| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF016B14 | Sequence | 564 | 000285 (4) | ref|XP_009588089.1| | 7e-11 | PREDICTED: LOW QUALITY PROTEIN: probable tyrosine--tRNA ligase, mitochondrial [ | 542 | 005524 (7) | ref|XP_009591201.1| | 4e-55 | PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Nicotiana tomentosifo |
| JMFF035H22 | Sequence | 536 | 010762 (2) | 661 | 005524 (7) | ref|XP_009591201.1| | 1e-76 | PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Nicotiana tomentosifo | |||
| JMFF041B17 | Sequence | 647 | 015293 | ref|XP_009588089.1| | 1e-21 | PREDICTED: LOW QUALITY PROTEIN: probable tyrosine--tRNA ligase, mitochondrial [ | 625 | 005524 (7) | ref|XP_009591201.1| | 2e-64 | PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Nicotiana tomentosifo |
| JMFF045H23 | Sequence | 632 | 000285 (4) | ref|XP_009588089.1| | 2e-26 | PREDICTED: LOW QUALITY PROTEIN: probable tyrosine--tRNA ligase, mitochondrial [ | 583 | 005524 (7) | ref|XP_009591201.1| | 1e-55 | PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Nicotiana tomentosifo |
| JMFF050E08 | Sequence | 579 | 000285 (4) | ref|XP_009588089.1| | 4e-11 | PREDICTED: LOW QUALITY PROTEIN: probable tyrosine--tRNA ligase, mitochondrial [ | 571 | 005524 (7) | ref|XP_009591201.1| | 8e-56 | PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Nicotiana tomentosifo |
| JMSF008D13 | Sequence | 358 | 000285 (4) | 118 | 005524 (7) | ||||||
| JMSF030I21 | Sequence | 669 | 010762 (2) | ref|XP_009588089.1| | 6e-18 | PREDICTED: LOW QUALITY PROTEIN: probable tyrosine--tRNA ligase, mitochondrial [ | 521 | 005524 (7) | ref|XP_004242803.1| | 6e-51 | PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Solanum lycopersicum] |
This contig is upended
. : . : . : . : . : . :
rJMFF035H22+ ACCTTACAAGT
____________________________________________________________
consensus ACCTTACAAGT
. : . : . : . : . : . :
rJMFF035H22+ TCTACCAGTACTTTTTCTCTGTTCCTGATGCTGATGTGGTGAGATTTCTCAAGATTCTTA
rJMFF041B17+ GGTGAGATTTCTCAAGATTCTTA
____________________________________________________________
consensus TCTACCAGTACTTTTTCTCTGTTCCTGATGCTGATGTGGTGAGATTTCTCAAGATTCTTA
. : . : . : . : . : . :
rJMFF035H22+ CATTTCTCACCATTGAAGAGATTGAGGAGCTCAAAACACAAATGGGGAATCCTGGTTATG
rJMFF016B14+ AAACACAAATGGGGAATCCTGGTTATG
rJMFF041B17+ CATTTCTCACCATTGAAGAGATTGAGGAGCTCAAAACACAAATGGGGAATCCTGGTTATG
____________________________________________________________
consensus CATTTCTCACCATTGAAGAGATTGAGGAGCTCAAAACACAAATGGGGAATCCTGGTTATG
. : . : . : . : . : . :
rJMFF035H22+ CTCCTAACACTGCACAA-CGTAGGTTGGCCGAGGAGGTTACACGGTTTGTTCATGGACAA
rJMFF016B14+ CTCCTAACACTGCACAACCGTAGGTTGNCCGAGGAGGTTACACGGTTTGTTCATGGACAA
rJMSF030I21+ CAA-CGTAGNTTGGCCGAGGAGGTTACACGGTTTGTTCATGGACAA
rJMFF041B17+ CTCCTAACACTGCACAA-CGTAGGTTGGCCGAGGAGGTTACACGGTTTGTTCATGGACAA
