Contig 005517:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFF014L23-               ACTCTCCACTCTCCACTCCTCCCAAGTCCCAACAACTCACTCTCGACAGCTCTTCC
JMFF009J16-                   TCCACTCTCCACTCCTCCCAAGTCCCAACAACTCACTCTCGACAGCTCTTCC
JMFF028O08-                   TCCACTCTCCACTCCTCCCAAGTCCCAACAACTCACTCTCGACAGCTCTTCC
rJMFF014L23+                                    CAAGTCCCAACAACTCACTCTCGACAGCTCTTCC
                      ____________________________________________________________
consensus                 ACTCTCCACTCTCCACTCCTCCCAAGTCCCAACAACTCACTCTCGACAGCTCTTCC
 
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JMFF014L23-           CAACAACAACTCATTCTCAGGTTCCTCTCCGGCACTCTCAGGTTCTTCTCCAGCAACAAC
JMFF009J16-           CAACAACAACTCATTCTCAGGTTCCTCTCCGGCACTCTCAGGTTCTTCTCCAGCAACAAC
JMFF028O08-           CAACAACAACTCATTCTCAGGTTCCTCTCCGGCACTCTCAGGTTCTTCTCCAGCAACAAC
rJMFF028O08+                                                          TCCAGCAACAAC
rJMFF009J16+                                                         CTCCAGCAACAAC
rJMFF014L23+          CAACAACAACTCATTCTCAGGTTCCTCTCCGGCACTCTCAGGTTCTTCTCCAGCAACAAC
                      ____________________________________________________________
consensus             CAACAACAACTCATTCTCAGGTTCCTCTCCGGCACTCTCAGGTTCTTCTCCAGCAACAAC
 
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JMFF014L23-           TCGCGTCAACATCAACATT-CAACAGACCATTAAGACTCAGCAAAATGAGGAGCTATCTG
JMFF009J16-           TCGCGTCAACATCAACATT-CAACAGACCATTAAGACTCAGCAAAATGAGGAGCTATCTG
JMFF028O08-           TCGCGTCAACATCAACATT-CAACAGACCATTAAGACTCAGCAAAATGAGGAGCTATCTG
rJMFF028O08+          TCGCGTCAACATCAACATT-CAACAGACCATTAAGACTCAGCAAAATGAGGAGCTATCTG
rJMFF009J16+          TCGCGTCAACATCAACATT-CAACAGACCATTAAGACTCAGCAAAATGAGGAGCTATCTG
rJMFF014L23+          TCGCGTCAACATCAACATTCCAACAGACCATTAAGACTCAGCAAAATGAGGAGCTATCTG
                      ____________________________________________________________
consensus             TCGCGTCAACATCAACATT-CAACAGACCATTAAGACTCAGCAAAATGAGGAGCTATCTG
 
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JMFF014L23-           GCTGCAGTCTTAATGATCTGGGACGTATGATAAAGGAACAAGAAAGACAACTTACTGCTT
JMFF009J16-           GCTGCAGTCTTAATGATCTGGGACGTATGATAAAGGAACAAGAAAGACAACTTACTGCTT
JMFF028O08-           GCTGCAGTCTTAATGATCTGGGACGTATGATAAAGGAACAAGAAAGACAACTTACTGCTT
rJMFF028O08+          GCTGCAGTCTTAATGATCTGGGACGTATGATAAAGGAACAAGAAAGACAACTTACTGCTT
rJMFF009J16+          GCTGCAGTCTTAATGATCTGGGACGTATGATAAAGGAACAAGAAAGACAACTTACTGCTT
rJMFF014L23+          GCTGCAGTCTTAATGATCTGGGACGTATGATAAAGGAACAAGAAAGACAACTTACTGCTT
rJMFF044H09+                                      GATAAAGGAACAAGAAAGACAACTTNCTGCTT
                      ____________________________________________________________
consensus             GCTGCAGTCTTAATGATCTGGGACGTATGATAAAGGAACAAGAAAGACAACTTACTGCTT
 
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JMFF014L23-           TACTTGAGGAGCACCGCGGCGTTTTGGCCGAGTTAGAGATGCCACTTCAGCTGCATGTTG
JMFF009J16-           TACTTGAGGAGCACCGCGGCGTTTTGGCCGAGTTAGAGATGCCACTTCAGCTGCATGTTG
JMFF028O08-           TACTTGAGGAGCACCGCGGCGTTTTGGCCGAGTTAGAGATGCCACTTCAGCTGCATGTTG
rJMFF028O08+          TACTTGAGGAGCACCGCGGCGTTTTGGCCGAGTTAGAGATGCCACTTCAGCTGCATGTTG
rJMFF009J16+          TACTTGAGGAGCACCGCGGCGTTTTGGCCGAGTTAGAGATGCCACTTCAGCTGCATGTTG
rJMFF014L23+          TACTTGAGGAGCACCGCGGCGTTTTGGCCGAGTTAGAGATGCCACTTCAGCTGCATGTTG
rJMFF044H09+          TACTTGAGGAGCACCGCGGCGTTTTGGCCGAGTTAGAGATGCCACTTCAGCTGCATGTTG
                      ____________________________________________________________
consensus             TACTTGAGGAGCACCGCGGCGTTTTGGCCGAGTTAGAGATGCCACTTCAGCTGCATGTTG
 
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JMFF014L23-           AAAGGGCGTTGACAATAGCCAGAAAGTACTGCGAAATAAAAAGCAATCGGGATGAGATAA
JMFF009J16-           AAAGGGCGTTGACAATAGCCAGAAAGTACTGCGAAATAAAAAGCAATCGGGATGAGATAA
JMFF028O08-           AAAGGGCGTTGACAATAGCCAGAAAGTACTGCGAAATAAAAAGCAATCGGGATGAGATAA
rJMFF028O08+          AAAGGGCGTTGACAATAGCCAGAAAGTACTGCGAAATAAAAAGCAATCGGGATGAGATAA
rJMFF009J16+          AAAGGGCGTTGACAATAGCCAGAAAGTACTGCGAAATAAAAAGCAATCGGGATGAGATAA
rJMFF014L23+          AAAGGGCGTTGACAATAGCCAGAAAGTACTGCGAAATAAAAAGCAATCGGGATGAGATAA
rJMFF044H09+          AAAGGGCGTTGACAATAGCCAGAAAGTACTGCGAAATAAAAAGCAATCGGGATGAGATAA
                      ____________________________________________________________
consensus             AAAGGGCGTTGACAATAGCCAGAAAGTACTGCGAAATAAAAAGCAATCGGGATGAGATAA
 
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JMFF014L23-           CTGCGCTTAATACTAAATTGGAAATTGTCAACCAGGAAATCGATAAAATCATCAAAGAGG
JMFF009J16-           CTGCGCTTAATACTAAATTGGAAATTGTCAACCAGGAAATCGATAAAATCATCAAAGAGG
JMFF028O08-           CTGCGCTTAATACTAAATTGGAAATTGTCAACCAGGAAATCGATAAAATCATCAAAGAGG
rJMFF028O08+          CTGCGCTTAATACTAAATTGGAAATTGTCAACCAGGAAATCGATAAAATCATCAAAGAGG
rJMFF009J16+          CTGCGCTTAATACTAAATTGGAAATTGTCAACCAGGAAATCGATAAAATCATCAAAGAGG
rJMFF014L23+          CTGCGCTTAATACTAAATTGGAAATTGTCAACCAGGAAATCGATAAAATCATCAAAGAGG
rJMFF044H09+          CTGCGCTTAATACTAAATTGGAAATTGTCAACCAGGAAATCGATAAAATCATCAAAGAGG
                      ____________________________________________________________
consensus             CTGCGCTTAATACTAAATTGGAAATTGTCAACCAGGAAATCGATAAAATCATCAAAGAGG
 
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JMFF014L23-           GGAAGCGGTTGGAAGTCTTAAACGATGAGGCGAAAGGCTTCCTTGCCAACTTACAACAAG
JMFF009J16-           GGAAGCGGTTGGAAGTCTTAAACGATGAGGCGAAAGGCTTCCTTGCCAACTTACAACAAG
JMFF028O08-           GGAAGCGGTTGGAAGTCTTAAACGATGAGGCGAAAGGCTTCCTTGCCAACTTACAACAAG
rJMFF028O08+          GGAAGCGGTTGGAAGTCTTAAACGATGAGGCGAAAGGCTTCCTTGCCAACTTACAACAAG
rJMFF009J16+          GGAAGCGGTTGGAAGTCTTAAACGATGAGGCGAAAGGCTTCCTTGCCAACTTACAACAAG
rJMFF014L23+          GGAAGCGGTTGGAAGTCTTAAACGATGAGGCGAAAGGCTTCCTTGCCAACTTACAACAAG
rJMFF044H09+          GGAAGCGGTTGGAAGTCTTAAACGATGAGGCGAAAGGCTTCCTTGCCAACTTACAACAAG
                      ____________________________________________________________
consensus             GGAAGCGGTTGGAAGTCTTAAACGATGAGGCGAAAGGCTTCCTTGCCAACTTACAACAAG
 
