMFS101D09- AACTCGAGCAATACTTACACACCAAGCGGGTATACACGAAGTTGTAGCTCACTTGGTTTG
rJMFF018J22+ AACTCGAGCAATACTTACACACCAAGCGGGTATACACGAAGTTGTAGCTCACTTGGTTTG
rJMSF050H01+ AACTCGAGCAATACTTACACACCAAGCGGGTATACACGAAGTTGTAGCTCACTTGGTTTG
rJMFF046E23+ AACTCGAGCAATACTTACACACCAAGCGGGTATACACGAAGTTGTAGCTCACTTGGTTTG
____________________________________________________________
consensus AACTCGAGCAATACTTACACACCAAGCGGGTATACACGAAGTTGTAGCTCACTTGGTTTG
. : . : . : . : . : . :
JMFS101D09- CCGCCTTGCCGGTGTATGATGGAGACAATAGAAAGCATGCTTTAAGGTGAAGCATATGCA
rJMFF018J22+ CCGCCTTGCCGGTGTATGATGGAGACAATAGAAAGCATGCTTTAAGGTGAAGCATATGCA
rJMSF050H01+ CCGCCTTGCCGGTGTATGATGGAGACAATAGAAAGCATGCTTTAAGGTGAAGCATATGCA
rJMFF046E23+ CCGCCTNGCCGGTGTATGATGGAGACAATAGAAAGCATGCTTTAAGGTGAAGCATATGCA
____________________________________________________________
consensus CCGCCTTGCCGGTGTATGATGGAGACAATAGAAAGCATGCTTTAAGGTGAAGCATATGCA
. : . : . : . : . : . :
JMFS101D09- GTTTTGTGGAGCAGCTAGGGCACAGAGGGATAGGGGAGAGTCTTAATGGAAGCAAGAGTT
rJMFF018J22+ GTTTTGTGGAGCAGCTAGGGCACAGAGGGATAGGGGAGAGTCTTAATGGAGGCAAGAGTT
rJMSF050H01+ GTTTTGTGGAGCAGCTAGGGCACAGAGGGATAGGGGAGAGTCTTAATGGAAGCAAGAGTT
rJMFF046E23+ GTTTTGTGGAGCAGCTAGGGCACAGAGGGATAGGGGAGAGTCTTAATGGAGGCAAGAGTT
____________________________________________________________
consensus GTTTTGTGGAGCAGCTAGGGCACAGAGGGATAGGGGAGAGTCTTAATGGAAGCAAGAGTT
. : . : . : . : . : . :
JMFS101D09- GTAGTATTGTAGACTAGCAGCAGGGGCCCTTTTTCAGA-TTAAAAATTAATTATTTTATC
rJMFF018J22+ GTAGTATTGTAGACTAGCAGCAGGGGCCCTTTTTCAGATTTAAAAATTAATTATTTTATC
rJMSF050H01+ GTAGTATTGTAGACTAGCAGCAGGGGCCCTTTTTCAGATTTAAAAANTAATTATNTTATC
rJMFF046E23+ GTAGTATTGTAGACTAGCAGCAGGGGCCCTTTTTCAGATTTAAAAATTAATTATTTNATC
____________________________________________________________
consensus GTAGTATTGTAGACTAGCAGCAGGGGCCCTTTTTCAGATTTAAAAATTAATTATTTTATC
. : . : . : . : . : . :
JMFS101D09- GTTATTCGAAAGGCATAAAATGGTTGCA
rJMFF018J22+ GTTATTCGAAAGGCATAAAATGGTTGCATTTTCTTATGGCTCCGTATTTATTACTGTATT
rJMSF050H01+ GTTATTCGAAAGGCATAAAATGGTTGCATTTTCTTATGGCTCCGTATTTATTACTGTATT
rJMFF046E23+ GTTATTCGAAAGGCATAAAATGGTTGCATTTTCTTATGGCTCCGTATTTATTACTGTATT
____________________________________________________________
consensus GTTATTCGAAAGGCATAAAATGGTTGCATTTTCTTATGGCTCCGTATTTATTACTGTATT
. : . : . : . : . : . :
rJMFF018J22+ CTTTTGAAAAATGGTAGTGTCAGCAAGGCTTGTAGGAATGTTTGGGGGGTAGGGGATAGA
rJMSF050H01+ C-TTCGAAAAATGGTAGTGTCAGCAAGGCTTGTAGGAATGTTTGGGGGGTAGGGGATAGA
rJMFF046E23+ CTTTTGAAAAATGGTAGTGTCAGCAAGGCTTGTAGGAATGTTTGGGGGGTAGGGGATAGA
____________________________________________________________
consensus CTTTTGAAAAATGGTAGTGTCAGCAAGGCTTGTAGGAATGTTTGGGGGGTAGGGGATAGA
. : . : . : . : . : . :
rJMFF018J22+ AAAACCATTTATAAT
rJMSF050H01+ AAAACCATTTATAATGGGTATTTCCTACTCCGATATTGAATTCTTGCAGAGTTT
rJMFF046E23+ AAAACCATTTATAATGGGTATTTCCTACTCTGATATTGAATTCTTGCAGAGTTTAAACCC
____________________________________________________________
consensus AAAACCATTTATAATGGGTATTTCCTACTCTGATATTGAATTCTTGCAGAGTTTAAACCC