rJMFF050E08+ CGTAGGTTGGCCGAGGAGGTTACACGGTTTGTTCATGGACAA
rJMFF045H23+ CAA-CGTAGGTTGGCCGAGGAGGTTACACGGTTTGTTCATGGACAA
____________________________________________________________
consensus CTCCTAACACTGCACAA-CGTAGGTTGGCCGAGGAGGTTACACGGTTTGTTCATGGACAA
. : . : . : . : . : . :
rJMFF035H22+ GAGGGGTTGGATGAAGCCCTGAAGGCTACAGAGGCATTGAGGCCTGGCAATGCAGATACT
rJMFF016B14+ GAGGGGTTGGATGAAGCCCTGAAGGCTACAGAGGCATTGAGGCCTGGCAATGCAGATACT
rJMSF030I21+ GAGGGGTTGGATGAAGCCCTGAAGGCTACAGAGGCATTGAGGCCTGGCAATGCAGATACT
rJMFF041B17+ GAGGGGTTGGATGAAGCCCTGAAGGCTACAGAGGCATTGAGGCCTGGCAATGCAGATACT
rJMFF050E08+ GAGGGGTTGGATGAAGCCCTGAAGGCTACAGAGGCATTGAGGCCTGGCAATGCAGATACT
rJMFF045H23+ GAGGGGTTGGATGAAGCCCTGAAGGCTACAGAGGCATTGAGGCCTGGCAATGCAGATACT
____________________________________________________________
consensus GAGGGGTTGGATGAAGCCCTGAAGGCTACAGAGGCATTGAGGCCTGGCAATGCAGATACT
. : . : . : . : . : . :
rJMFF035H22+ AAGTTGGATTGGAAAACCATTGAGGGAATTGCCAGTGATGTTCCGTCCTGCTCGTTGCCT
rJMFF016B14+ AAGTTGGATTGGAAAACCATTGAGGGAATTGCCAGTGATGTTCCGTCCTGCTCGTTGCCT
rJMSF030I21+ AAGTTGGATNGGAAAACCATTGAGGGAATTGCCAGTGATGTTCCGTCCTGCTCGTTNCCT
rJMFF041B17+ AAGTTGGATTGGAAAACCATTGAGGGAATTGCCAGTGATGTTCCGTCCTGCTCGTTGCCT
rJMFF050E08+ AAGTTGGATTGGAAAACCATTGAGGGAATTGCCAGTGATGTTCCGTCCTGCTCGTTGCCT
rJMFF045H23+ AAGTTGGATTGGAAAACCATTGAGGGAATTGCCAGTGATGTTCCGTCCTGCTCGTTGCCT
____________________________________________________________
consensus AAGTTGGATTGGAAAACCATTGAGGGAATTGCCAGTGATGTTCCGTCCTGCTCGTTGCCT
. : . : . : . : . : . :
rJMFF035H22+ TTTGATCAGGTGTTGAGTATTTCGGTTTTGGATCTTTCTGTTTCTAGTGGTTTGCTCGAG
rJMFF016B14+ TTTGATCAGGTGTTGAGTATTTCGGTTTTGGATCTTTCTGTTTCTAGTGGTTTGCTCGAG
rJMSF030I21+ TTTGNTCAGGTGTCGAGTATTTCGGTTTTGGATCTTTCTGTTTCTAGTGGTTTGCTCGAG
rJMFF041B17+ TTTGATCAGGTGTTGAGTATTTCGGTTTTGGATCTTTCTGTTTCTAGTGGTTTGCTCGAG
rJMFF050E08+ TTTGATCAGGTGTTGAGTATTTCGGTTTTGGATCTTTCTGTTTCTAGTGGTTTGCTCGAG
rJMFF045H23+ TTTGATCAGGTGTTGAGTATTTCGGTTTTGGATCTTTCTGTTTCTAGTGGTTTGCTCGAG
____________________________________________________________
consensus TTTGATCAGGTGTTGAGTATTTCGGTTTTGGATCTTTCTGTTTCTAGTGGTTTGCTCGAG
. : . : . : . : . : . :
rJMFF035H22+ AGCAAGTCTGCTGCGCGTAGAATGCTCAAGCAAGGAGGGCTTTACTTGAACAATGCCCGA
rJMFF016B14+ AGCAAGTCTGCTGCGCGTAGAATGCTCAAGCAAGGAGGGCTTTACTTGAACAATGCCCGA
rJMSF030I21+ AGCAAGTCTGCTGCGCGTAGAATGCTCAAGCAAGGAGGGCTTTACTTGAACAATGCCCGA
rJMFF041B17+ AGCAAGTCTGCTGCGCGTAGAATGCTCAAGCAAGGAGGGCTTTACTTGAACAATGCCCGA
rJMFF050E08+ AGCAAGTCTGCTGCGCGTAGAATGCTCAAGCAAGGAGGGCTTTACTTGAACAATGCCCGA
rJMFF045H23+ AGCAAGTTTGCTGCGCGTAGAATGCTCAAGCAAGGAGGGCTTTACTTGAACAATGCCCGA
____________________________________________________________
consensus AGCAAGTCTGCTGCGCGTAGAATGCTCAAGCAAGGAGGGCTTTACTTGAACAATGCCCGA
. : . : . : . : . : . :
rJMFF035H22+ GTTGATAGTGAGGCTAAGAAGATTGAGGAGGACGATATTGTGGATGGAAAAGTTCTGCTT
