| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001H17 | Sequence | 516 | 002033 (7) | 671 | 005520 (6) | ref|XP_009630870.1| | 6e-76 | PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Nicotiana tomentosiformis | |||
| JMFF017E18 | Sequence | 586 | 002033 (7) | ref|XP_004246663.1| | 2e-08 | PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Solanum lycopersicum] | 666 | 005520 (6) | ref|XP_004246663.1| | 1e-62 | PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Solanum lycopersicum] |
| JMFF023K16 | Sequence | 563 | 002033 (7) | 661 | 005520 (6) | ref|XP_009630870.1| | 5e-70 | PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Nicotiana tomentosiformis | |||
| JMFF045E08 | Sequence | 645 | 002033 (7) | ref|XP_004246663.1| | 7e-11 | PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Solanum lycopersicum] | 643 | 005520 (6) | ref|XP_009630870.1| | 6e-70 | PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Nicotiana tomentosiformis |
| JMSF001I04 | Sequence | 255 | 002033 (7) | 711 | 005520 (6) | ref|XP_009630870.1| | 4e-82 | PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Nicotiana tomentosiformis | |||
| JMSF008G18 | Sequence | 488 | 002033 (7) | 693 | 005520 (6) | ref|XP_009630870.1| | 1e-73 | PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Nicotiana tomentosiformis | |||
This contig is upended
. : . : . : . : . : . :
rJMSF008G18+ AGCTCAGAAGTTCAGACAGCCCCCTGGGACCGGCANTGACCTTTCAGCG
rJMFF001H17+ TCAGCG
rJMFF023K16+ TTTCAGCG
rJMFF017E18+ TTTCAGCG
rJMSF001I04+ GGTTTAGCTCAGAAGTTCAGACAGCCCCCTGGGACCGGCATNGACCTTTCAGCG
____________________________________________________________
consensus GGTTTAGCTCAGAAGTTCAGACAGCCCCCTGGGACCGGCATTGACCTTTCAGCG
. : . : . : . : . : . :
rJMSF008G18+ TTTGAGGAAGCAGAGTTGTCTGAGGGTGAGACGGATGTGTATCCCCNGGCCANTAAGGCA
rJMFF001H17+ TTTGAGGAAGCAGAGTTGTCTGAGGGTGAGACGGATGTGTATCCCCTGGCCACTAAGGCA
rJMFF023K16+ TTTGAGGAAGCAGAGTTGTCTGAGGGTGAGACGGATGTGTATCCCCTGGCCACTAAGGCA
rJMFF017E18+ TNTGAGGAAGCAGAGTTGTCTGAGGGTGAGACGGATGTGTATCCCCNGGCCACTAAGGCA
rJMSF001I04+ TTTGAGGAAGCAGAGTTGTCTGAGGGTGAGACGGATGTGTATCCCCTGGCCACTAAGGCA
____________________________________________________________
consensus TTTGAGGAAGCAGAGTTGTCTGAGGGTGAGACGGATGTGTATCCCCTGGCCACTAAGGCA
. : . : . : . : . : . :
rJMSF008G18+ GAGGCATCCTCCGTAGATACCCAAAANGAATCAGTTGANGGAAACGCTGGGTCTGGGTCC
rJMFF001H17+ GAGGCATCCTCCGTAGATACCCAAAATGAATCAGTTGATGGAAACGCTGGGTNTGGGTCC
rJMFF023K16+ GAGGCATCCTCCGTAGATACCCAAAATGAATCAGTTGATGGAAACGCTGGGTCTGGGTCC
rJMFF017E18+ GAGGCATCCNCNGTAGATACCCAAAATGAATCAGTTGANGGAAACGCTGGGTNTGGGTCC
rJMSF001I04+ GAGGCATCCTCCGTAGATACCCAAAATGAATCAGTTGATGGAAACGCTGGGTCTGGGTCC
rJMFF045E08+ TCCGTAGATACCCAAAATGAATCAGTTGATGGAAACGCTGGGTCTGGGTCC
____________________________________________________________
consensus GAGGCATCCTCCGTAGATACCCAAAATGAATCAGTTGATGGAAACGCTGGGTCTGGGTCC
. : . : . : . : . : . :
