Contig 005530:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014C09Sequence580005931 (3)ref|XP_009626963.1|3e-112PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic [Nicotian706005530 (5)ref|XP_006350622.1|2e-79PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic-like isof
JMFF046D08Sequence454005931 (3)ref|XP_009801122.1|7e-89PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X417005530 (5)ref|XP_011099393.1|5e-11PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X
JMFF050O05Sequence638005931 (3)ref|XP_009626963.1|1e-117PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic [Nicotian637005530 (5)ref|XP_006350622.1|2e-59PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic-like isof
JMSF009L11Sequence378023137ref|XP_011101603.1|5e-30PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic [Sesamum 772005530 (5)ref|XP_009801122.1|5e-125PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X
JMSF017G12Sequence493000391 (2)ref|XP_010317758.1|7e-15PREDICTED: N-acetyl-glutamate synthase isoform X1 [Solanum lycopersicum]795005530 (5)ref|XP_006350622.1|6e-106PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic-like isof

Alignment

This contig is upended


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rJMSF009L11+                                                           AGAATTAGCAG
                      ____________________________________________________________
consensus                                                              AGAATTAGCAG
 
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rJMSF009L11+          CTGCAGCTTTTGTTTGCAGAGGTGGGGTTCAAAGAGTTCATCTGTTGGATGGCACTATTG
rJMSF017G12+                                                         GATGGCACCATTG
                      ____________________________________________________________
consensus             CTGCAGCTTTTGTTTGCAGAGGTGGGGTTCAAAGAGTTCATCTGTTGGATGGCACTATTG
 
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rJMSF009L11+          GTGGAGNTTTACTTAAGGAATTGTTTCAAAGAGATGGAGTTGGTACAATGGTGGCTAGTG
rJMSF017G12+          GTGGCGTTTTATTGAAGGAGTTGTTCCAAAGAGATGGAGTTGGTACAATGGTGGCTAGTG
                      ____________________________________________________________
consensus             GTGGCGTTTTATTTAAGGAGTTGTTTCAAAGAGATGGAGTTGGTACAATGGTGGCTAGTG
 
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rJMSF009L11+          ACCTTTATGAAGGAACAAGAATGGCAAGAACAGATGATATTCCTGGAATAAAACAGTTAT
rJMSF017G12+          ACCTTTATGAAGGAACACGAATGGCAAGGGCAACAGATATTCCTGGAATAAAACAAATAT
rJMFF014C09+                                        CAACAGATATTCCTGGAATAAAACAAATAT
                      ____________________________________________________________
consensus             ACCTTTATGAAGGAACACGAATGGCAAGGGCAACAGATATTCCTGGAATAAAACAAATAT
 
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rJMSF009L11+          TGCAGCCTCTAGAAGAGTCTGGGACTTTGATAAGGAGGACAGAGGAAGAGCTACTCGACA
rJMSF017G12+          TGCAACCTTTAGAAGAGTTTGGAACATTGATCAGGAGGACTGAGGTAGAGCTTCTTGAGG
rJMFF014C09+          TGCAACCTTTAGAAGAGTTTGGAACATTGATCAGGAGGACTGAGGTAGAGCTTCTTGAGG
                      ____________________________________________________________
consensus             TGCAACCTTTAGAAGAGTTTGGAACATTGATCAGGAGGACTGAGGTAGAGCTTCTTGAGG
 
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rJMSF009L11+          TGTTGGATTCATTCATTGTTATGGAGAGGGAAGGTCAAATTATAGCATGCGCTGCTCTCA
rJMSF017G12+          CCTTGGATTCATTCATTGTTGTGGAAAGAGAGGGTCAAATTATAGCTTGTGCTGCTCTCT
rJMFF014C09+          CCTTGGATTCATTCATTGTTGTGGAAAGAGAGGGTCAAATTATAGCTTGTGCTGCTCTCT
rJMFF050O05+                                 GAAAGAGAGGGTCAAATTATAGCTTGTGCTGCTCTCT
                      ____________________________________________________________
consensus             CCTTGGATTCATTCATTGTTGTGGAAAGAGAGGGTCAAATTATAGCTTGTGCTGCTCTCT
 