rJMFF016B14+ GTTGATAGTGAGGCTAAGAAGATTGAGGAGGACGATATCGTGGATGGAAAAGTTCTGCTT
rJMSF030I21+ GTTGATAGTGAGGCTAAGAAGATTGAGGAGGACGATATTNTGGATGGAAAAGTTCTGCTT
rJMFF041B17+ GTTGATAGTGAGGCTAAGAAGATTGAGGAGGACGATATCGTGGATGGAAAAGTTCTGCTT
rJMFF050E08+ GTTGATAGTGAGGCTAAGAAGATTGAGGAGGACGATATTGTGGATGGAAAAGTTCTGCTT
rJMFF045H23+ GTTGATAGTGAGGCTAAGAAGATTGAGGAGGACGATATCGTGGATGGAAAAGTTCTGCTT
____________________________________________________________
consensus GTTGATAGTGAGGCTAAGAAGATTGAGGAGGACGATATTGTGGATGGAAAAGTTCTGCTT
. : . : . : . : . : . :
rJMFF035H22+ TTGTCTGCAGGAAAGAAGAACAAGATGGTTGTGAGAATTTCCTGACCCATAGCTGCTTAT
rJMFF016B14+ TTGTCTGCAGGAAAGAAGAACAAGATGGTTGTGAGAATTTCCTGACCCATAGCTGCTTAT
rJMSF030I21+ NTGTCTGCAGGAAAGAAGAACAAGANGGTTGTGAGAATTTCCTGACCCATAGCTGCTTAT
rJMFF041B17+ TTGTCTGCAGGAAAGAAGAACAAGATGGTTGTGAGAATTTCCTGACCCATAGCTGCTTAT
rJMFF050E08+ TTGTCTGCAGGAAAGAAGAACAAGATGGTTGTGAGAATTTCCTGACCCATAGCTGCTTAT
rJMSF008D13+ GCAGGAAAGNAGAACAAGATGGTTGTGAGAATTTCCTGACCCATAGCTGCTNAT
rJMFF045H23+ TTGTCTGCAGGAAAGAAGAACAAGATGGTTGTGAGAATTTCCTGACCCATAGCTGCTTAT
____________________________________________________________
consensus TTGTCTGCAGGAAAGAAGAACAAGATGGTTGTGAGAATTTCCTGACCCATAGCTGCTTAT
. : . : . : . : . : . :
rJMFF035H22+ TTTTTATTCCATTGACGTGGTAGAGACACAATGCTATCACCATTAAAATAGATAAACCTT
rJMFF016B14+ TTTTTATTCCATTGACGTGGTAGAGACACAATGCTATCACCATTAAAATAGATAAACCTT
rJMSF030I21+ TTTTTATTCCATTGACGTGGTAGAGACACAATGCTATCACCANTAAAATAGATAAACCTT
rJMFF041B17+ TTTTTATTCCATTGACGTGGTAGAGACACAATGCTATCACCATTAAAATAGATAAACCTT
rJMFF050E08+ TTTTTATTCCATTGACGTGGTAGAGACACAATGCTATCACCATTAAAATAGATAAACCTT
rJMSF008D13+ TTNNTATTCCATNGACGTGGTAGAGACACAATGCCATCCCCATTAAAATAGATAAACCTT
rJMFF045H23+ TTTTTATTCCATTGACGTGGTAGAGACACAATGCTATCCCCATTAAAATAGATAAACCTT
____________________________________________________________
consensus TTTTTATTCCATTGACGTGGTAGAGACACAATGCTATCACCATTAAAATAGATAAACCTT
. : . : . : . : . : . :
rJMFF035H22+ CATGATCAAGT-TGTATATCTCAATTCTCACCATAATTCTATATGCTATCGA
rJMFF016B14+ CATGATCAAGT-TGTATATCTCAATTCTCA-CATAAT
rJMSF030I21+ CATGATCAAGTCTGTATATCTCAATTCTCA-CATAATNCTATATGCTATCGAACCTT
rJMFF041B17+ CATGATCAAGT-TGTATATCTCAATTCTCA-CATAATTCTATATGCTATCGAACCTTTTT
rJMFF050E08+ CATGATCAAGT-TGTATATCCCAATTCTCA-CATAATTCTATATGCTATCGAACCTTTTT
rJMSF008D13+ CATG
rJMFF045H23+ CATGATCAAGT-TGTATATCTCAATTCTCA-CATAATTCTATATGCTATCGAACCTTTTT
____________________________________________________________
consensus CATGATCAAGT-TGTATATCTCAATTCTCA-CATAATTCTATATGCTATCGAACCTTTTT
. : . : . : . : . : . :
rJMFF041B17+ GTATC
rJMFF050E08+ GTATC
rJMFF045H23+ GTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCCAGGGTGATCCGCCATAAGG
____________________________________________________________
consensus GTATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTCCAGGGTGATCCGCCATAAGG