Contig 005522:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF045F10Sequence629006222 (8)ref|XP_009617273.1|2e-78PREDICTED: importin-5-like [Nicotiana tomentosiformis]427005522 (4)
JMSF017N08Sequence460006222 (8)ref|XP_009617273.1|3e-52PREDICTED: importin-5-like [Nicotiana tomentosiformis]736005522 (4)gb|ABR17301.1|4e-48unknown [Picea sitchensis]
JMSF020H19Sequence682006222 (8)ref|XP_009617273.1|4e-103PREDICTED: importin-5-like [Nicotiana tomentosiformis]701005522 (4)ref|XP_009757753.1|3e-81PREDICTED: importin-5-like [Nicotiana sylvestris]
JMSF021P08Sequence651006222 (8)ref|XP_009617273.1|5e-98PREDICTED: importin-5-like [Nicotiana tomentosiformis]719005522 (4)ref|XP_009757753.1|1e-68PREDICTED: importin-5-like [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF020H19+ GAGAATGTA
                      ____________________________________________________________
consensus GAGAATGTA
 
. : . : . : . : . : . :
rJMSF020H19+ ATGGCATACGACAATGCGGTCTCTGCACTGGGGAAGATATGCCAATTCCATCGTGAAAGT
rJMSF021P08+ CATCGTGAAAGT
                      ____________________________________________________________
consensus ATGGCATACGACAATGCGGTCTCTGCACTGGGGAAGATATGCCAATTCCATCGTGAAAGT
 
. : . : . : . : . : . :
rJMSF020H19+ ATTGACTCAGCTCAGGTTGTTCCAGCTTGGTTGCATTGCTTACCTATAAAAGGTGACTTG
rJMSF021P08+ ATTGACTCAGCTCAGGTTGTTCCAGCTTGGTTGCATTGCTTACCTATAAAAGGTGACTTG
                      ____________________________________________________________
consensus ATTGACTCAGCTCAGGTTGTTCCAGCTTGGTTGCATTGCTTACCTATAAAAGGTGACTTG
 
. : . : . : . : . : . :
rJMSF020H19+ ATTGAAGCAAAAGTTGTACATGACCAGCTGTGTTCAATGGTTGAAAGGTNTGATAGAGAG
rJMSF021P08+ ATTGAAGCAAAAGTTGTACATGACCAGCTGTGTTCAATGGTTGAAAGGTCTGATAGAGAG
rJMSF017N08+ TGAAGCAAAAGTTGTACATGACCAGCTGTGTTCAATGGTTGAAAGGTCTGATAGAGAG
                      ____________________________________________________________
consensus ATTGAAGCAAAAGTTGTACATGACCAGCTGTGTTCAATGGTTGAAAGGTCTGATAGAGAG
 
. : . : . : . : . : . :
rJMSF020H19+ CTGTTGGGGCCCAACAATCAGTACCTTCCTAAGATTGTTTCAGTTTTTGCTGAGGTTTTA
rJMSF021P08+ CTGTTGGGGCCCAACAATCAGTACCTTCCTAAGATTGTTTCAGTTTTTGCTGAGGTTTTA
rJMSF017N08+ CTGTTGGGGCCCAACAATCAGTACCTTCCTAAGATTGTTTCAGTTTTTGCTGAGGTTTTA
                      ____________________________________________________________
consensus CTGTTGGGGCCCAACAATCAGTACCTTCCTAAGATTGTTTCAGTTTTTGCTGAGGTTTTA
 
. : . : . : . : . : . :
rJMSF020H19+ TGTGCCGGTAAGGATCTTGCAACAGAGCAAACAACCGGTCGAATGGTTAATCTGTTGAGG
rJMSF021P08+ TGTGCCGGTAAGGATCTTGCAACAGAGCAAACAACCGGTCGAATGGTTAATCTGTTGAGG
rJMSF017N08+ TGTGCCGGTAAGGATCTTGCAACAGAGCAAACAACCGGTCGAATGGTTAATCTGTTGAGG
                      ____________________________________________________________
consensus TGTGCCGGTAAGGATCTTGCAACAGAGCAAACAACCGGTCGAATGGTTAATCTGTTGAGG
 
. : . : . : . : . : . :
rJMSF020H19+ CAGCTTCAACAGACACTACCACCGGCAACCCTGGCATCAACATGGTCGTCCTTGCAGCCC
rJMSF021P08+ CAGCTTCAACAGACACTACCACCGGCAACCCTGGCATCAACATGGTCGTCCTTGCAGCCC
rJMSF017N08+ CAGCTTCAACAGACACTACCACCGGCAACCCTGGCATCAACATGGTCGTCCTTGCAGCCC
                      ____________________________________________________________
consensus CAGCTTCAACAGACACTACCACCGGCAACCCTGGCATCAACATGGTCGTCCTTGCAGCCC
 
. : . : . : . : . : . :
rJMSF020H19+ CAGCAACAGATGGCACTGCAATCCATTCTATCATCATAAGTTTGTTATTGGAAGTGGGAA
rJMSF021P08+ CAGCAACAGATGGCACTGCAATCCATTCTATCATCATAAGTTTGTTATTGGAAGTGGGAA
rJMSF017N08+ CAGCAACAGATGGCACTGCAATCCATTCTATCATCATAAGTTTGTTATTGGAAGTGGGAA
                      ____________________________________________________________
consensus CAGCAACAGATGGCACTGCAATCCATTCTATCATCATAAGTTTGTTATTGGAAGTGGGAA
 