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rJMSF009L11+          TTCCACACTACAAAGAAAAATGTGGAGAGGTTGCTGCTATTGCTGTTTCTCCAGATTGCC
rJMSF017G12+          TTCCATACTTAAAAGAAAAATGTGGAGAGGTTGCTTCTATTGCTGTTTCTCCTGATTGTC
rJMFF014C09+          TTCCATACTTAAAAGAAAAATGTGGAGAGGTTGCTTCTATTGCTGTTTCTCCTGATTGTC
rJMFF050O05+          TTCCATACTTAAAAGAAAAATGTGGAGAGGTTGCTTCTATTGCTGTTTCTCCTGATTGTC
                      ____________________________________________________________
consensus             TTCCATACTTAAAAGAAAAATGTGGAGAGGTTGCTTCTATTGCTGTTTCTCCTGATTGTC
 
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rJMSF009L11+          GTGGCCAAGGAAAGGGAGATAAATTACTCGATTACGTTGAGAAGAAAGCATGTTCTCTTG
rJMSF017G12+          GAGGTCAAGGACAAGGAGACAAATTACTTGATTACATTGAAAAGAAGGCATCTTCCCATG
rJMFF014C09+          GAGGTCAAGGACAAGGAGACAAATTACTTGATTACATTGAAAAGAAGGCATCTTCCCATG
rJMFF050O05+          GAGGTCAAGGACAAGGAGACAAATTACTTGATTACATTGAAAAGAAGGCATCTTCCCATG
                      ____________________________________________________________
consensus             GAGGTCAAGGACAAGGAGACAAATTACTTGATTACATTGAAAAGAAGGCATCTTCCCATG
 
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rJMSF009L11+          GACTGGAAATGCTCTTCCTCCTCACTACTCGCACAGCTGACTGGTTTATAAGGCGTGGGT
rJMSF017G12+          GGATTCAAAAGCTGTTTCTCCTTACAACTCGAACAGCAGACTGGTTTATAAGGCGTGGCT
rJMFF014C09+          GGATTCAAAAGCTGTTTCTCCTTACAACTCGAACAGCAGACTGGTTTATAAGGCGTGGCT
rJMFF050O05+          GGATTCAAAAGCTGTTTCTCCTTACAACTCGAACAGCAGACTGGTTTATAAGGCGTGGCT
                      ____________________________________________________________
consensus             GGATTCAAAAGCTGTTTCTCCTTACAACTCGAACAGCAGACTGGTTTATAAGGCGTGGCT
 
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rJMSF009L11+          TCTCAGAATGTTCCATTGACAATATACCAGAGGAAAGAAGGAAGAAGATCAATCTCTCGC
rJMSF017G12+          TTTCAGAATGTTCCATTGATCAGTTACCAGTGGAGAGAAGGAAAAAAATCAACCTTTCAC
rJMFF014C09+          TTTCAGAATGTTCCATTGATCAGTTACCAGTGGAGAGAAGGAAAAAAATCAACCTTTCAC
rJMFF050O05+          TTTCAGAATGTTCCATTGATCAGTTACCAGTGGAGAGAAGGAAAAAAATCAACCTTTCAC
rJMFF046D08+             CAGAATGTTCCATTGATCAGTTACCAGTGGAGAGAAGGAAAAAAATCAACCTTTCAC
                      ____________________________________________________________
consensus             TTTCAGAATGTTCCATTGATCAGTTACCAGTGGAGAGAAGGAAAAAAATCAACCTTTCAC
 
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rJMSF009L11+          GTAGATCAAAATATTACATGAAGAAGCTGCTACCTGATAGGAGTGGTATTCGC       
rJMSF017G12+          GTGGATCAAAATATTACATGAAGAAGCTGCAGCCTGATAGGAGCGGTATTCGCTTTGGTA
rJMFF014C09+          GTGGATCAAAATATTACATGAAGAAGCTGCAGCCTGATAGGAGCGGTATTCGCTTTGGTA
rJMFF050O05+          GTGGATCAAAATATTACATGAAGAAGCTGCAGCCTGATAGGAGCGGTATTCGCTTTGGTA
rJMFF046D08+          GTGGATCAAAATATTACATGAAGAAGCTGCAGCCTGATAGGAGCGGTATTCGCTTTGGTA
                      ____________________________________________________________
consensus             GTGGATCAAAATATTACATGAAGAAGCTGCAGCCTGATAGGAGCGGTATTCGCTTTGGTA
 
