Contig 005522:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF045F10Sequence629006222 (8)ref|XP_009617273.1|2e-78PREDICTED: importin-5-like [Nicotiana tomentosiformis]427005522 (4)
JMSF017N08Sequence460006222 (8)ref|XP_009617273.1|3e-52PREDICTED: importin-5-like [Nicotiana tomentosiformis]736005522 (4)gb|ABR17301.1|4e-48unknown [Picea sitchensis]
JMSF020H19Sequence682006222 (8)ref|XP_009617273.1|4e-103PREDICTED: importin-5-like [Nicotiana tomentosiformis]701005522 (4)ref|XP_009757753.1|3e-81PREDICTED: importin-5-like [Nicotiana sylvestris]
JMSF021P08Sequence651006222 (8)ref|XP_009617273.1|5e-98PREDICTED: importin-5-like [Nicotiana tomentosiformis]719005522 (4)ref|XP_009757753.1|1e-68PREDICTED: importin-5-like [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF020H19+                                                             GAGAATGTA
                      ____________________________________________________________
consensus                                                                GAGAATGTA
 
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rJMSF020H19+          ATGGCATACGACAATGCGGTCTCTGCACTGGGGAAGATATGCCAATTCCATCGTGAAAGT
rJMSF021P08+                                                          CATCGTGAAAGT
                      ____________________________________________________________
consensus             ATGGCATACGACAATGCGGTCTCTGCACTGGGGAAGATATGCCAATTCCATCGTGAAAGT
 
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rJMSF020H19+          ATTGACTCAGCTCAGGTTGTTCCAGCTTGGTTGCATTGCTTACCTATAAAAGGTGACTTG
rJMSF021P08+          ATTGACTCAGCTCAGGTTGTTCCAGCTTGGTTGCATTGCTTACCTATAAAAGGTGACTTG
                      ____________________________________________________________
consensus             ATTGACTCAGCTCAGGTTGTTCCAGCTTGGTTGCATTGCTTACCTATAAAAGGTGACTTG
 
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rJMSF020H19+          ATTGAAGCAAAAGTTGTACATGACCAGCTGTGTTCAATGGTTGAAAGGTNTGATAGAGAG
rJMSF021P08+          ATTGAAGCAAAAGTTGTACATGACCAGCTGTGTTCAATGGTTGAAAGGTCTGATAGAGAG
rJMSF017N08+            TGAAGCAAAAGTTGTACATGACCAGCTGTGTTCAATGGTTGAAAGGTCTGATAGAGAG
                      ____________________________________________________________
consensus             ATTGAAGCAAAAGTTGTACATGACCAGCTGTGTTCAATGGTTGAAAGGTCTGATAGAGAG
 
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rJMSF020H19+          CTGTTGGGGCCCAACAATCAGTACCTTCCTAAGATTGTTTCAGTTTTTGCTGAGGTTTTA
rJMSF021P08+          CTGTTGGGGCCCAACAATCAGTACCTTCCTAAGATTGTTTCAGTTTTTGCTGAGGTTTTA
rJMSF017N08+          CTGTTGGGGCCCAACAATCAGTACCTTCCTAAGATTGTTTCAGTTTTTGCTGAGGTTTTA
                      ____________________________________________________________
consensus             CTGTTGGGGCCCAACAATCAGTACCTTCCTAAGATTGTTTCAGTTTTTGCTGAGGTTTTA
 
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rJMSF020H19+          TGTGCCGGTAAGGATCTTGCAACAGAGCAAACAACCGGTCGAATGGTTAATCTGTTGAGG
rJMSF021P08+          TGTGCCGGTAAGGATCTTGCAACAGAGCAAACAACCGGTCGAATGGTTAATCTGTTGAGG
rJMSF017N08+          TGTGCCGGTAAGGATCTTGCAACAGAGCAAACAACCGGTCGAATGGTTAATCTGTTGAGG
                      ____________________________________________________________
consensus             TGTGCCGGTAAGGATCTTGCAACAGAGCAAACAACCGGTCGAATGGTTAATCTGTTGAGG
 
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rJMSF020H19+          CAGCTTCAACAGACACTACCACCGGCAACCCTGGCATCAACATGGTCGTCCTTGCAGCCC
rJMSF021P08+          CAGCTTCAACAGACACTACCACCGGCAACCCTGGCATCAACATGGTCGTCCTTGCAGCCC
rJMSF017N08+          CAGCTTCAACAGACACTACCACCGGCAACCCTGGCATCAACATGGTCGTCCTTGCAGCCC
                      ____________________________________________________________
consensus             CAGCTTCAACAGACACTACCACCGGCAACCCTGGCATCAACATGGTCGTCCTTGCAGCCC
 
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rJMSF020H19+          CAGCAACAGATGGCACTGCAATCCATTCTATCATCATAAGTTTGTTATTGGAAGTGGGAA
rJMSF021P08+          CAGCAACAGATGGCACTGCAATCCATTCTATCATCATAAGTTTGTTATTGGAAGTGGGAA
rJMSF017N08+          CAGCAACAGATGGCACTGCAATCCATTCTATCATCATAAGTTTGTTATTGGAAGTGGGAA
                      ____________________________________________________________
consensus             CAGCAACAGATGGCACTGCAATCCATTCTATCATCATAAGTTTGTTATTGGAAGTGGGAA
 
