Contig 005518:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF044P18Sequence643005518 (2)ref|XP_003607354.1|6e-25hypothetical protein MTR_4g076880 [Medicago truncatula]597005518 (2)ref|XP_009776091.1|65.5PREDICTED: uncharacterized protein LOC104225913 [Nicotiana sylvestris] ref|XP_00

Alignment

This contig is upended


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JMFF044P18-                                                    TGTCTCTGATTCCAATACA
                      ____________________________________________________________
consensus                                                      TGTCTCTGATTCCAATACA
 
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JMFF044P18-           CTTGCAGGAACAGATAACCATGCTTCTGAGAGTATGATTCATTGAAAACATCTTTAGAAC
                      ____________________________________________________________
consensus             CTTGCAGGAACAGATAACCATGCTTCTGAGAGTATGATTCATTGAAAACATCTTTAGAAC
 
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JMFF044P18-           TACTTTTGGTCTATAGGAAGTCGCTATAAGTTGGGAATTACTAATATGAATAGTTGGATA
                      ____________________________________________________________
consensus             TACTTTTGGTCTATAGGAAGTCGCTATAAGTTGGGAATTACTAATATGAATAGTTGGATA
 
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JMFF044P18-           AACATTCAGGTCGACTTTTGACTGAACTAATCAGTTATGTGGAGCATTTGGGAGCAAAGT
                      ____________________________________________________________
consensus             AACATTCAGGTCGACTTTTGACTGAACTAATCAGTTATGTGGAGCATTTGGGAGCAAAGT
 
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JMFF044P18-           ACACAGTCCTCTACGTGTCAGATCCATCTAGGTCAATTCAATATCCATCTCATAGGGAGC
                      ____________________________________________________________
consensus             ACACAGTCCTCTACGTGTCAGATCCATCTAGGTCAATTCAATATCCATCTCATAGGGAGC
 
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JMFF044P18-           TAGAAAGATTTCTTGCTGAAGGTAGGTCTGGAAGTGGATCAGGAAATTCAACCTGTGATG
                      ____________________________________________________________
consensus             TAGAAAGATTTCTTGCTGAAGGTAGGTCTGGAAGTGGATCAGGAAATTCAACCTGTGATG
 
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JMFF044P18-           GAGTATGCCAACTTAAGTCAACGTTTTTGGAGGGAATAATGGTGGTAAGTCCACGACATC
rJMFF044P18+             TATGCCAACTTAAGTCAACGTTTTTGGAGGGAATAATGGTGGTAAGTCCACGACATC
                      ____________________________________________________________
consensus             GAGTATGCCAACTTAAGTCAACGTTTTTGGAGGGAATAATGGTGGTAAGTCCACGACATC
 
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JMFF044P18-           TTTTTCCCTATTCTATGGCATGCAGTTTGCTCTTACGATACCATTATAGAATTCTTCAGT
rJMFF044P18+          TTTTTCCCTATTCTATGGCATGCAGTTTGCTCTTACGATACCATTATAGAATTCTTCAGT
                      ____________________________________________________________
consensus             TTTTTCCCTATTCTATGGCATGCAGTTTGCTCTTACGATACCATTATAGAATTCTTCAGT
 
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JMFF044P18-           ATATAAATTGTGTATTTTTGGACCCAGGTCCACAGAATAATTTGCCGTTTATAGCAAGGT
rJMFF044P18+          ATATAAATTGTGTATTTTTGGACCCAGGTCCACAGAATAATTTGCCGTTTATAGCAAGGT
                      ____________________________________________________________
consensus             ATATAAATTGTGTATTTTTGGACCCAGGTCCACAGAATAATTTGCCGTTTATAGCAAGGT
 
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JMFF044P18-           CATCATGTGCTTTTATCTTTGTTATGGCTTCCCATAAACAATTTTTTCTCGATTACCATT
rJMFF044P18+          CATCATGTGCTTTTATCTTTGTTATGGCTTCCCATAAACAATTTTTTCTCGATTACCATT
                      ____________________________________________________________
consensus             CATCATGTGCTTTTATCTTTGTTATGGCTTCCCATAAACAATTTTTTCTCGATTACCATT
 
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JMFF044P18-           ACCTGTATAGCTCTTTGTTTATCTTTGTCGAACTGGTATGCTGGGCCAAACTCATTAGTG
rJMFF044P18+          ACCTGTATAGCTCTTTGTTTATCTTTGTCGAACTGGTATGCTGGGCCAAACTCATTAGTG
                      ____________________________________________________________
consensus             ACCTGTATAGCTCTTTGTTTATCTTTGTCGAACTGGTATGCTGGGCCAAACTCATTAGTG
 
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JMFF044P18-           TGCTTCTCATAATGTTTCAGGCAG                                    
rJMFF044P18+          TGCTTCTCATAATGTTTCAGGCAGTTGTTTTACTTATAATCTTGATATCTGGTCTTTGCT
                      ____________________________________________________________
consensus             TGCTTCTCATAATGTTTCAGGCAGTTGTTTTACTTATAATCTTGATATCTGGTCTTTGCT
 
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rJMFF044P18+          GCATGATGGGAATTGACACTCCCACAAGGTTTGAGGCTCCTGTGGATTCTTAATCACTCG
                      ____________________________________________________________
consensus             GCATGATGGGAATTGACACTCCCACAAGGTTTGAGGCTCCTGTGGATTCTTAATCACTCG
 
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rJMFF044P18+          ACTCTGCCATAATACGATTGTATTGGGATGTGCTCTCATGGTTGTCAAATGTAATGTAGT
                      ____________________________________________________________
consensus             ACTCTGCCATAATACGATTGTATTGGGATGTGCTCTCATGGTTGTCAAATGTAATGTAGT
 
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rJMFF044P18+          TTTGTCAGAGCTTTATTTAACCCTGTAATTTTTGTTTATTTGAGAAGAGGGCATTAGTTT
                      ____________________________________________________________
consensus             TTTGTCAGAGCTTTATTTAACCCTGTAATTTTTGTTTATTTGAGAAGAGGGCATTAGTTT
 
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rJMFF044P18+          ATGTACATGCACTTGCTAAATGGTATGGTATTAATAATAGCATGAGATTTTTCTTGGTCC
                      ____________________________________________________________
consensus             ATGTACATGCACTTGCTAAATGGTATGGTATTAATAATAGCATGAGATTTTTCTTGGTCC