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rJMSF017G12+          GTGTTATTGCGTAAGAGCAAAATAGAGGATTATTATGCCCACATAATTGGCTGTACTGTG
rJMFF014C09+          GTGTTATTGCGTAAGAGCAAAATAGAGGATTATTATGCCCACATAATTGGCTGTACTGTG
rJMFF050O05+          GTGTTATTGCGTAAGAGCAAAATAGAGGATTATTATGCCCACATAATTGGCTGTACTGTG
rJMFF046D08+          GTGTTATTGCGTAAGAGCAAAATAGAGGATTATTATGCCCACATAATTGGCTGTACTGTG
                      ____________________________________________________________
consensus             GTGTTATTGCGTAAGAGCAAAATAGAGGATTATTATGCCCACATAATTGGCTGTACTGTG
 
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rJMSF017G12+          AGCTAAAGCTTGTAGCAGTGTCTCTGTAACTGAGAAGCTGAATTAAGAAGACGTAATGTT
rJMFF014C09+          AGCTAAAGCTTGTAGCAGTGTCTCTGTAACTGAGAAGCTGAATTAAGAAGACGTAATGTT
rJMFF050O05+          AGCTAAAGCTTGTAGCAGTGTCTCTGTAACTGAGAAGCTGAATTAAGAAGACGTAATGTT
rJMFF046D08+          AGCTAAAGCTTGTAGCAGTGTCTCTGTAACTGAGAAGCTGAATTAAGAAGACGTAATGTT
                      ____________________________________________________________
consensus             AGCTAAAGCTTGTAGCAGTGTCTCTGTAACTGAGAAGCTGAATTAAGAAGACGTAATGTT
 
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rJMSF017G12+          CAAGGAGATAGAACACAAGATGCCAAAATGCAGAGGTTGGGCATGAGATAAAAATTCATG
rJMFF014C09+          CAAGGAGATAGAACACAAGATGCCAAAATGCAGAGGTTGGGCATGAGATAAAAATTCATG
rJMFF050O05+          CAAGGAGATAGAACACAAGATGCCAAAATGCAGAGGTTGGGCATGAGATAAAAATTCATG
rJMFF046D08+          CAAGGAGATAGAACACAAGATGCCAAAATGCAGAGGTTGGGCATGAGATAAAAATTCATG
                      ____________________________________________________________
consensus             CAAGGAGATAGAACACAAGATGCCAAAATGCAGAGGTTGGGCATGAGATAAAAATTCATG
 
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rJMSF017G12+          TCTTGCCAAATAATATGTTTGGATATGAAACAATTGTGATTTTTTGTGTCCTAT      
rJMFF014C09+          TCTTGCCAAATAATATGTTTGGATATGAAACAATTGTGATTTTTTGTGTCCTATTGACTC
rJMFF050O05+          TCTTGCCAAATAATATGTTTGGATATGAAACAATTGTGATTTTTTGTGTCCTATTGACTC
rJMFF046D08+          TCTTGCCAAATAATATGTTTGGATATGAAACAATTGTGAGTTTTTGTGTCCTATTGACTC
                      ____________________________________________________________
consensus             TCTTGCCAAATAATATGTTTGGATATGAAACAATTGTGATTTTTTGTGTCCTATTGACTC
 
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rJMFF014C09+          TATTACAAAATAGT                                              
rJMFF050O05+          TATTACAAAATAGTATTGTTCTATAGTTTCTTTAAAAAAAAAAAAAAAACTCTCCAGGGT
rJMFF046D08+          TATTACAAAATAGTATTGTTCTATAGTTTCTTTAAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus             TATTACAAAATAGTATTGTTCTATAGTTTCTTTAAAAAAAAAAAAAAAACTCTCCAGGGT