. : . : . : . : . : . :
rJMSF020H19+ CGAAGACCGGCTNTTCTCCACAGTGATGAACCAACCTGCTGTGCCCCCGGTAGCTTGAGG
rJMSF021P08+ CGAAGACCGGCTCTTCTCCACAGTGATGAACCAACCTGCTGTGCCCCCGGTAGCTTGAGG
rJMSF017N08+ CGAAGACCGGCTCTTCTCCACAGTGATGAACCAACCTGCTGTGCCCCCGGTAGCTTGAGG
rJMFF045F10+ CTTGAGG
                      ____________________________________________________________
consensus CGAAGACCGGCTCTTCTCCACAGTGATGAACCAACCTGCTGTGCCCCCGGTAGCTTGAGG
 
. : . : . : . : . : . :
rJMSF020H19+ TCAATCACTCAAATATTCGAAACAAATATTCTTTCTCATAAATGCCATTCGTTTGCACAC
rJMSF021P08+ TCAATCACTCAAATATTCGAAACAAATATTCTTTCTCATAAATGCCATTCGTTTGCACAC
rJMSF017N08+ TCAATCACTCAAATATTCGAAACAAATATTCTTTCTCATAAATGCCATTCGTTTGCACAC
rJMFF045F10+ TCAATCACTCAAATATTCGAAACAAATATTCTTTTTCATAAATGCCATTCGTTTGCACAC
                      ____________________________________________________________
consensus TCAATCACTCAAATATTCGAAACAAATATTCTTTCTCATAAATGCCATTCGTTTGCACAC
 
. : . : . : . : . : . :
rJMSF020H19+ GAGGTCTTCCACCATCAGCCTGGCGTCCGTTTTAAGCTTG-AAAAAAAAATGCGAGCAAA
rJMSF021P08+ GAGGTCTTCCACCATCAGCCTGGCGTCCGTTTTAAGCTTG-AAAAAAAAATGCGAGCAAA
rJMSF017N08+ GAGGTCTTCCACCATCAGCCTGGCGTCCGTTTTAAGCTTG-AAAAAAAAATGCGAGCAAA
rJMFF045F10+ GAGGTTTTCCACCATCAGCCTGGCGTCCGTTTTAAGCTTGAAAAAAAAAATGCGAGCAAA
                      ____________________________________________________________
consensus GAGGTCTTCCACCATCAGCCTGGCGTCCGTTTTAAGCTTG-AAAAAAAAATGCGAGCAAA
 
. : . : . : . : . : . :
rJMSF020H19+ AGATGTATACCTATTTTTGGTTGAATGTGTATATTTAAGAGTCAAGCCCTTGAGGAACAA
rJMSF021P08+ AGATGTATACCTATTTTTGGTTGAATGTGTATATTTAAGAGTCAAGCCCTTGAGGAACAA
rJMSF017N08+ AGATGTATACCTATTTTTGGTTGAATGTGTATATTTAAGAGTCAAGCCCTTGAGGAACAA
rJMFF045F10+ AGATGTATACCTATTTTTGGTTGAATGTGTATATTTAAGAGTCAAGCCCTTGAGGAACAA
                      ____________________________________________________________
consensus AGATGTATACCTATTTTTGGTTGAATGTGTATATTTAAGAGTCAAGCCCTTGAGGAACAA
 
. : . : . : . : . : . :
rJMSF020H19+ TTGTGGTCTTGTGAGATTTATTTATTTTGCCTT
rJMSF021P08+ TTGTGGTCTTGTGAGATTTATTTATTTTGCCTTGTATTTTTGTTGAGGCTAAGGGTTGTC
rJMSF017N08+ TTGTGGTCTTGTGAGATTTATTTATTTTGCCTTGTATTTTTGTTGAGGCTAAGGGTTGTC
rJMFF045F10+ TTGTGGTCTTGTGAGATTTATTTATTTTGCCTTGTATTTTTGTTGAGGCTAAGGGTTGTC
                      ____________________________________________________________
consensus TTGTGGTCTTGTGAGATTTATTTATTTTGCCTTGTATTTTTGTTGAGGCTAAGGGTTGTC
 
. : . : . : . : . : . :
rJMSF021P08+ AGGGAGGCAATTCTTGTCGCAGTTTTGTCCTGTCGGTCTT
rJMSF017N08+ AGGGAGGCAATTCTTGTCGCAGTTTTGTCCTGTCGGTCTTGTTCTTTTACATTTTGATTG
rJMFF045F10+ AGGGAGGCAATTCTTGTCGCAGTTTTGTCCTGTCGGTCTTGTTCTTTTACATTTTGATTG
                      ____________________________________________________________
consensus AGGGAGGCAATTCTTGTCGCAGTTTTGTCCTGTCGGTCTTGTTCTTTTACATTTTGATTG
 
. : . : . : . : . : . :
rJMSF017N08+ TGACAGAACAAGGATTATAATTTACTTATTTTCTTTGTCATATTGCTTGTGATCTTTCGG
rJMFF045F10+ TGACAGAACAAGGATTATAATTTACTTATTTTCTTTGTCATATTGCTTGTGATCTTTCGG
                      ____________________________________________________________
consensus TGACAGAACAAGGATTATAATTTACTTATTTTCTTTGTCATATTGCTTGTGATCTTTCGG
 
. : . : . : . : . : . :
rJMSF017N08+ AACGTTACAAGT
rJMFF045F10+ AACGTTACAAGTTGTTAGAGACTCCTATTTTTCTTCAAATATATTATAATATATGTTGTC
                      ____________________________________________________________
consensus AACGTTACAAGTTGTTAGAGACTCCTATTTTTCTTCAAATATATTATAATATATGTTGTC