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rJMSF020H19+          CGAAGACCGGCTNTTCTCCACAGTGATGAACCAACCTGCTGTGCCCCCGGTAGCTTGAGG
rJMSF021P08+          CGAAGACCGGCTCTTCTCCACAGTGATGAACCAACCTGCTGTGCCCCCGGTAGCTTGAGG
rJMSF017N08+          CGAAGACCGGCTCTTCTCCACAGTGATGAACCAACCTGCTGTGCCCCCGGTAGCTTGAGG
rJMFF045F10+                                                               CTTGAGG
                      ____________________________________________________________
consensus             CGAAGACCGGCTCTTCTCCACAGTGATGAACCAACCTGCTGTGCCCCCGGTAGCTTGAGG
 
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rJMSF020H19+          TCAATCACTCAAATATTCGAAACAAATATTCTTTCTCATAAATGCCATTCGTTTGCACAC
rJMSF021P08+          TCAATCACTCAAATATTCGAAACAAATATTCTTTCTCATAAATGCCATTCGTTTGCACAC
rJMSF017N08+          TCAATCACTCAAATATTCGAAACAAATATTCTTTCTCATAAATGCCATTCGTTTGCACAC
rJMFF045F10+          TCAATCACTCAAATATTCGAAACAAATATTCTTTTTCATAAATGCCATTCGTTTGCACAC
                      ____________________________________________________________
consensus             TCAATCACTCAAATATTCGAAACAAATATTCTTTCTCATAAATGCCATTCGTTTGCACAC
 
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rJMSF020H19+          GAGGTCTTCCACCATCAGCCTGGCGTCCGTTTTAAGCTTG-AAAAAAAAATGCGAGCAAA
rJMSF021P08+          GAGGTCTTCCACCATCAGCCTGGCGTCCGTTTTAAGCTTG-AAAAAAAAATGCGAGCAAA
rJMSF017N08+          GAGGTCTTCCACCATCAGCCTGGCGTCCGTTTTAAGCTTG-AAAAAAAAATGCGAGCAAA
rJMFF045F10+          GAGGTTTTCCACCATCAGCCTGGCGTCCGTTTTAAGCTTGAAAAAAAAAATGCGAGCAAA
                      ____________________________________________________________
consensus             GAGGTCTTCCACCATCAGCCTGGCGTCCGTTTTAAGCTTG-AAAAAAAAATGCGAGCAAA
 
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rJMSF020H19+          AGATGTATACCTATTTTTGGTTGAATGTGTATATTTAAGAGTCAAGCCCTTGAGGAACAA
rJMSF021P08+          AGATGTATACCTATTTTTGGTTGAATGTGTATATTTAAGAGTCAAGCCCTTGAGGAACAA
rJMSF017N08+          AGATGTATACCTATTTTTGGTTGAATGTGTATATTTAAGAGTCAAGCCCTTGAGGAACAA
rJMFF045F10+          AGATGTATACCTATTTTTGGTTGAATGTGTATATTTAAGAGTCAAGCCCTTGAGGAACAA
                      ____________________________________________________________
consensus             AGATGTATACCTATTTTTGGTTGAATGTGTATATTTAAGAGTCAAGCCCTTGAGGAACAA
 
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rJMSF020H19+          TTGTGGTCTTGTGAGATTTATTTATTTTGCCTT                           
rJMSF021P08+          TTGTGGTCTTGTGAGATTTATTTATTTTGCCTTGTATTTTTGTTGAGGCTAAGGGTTGTC
rJMSF017N08+          TTGTGGTCTTGTGAGATTTATTTATTTTGCCTTGTATTTTTGTTGAGGCTAAGGGTTGTC
rJMFF045F10+          TTGTGGTCTTGTGAGATTTATTTATTTTGCCTTGTATTTTTGTTGAGGCTAAGGGTTGTC
                      ____________________________________________________________
consensus             TTGTGGTCTTGTGAGATTTATTTATTTTGCCTTGTATTTTTGTTGAGGCTAAGGGTTGTC
 
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rJMSF021P08+          AGGGAGGCAATTCTTGTCGCAGTTTTGTCCTGTCGGTCTT                    
rJMSF017N08+          AGGGAGGCAATTCTTGTCGCAGTTTTGTCCTGTCGGTCTTGTTCTTTTACATTTTGATTG
rJMFF045F10+          AGGGAGGCAATTCTTGTCGCAGTTTTGTCCTGTCGGTCTTGTTCTTTTACATTTTGATTG
                      ____________________________________________________________
consensus             AGGGAGGCAATTCTTGTCGCAGTTTTGTCCTGTCGGTCTTGTTCTTTTACATTTTGATTG
 
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rJMSF017N08+          TGACAGAACAAGGATTATAATTTACTTATTTTCTTTGTCATATTGCTTGTGATCTTTCGG
rJMFF045F10+          TGACAGAACAAGGATTATAATTTACTTATTTTCTTTGTCATATTGCTTGTGATCTTTCGG
                      ____________________________________________________________
consensus             TGACAGAACAAGGATTATAATTTACTTATTTTCTTTGTCATATTGCTTGTGATCTTTCGG
 
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rJMSF017N08+          AACGTTACAAGT                                                
rJMFF045F10+          AACGTTACAAGTTGTTAGAGACTCCTATTTTTCTTCAAATATATTATAATATATGTTGTC
                      ____________________________________________________________
consensus             AACGTTACAAGTTGTTAGAGACTCCTATTTTTCTTCAAATATATTATAATATATGTTGTC