rJMSF008G18+ ANGAATTCCCAGATAACACANGCGGTGTNTGAAAAGGAGAAAGGGAAATATCACACTAGG
rJMFF001H17+ ATGAATTCCCAGATAACACAAGCGGTGTTTGAAAAGGAGAAAGGGAAATATCACANTAGG
rJMFF023K16+ ANGAATTCCCAGATAACACAAGCGGTGTNTGAAAAGGAGAAAGGGAAATATCNCANTAGG
rJMFF017E18+ ANGAATTCCCAGATAACACAAGCGGTGTNTGAAAAGGAGAAAGGGAAATATCNCANTAGG
rJMSF001I04+ ANGAATTCCCAGATAACACANGCGGTGTTTGAAAAGGAGAAAGGGAAATATCACANTAGG
rJMFF045E08+ ACGAATTCCCAGATAACACAAGCGGTGTTTGAAAAGGAGAAAGGGAAATATCACATTAGG
____________________________________________________________
consensus ATGAATTCCCAGATAACACAAGCGGTGTTTGAAAAGGAGAAAGGGAAATATCACATTAGG
. : . : . : . : . : . :
rJMSF008G18+ GNGGNTAAGCAAATTTTATGGGTCAATGGTATGAGGTATGAACTGCAGGAGATATATGGG
rJMFF001H17+ GTGGNTAAGCAAATTTTATGGGTCAATGGTATGAGGTATGAACTGCAGGAGATATATGGG
rJMFF023K16+ GTGGNTAAGCAAATTTTATGGGTCAATGGTATGAGGTATGAACTGCAGGAGATATATGGG
rJMFF017E18+ GNGGNTAAGCAAATTTTATGGGTCAATGGTATGAGGTATGAACTGCAGGAGATATATGGG
rJMSF001I04+ GNGGNTAAGCAAATNTTATGGGTCAATGGTATGAGGTATGAACTGCAGGAGATATATGGG
rJMFF045E08+ GTGGTTAAGCAAATTTTATGGGTCAATGGTATGAGGTATGAACTGCAGGAGATATATGGG
____________________________________________________________
consensus GTGGTTAAGCAAATTTTATGGGTCAATGGTATGAGGTATGAACTGCAGGAGATATATGGG
. : . : . : . : . : . :
rJMSF008G18+ ANTGGAAATTCANTCGAAGGTGAAGTTGANGGAAACGATCCNGGGAAGGAGTGCGTCATA
rJMFF001H17+ ANTGGAAATTCAATCGAAGGTGAAGTTGATGGAAACGATCCNGGGAAGGANTGCGTCATA
rJMFF023K16+ ANTGGAAATTCAATCGAAGGTGAAGTTGATGGAAACGATCNNGGGAAGGANTGCGTCATA
rJMFF017E18+ ANTGGAAATTCANTCGAAGGTGAAGTTGATGGAAACGATCNNGGGAAGGANTGCGTCATA
rJMSF001I04+ ANTGGAAATTCANTCGAAGGTGAAGTTGANGGAAACGATCCNGGGAAGGANTGCGTCATA
rJMFF045E08+ ATTGGAAATTCAATCGAAGGTGAAGTTGATGGAAACGATCCTGGGAAGGACTGCGTCATA
____________________________________________________________
consensus ATTGGAAATTCAATCGAAGGTGAAGTTGATGGAAACGATCCTGGGAAGGAGTGCGTCATA
. : . : . : . : . : . :
rJMSF008G18+ TGCCTTTCTGAACCTCGAGACACTACTGTCCTTCCCNGTCGGCACANGTGTATGTGTAGT
rJMFF001H17+ TGCCTTTCTGAACCTCGAGACACTACTGTCNTTCCCTGTCGGCACATGTGTATGTGTAGT
rJMFF023K16+ TNCCTTTCTGANCCTCGAGACACTACTGTCNTTCCCTGTCGGCACANGTGTATGTGTAGT
rJMFF017E18+ TNCCTTTCTGAACCTCGAGACACTACTGTCNTTCCCTGTCGGCACANGTGTATGTGTAGT
rJMSF001I04+ TGCCTTTCTGAACCTCGAGACACTACTGTCCTTCCCNGTCGGCACANGTGTATGTGTAGT
rJMFF045E08+ TGCCTTTCTGAACCTCGAGACACTACTGTCCTTCCCCGTCGGCACATGTGTATGTGTAGT
____________________________________________________________
consensus TGCCTTTCTGAACCTCGAGACACTACTGTCCTTCCCTGTCGGCACATGTGTATGTGTAGT
. : . : . : . : . : . :
rJMSF008G18+ GGTTGTGCAAAACTTTTGAGGTACCAAACAAATCGGTGTCCTATTTGCAGACANCCGGNT
rJMFF001H17+ GGTTGTGCAAAACTTTTGAGGTACCAAACAAATCGGTGTCNTATTTGCAGACANCCGGNT
rJMFF023K16+ GGTTGTGCAAAACTTTTGAGGTACCAAACAAATCGGTGTCNTATTTGCAGACANCCGGNT
rJMFF017E18+ GGNTGTGCAAAACTTTTGAGGTACCAAACAAATCGGTGTCNTATTTGCAGACANCCGGNT
rJMSF001I04+ GGNTGTGCAAAACTTTTGAGGTACCAAACAAATCGGTGTCCTATTTGCAGACANCCGGNT
rJMFF045E08+ GGTTGTGCAAAACTTTTGAGGTACCAAACAAATCGGTGTCCTATTTGCAGACAACCGGTT
