Contig 005521:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF045E20Sequence636002189 (2)ref|XP_011086259.1|4e-117PREDICTED: transcriptional adapter ADA2b-like [Sesamum indicum]643005521 (2)
JMSF019J23Sequence442007784 (4)ref|XP_007133039.1|1e-14hypothetical protein PHAVU_011G146200g [Phaseolus vulgaris] gb|ESW05033.1| hypot795005521 (2)ref|XP_010646250.1|5e-20PREDICTED: transcriptional adapter ADA2b isoform X1 [Vitis vinifera] ref|XP_0106

Alignment

This contig is upended


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rJMSF019J23+                                                                AGGTCG
                      ____________________________________________________________
consensus                                                                   AGGTCG
 
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rJMSF019J23+          GAAATCATTTAGATGCTAAATGTGAAAACTTAGCTGATGCTGTTGCTATTGATGACATNG
                      ____________________________________________________________
consensus             GAAATCATTTAGATGCTAAATGTGAAAACTTAGCTGATGCTGTTGCTATTGATGACATNG
 
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rJMSF019J23+          GATGAGGTGCAAAAGACTTGGCTGAGCAAACAGTGTGAGACTATGAGTGCAAAGTTGAGG
                      ____________________________________________________________
consensus             GATGAGGTGCAAAAGACTTGGCTGAGCAAACAGTGTGAGACTATGAGTGCAAAGTTGAGG
 
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rJMSF019J23+          TAGGATAGGATTCACCCCATTGCTAAGTGTGGTTGCACAGATCAAGGAGGAAAAAGGAAT
                      ____________________________________________________________
consensus             TAGGATAGGATTCACCCCATTGCTAAGTGTGGTTGCACAGATCAAGGAGGAAAAAGGAAT
 
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rJMSF019J23+          GCCTGGAATGGAGAAAATTTAGACTACATTTCAGGCTCGATGAGAGAAAACGTAGAAAAG
                      ____________________________________________________________
consensus             GCCTGGAATGGAGAAAATTTAGACTACATTTCAGGCTCGATGAGAGAAAACGTAGAAAAG
 
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rJMSF019J23+          ATTTCATAACAGAAAGGAATTTGCTCTATCCAACTGAATTTGAGAAGACGTTATCTCAAG
                      ____________________________________________________________
consensus             ATTTCATAACAGAAAGGAATTTGCTCTATCCAACTGAATTTGAGAAGACGTTATCTCAAG
 
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rJMSF019J23+          AAGAGAAGGATATATGGCGACGCTATGATGCCTTCATGCGTTTTCATTCCAGGGAAGAGC
                      ____________________________________________________________
consensus             AAGAGAAGGATATATGGCGACGCTATGATGCCTTCATGCGTTTTCATTCCAGGGAAGAGC
 
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rJMSF019J23+          ATGAAAGAACTACTTAAGGCTATAATCTCAGAGCATAGAATTCTGAAAAGAATAAAAGAA
                      ____________________________________________________________
consensus             ATGAAAGAACTACTTAAGGCTATAATCTCAGAGCATAGAATTCTGAAAAGAATAAAAGAA
 
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rJMSF019J23+          CTCAAGGAGAAACAAGTATGTGGTGACATTAGGATGCCGCCGCCACATTATCTTAAGATG
                      ____________________________________________________________
consensus             CTCAAGGAGAAACAAGTATGTGGTGACATTAGGATGCCGCCGCCACATTATCTTAAGATG
 
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rJMSF019J23+          CTAGAATTGATGACAGTACACATACAGCGGAGACATCACCAAAATGTCTGATGCTTATAC
                      ____________________________________________________________
consensus             CTAGAATTGATGACAGTACACATACAGCGGAGACATCACCAAAATGTCTGATGCTTATAC
 
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rJMSF019J23+          CTTCTTCCAAATCAAAACAACCAAAGTGGATAGAGTCTATGATATGCTTTTGAAGAAGGG
                      ____________________________________________________________
consensus             CTTCTTCCAAATCAAAACAACCAAAGTGGATAGAGTCTATGATATGCTTTTGAAGAAGGG
 