____________________________________________________________
consensus GGTTGTGCAAAACTTTTGAGGTACCAAACAAATCGGTGTCCTATTTGCAGACAACCGGTT
. : . : . : . : . : . :
rJMSF008G18+ GAGCGTCTCTTGGAGATCAAGGTCAATAATGATGATGCCGAGGAATGAAAAGAGGAATAG
rJMFF001H17+ GAGCGTCTCTTGGAGATCAAGGTCAATAATGATGATGCCGAGGAATGAAAAGAGGAATAG
rJMFF023K16+ GAGCGTCTCTTGGAGATCAAGGTCAATAATGATGATGCCGAGGAATGAAAAGAGGAATAG
rJMFF017E18+ GAGCGTCTCTTGGAGATCAAGGTCAATAANGATGATGCCGAGGAATGAAAAGAGGAATAG
rJMSF001I04+ GAGCGTCTCTTGGAGATCAAGGTCAATAATGATGATGCCGAGGAATGAAAAGAGGAATAG
rJMFF045E08+ GAGCGTCTCTTGGAGATCAAGGTCAATAATGATGATGCCGAGGAATGAAAAGAGGAATAG
____________________________________________________________
consensus GAGCGTCTCTTGGAGATCAAGGTCAATAATGATGATGCCGAGGAATGAAAAGAGGAATAG
. : . : . : . : . : . :
rJMSF008G18+ CTTCCGCTATCTATTATCCTCATATTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
rJMFF001H17+ NTTCCGCTATNTATTATCCTCATATTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
rJMFF023K16+ CTTCCGCTATNTATTATCCTCATATTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
rJMFF017E18+ CTTCCGCTATNTATTATCCTCATATTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
rJMSF001I04+ CTTCCGCTATCTATTATCCTCATATTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
rJMFF045E08+ CTTCCGCTATCTATTATCCTCATATTTTTC--------TCTCTCTCTCTCTCTCTCTCTC
____________________________________________________________
consensus CTTCCGCTATCTATTATCCTCATATTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
. : . : . : . : . : . :
rJMSF008G18+ TCTTTCTTTTTGTTGTGATTTTTTCTTCTTCCTTTTCTGTCTTGCTCTGCCTTGCATCAT
rJMFF001H17+ TCTTTCTTTTTGTTGTGATTTTTTCTTCTTCCTTTTCTGTCTTGCTCTGCCTTGCATCAT
rJMFF023K16+ TCTTTCTTTTTGTTGTGATTTTTTCTTCTTCCTTTTCTGTCTTGCTCTGCCTTGCATCAT
rJMFF017E18+ TCTTTCTTTTTGTTGTGATTTTTTCTTCTTCCTTTTCTGTCTTGCTCTGCCTTGCATCAT
rJMSF001I04+ TCTTTCTTTTTGTTGTGATTTTTTCTTCTTCCTTTTCTGTCTTGCTCTGCCTTGCATCAT
rJMFF045E08+ TCTTTCTTTTTGTTGTGATTTTTTCTTCTTCCTTTTCTGTCTTGCTCTGCCTTGCATCAT
____________________________________________________________
consensus TCTTTCTTTTTGTTGTGATTTTTTCTTCTTCCTTTTCTGTCTTGCTCTGCCTTGCATCAT
. : . : . : . : . : . :
rJMSF008G18+ CCTATAGATTAAATTATTAAAAGGATGACAGACACCT
rJMFF001H17+ CCTATAGATTAAATTATTAAAAGGATGACAGACACCTTGAGGATTTGCAAT
rJMFF023K16+ CCTATAGATTAAATTATTAAAAGGATGACAGACACCTTGAGGATTTGCAATTG
rJMFF017E18+ CCTATAGATTAAATTATTAAAAGGATGACAGACACCTTGAGGATTTGCAATTG
rJMSF001I04+ CCTATAGATTAAATTATTAAAAGGATGACAGACACCTTGAGGATTTGCAATTG
rJMFF045E08+ CCTATAGATTAAATTATTAAAAGGATGACAGACACCTTGAGGATTTGCAATTGGGTTGTG
____________________________________________________________
consensus CCTATAGATTAAATTATTAAAAGGATGACAGACACCTTGAGGATTTGCAATTGGGTTGTG
. : . : . : . : . : . :
rJMFF045E08+ GATTTAATGAAATTTGTGTTGATTGTATCAAAGAAAAAAAAAAAAAAAACTCTCCAGGGT
____________________________________________________________
consensus GATTTAATGAAATTTGTGTTGATTGTATCAAAGAAAAAAAAAAAAAAAACTCTCCAGGGT