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rJMSF019J23+          TATTGCCCCATTGTGAAAATAAGTTGTTCATTCGTAGATTATCTATTCTTTAACGGCTGG
                      ____________________________________________________________
consensus             TATTGCCCCATTGTGAAAATAAGTTGTTCATTCGTAGATTATCTATTCTTTAACGGCTGG
 
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rJMSF019J23+          ATGGAGCGAGGGTGTTTTAGTGGTACAAATGTGCATAATTCATCTTTCCACATCAGGCTG
rJMFF045E20+                           TAGTGGTACAAATGTGCATAATTCATCTTTCCACATCAGGCTG
                      ____________________________________________________________
consensus             ATGGAGCGAGGGTGTTTTAGTGGTACAAATGTGCATAATTCATCTTTCCACATCAGGCTG
 
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rJMSF019J23+          CATGGTTTCAAACCTACGCCATCAGGATCCTCTGATAGTGTAATGTTGTATAACCAAAAC
rJMFF045E20+          CATGGTTTCAAACCTACGCCATCAGGATCCTCTGATAGTGTAATGTTGTATAACCAAAAC
                      ____________________________________________________________
consensus             CATGGTTTCAAACCTACGCCATCAGGATCCTCTGATAGTGTAATGTTGTATAACCAAAAC
 
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rJMSF019J23+          CATAAATTT                                                   
rJMFF045E20+          CATAAATTTGTAATTTTAAACTTAGTTTTCTCCAATTTCATTGTGTTTTCAATTGATACA
                      ____________________________________________________________
consensus             CATAAATTTGTAATTTTAAACTTAGTTTTCTCCAATTTCATTGTGTTTTCAATTGATACA
 
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rJMFF045E20+          TATGATTTGAGAGGCTGTGTGCTCATAGTGTCAGTTCCCAGCAAATGCAGTGATATACTC
                      ____________________________________________________________
consensus             TATGATTTGAGAGGCTGTGTGCTCATAGTGTCAGTTCCCAGCAAATGCAGTGATATACTC
 
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rJMFF045E20+          ATTACCCTGGAGAAATTTCAGTCAGGCATTGCAGTGTAGATCTCTTTGACATGTTTGGGG
                      ____________________________________________________________
consensus             ATTACCCTGGAGAAATTTCAGTCAGGCATTGCAGTGTAGATCTCTTTGACATGTTTGGGG
 
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rJMFF045E20+          ATACCAGGTTGAGGAGAATCTTTGAATCTTGGTTTCAATTTTGTGTTGAAATTGCAGCAG
                      ____________________________________________________________
consensus             ATACCAGGTTGAGGAGAATCTTTGAATCTTGGTTTCAATTTTGTGTTGAAATTGCAGCAG
 
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rJMFF045E20+          AGTGATGGTGATAAGATTTCCTCAATTGTTGTACCATGGACTAACATCCATATGGACTCT
                      ____________________________________________________________
consensus             AGTGATGGTGATAAGATTTCCTCAATTGTTGTACCATGGACTAACATCCATATGGACTCT
 
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rJMFF045E20+          AATCTAAAAATTATGTGTCTGCATTATGTATCTGCAGTTAATAGTTTGTGTTTGTGGACC
                      ____________________________________________________________
consensus             AATCTAAAAATTATGTGTCTGCATTATGTATCTGCAGTTAATAGTTTGTGTTTGTGGACC
 
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rJMFF045E20+          TTGTGGTTACCGTTTTGTGTCTTTAGTTAACATGTTATTTGCCTTTAATTTCTTTATAGA
                      ____________________________________________________________
consensus             TTGTGGTTACCGTTTTGTGTCTTTAGTTAACATGTTATTTGCCTTTAATTTCTTTATAGA
 
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rJMFF045E20+          CACAAAAACGTTAATTGTAGGTACAGAATGTAATTGCAGAGTGCAGACACATAATTTTGA
                      ____________________________________________________________
consensus             CACAAAAACGTTAATTGTAGGTACAGAATGTAATTGCAGAGTGCAGACACATAATTTTGA
 
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rJMFF045E20+          AGGTTATTTTAGACTAGGGTTCAAAATGCAAGATAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus             AGGTTATTTTAGACTAGGGTTCAAAATGCAAGATAAAAAAAAAAAAAAACTCTCCAGGGT