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JMFF014L23-           CTTTGGACGATTTGGTGAACTTATCACGATCTACATAGGCTTTTATGCCCCTAGGTTTGG
JMFF009J16-           CTTTGGACGATTTGGTGAACTTATCACGATCTACATAGGCTTTTATGCCCCTAGGTTTGG
JMFF028O08-           CTTTGGACGATTTGGTGAACTTATCACGATCTACATAGGCTTTTATGCCCCTAGGTTTGG
rJMFF028O08+          CTTTGGACGATTTGGTGAACTTATCACGATCTACATAGGCTTTTATGCCCCTAGGTTTGG
rJMFF009J16+          CTTTGGACGATTTGGTGAACTTATCACGATCTACATAGGCTTTTATGCCCCTAGGTTTGG
rJMFF014L23+          CTTTGGACGATTTGGTGAACTTATCACGATCTACATAGGCTTTTATGCCCCTAGGTTTGG
rJMFF044H09+          CTTTGGACGATTTGGTGAACTTATCACGATCTACATAGGCTTTTATGCCCCTAGGTTTGG
                      ____________________________________________________________
consensus             CTTTGGACGATTTGGTGAACTTATCACGATCTACATAGGCTTTTATGCCCCTAGGTTTGG
 
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JMFF014L23-           ATGCATGGATGCATGATGCACTGTG                                   
JMFF009J16-           ATGCATGGATGCATGATGCACTGTGA                                  
JMFF028O08-           ATGCATGGATGCATGATGCACTGTGAGA                                
rJMFF028O08+          ATGCATGGATGCATGATGCACTGTGAGACTTGTAGACTTTTGCTGTGGATTTCTGTAGTG
rJMFF009J16+          ATGCATGGATGCATGATGCACTGTGAGACTTGTAGACTTTTGCTGTGGATTTCTGTAGTG
rJMFF014L23+          ATGCATGGATGCATGATGCACTGTGAGACTTGTAGACTTTTGCTGTGGATTTCTGTAGTG
rJMFF044H09+          ATGCATGGATGCATGATGCACTGTGAGACTTGTAGACTTTTGCTGTGGATTTCTGTAGTG
                      ____________________________________________________________
consensus             ATGCATGGATGCATGATGCACTGTGAGACTTGTAGACTTTTGCTGTGGATTTCTGTAGTG
 
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rJMFF028O08+          TTTCTTTGAGGTTCTATGGGATTGTATGATGCTTAATTAGACATTTGGGTCTTTGAACCC
rJMFF009J16+          TTTCTTTGAGGTTCTATGGGATTGTATGATGCTTAATTAGACATTTGGGTCTTTGAACCC
rJMFF014L23+          TTTCTTTGAGGTTCTATGGGATTGTATGATGCTTAATTAGACATTTGGGTCTTTGAACCC
rJMFF044H09+          TTTCTTTGAGGTTCTATGGGATTGTATGATGCTTAATTAGACATTTGGGTCTTTGAACCC
                      ____________________________________________________________
consensus             TTTCTTTGAGGTTCTATGGGATTGTATGATGCTTAATTAGACATTTGGGTCTTTGAACCC
 
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rJMFF028O08+          TTGTTTTATGTTTAGCATGTGTGTTTAATTTGTTTGGTGGATTTAGCCGGGCAGCTACCT
rJMFF009J16+          TTGTTTTATGTTTAGCATGTGTGTTTAATTTGTTTGGTGGATTTAGCCGGGCAGCTACCT
rJMFF014L23+          TTGTTTTATGTTTAGCATGTGTGTTTAATTTGTTTGGTGGATTTAGCCGGGCAGCTACCT
rJMFF044H09+          TTGTTTTATGTTTAGCATGTGTGTTTAATTTGTTTGGTGGATTTAGCCGGGCAGCTACCT
                      ____________________________________________________________
consensus             TTGTTTTATGTTTAGCATGTGTGTTTAATTTGTTTGGTGGATTTAGCCGGGCAGCTACCT
 
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rJMFF028O08+          AGGAGTGGATAGTTGTGACGGTAACACTAGCCGTGTTATGATTATGAATTCTAATCTTTT
rJMFF009J16+          AGGAGTGGATAGTTGTGACGGTAACACTAGCCGTGTTATGATTATGAATTCTAATCTTTT
rJMFF014L23+          AGGAGTGGATAGTTGTGACGGTAACACTAGCCGTGTTATGATTATGAATTCTAATCTTTT
rJMFF044H09+          AGGAGTGGATAGTTGTGACGGTAACACTAGCCGTGTTATGATTATGAATTCTAATCTTTT
                      ____________________________________________________________
consensus             AGGAGTGGATAGTTGTGACGGTAACACTAGCCGTGTTATGATTATGAATTCTAATCTTTT
 
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rJMFF028O08+          ATCTTAT                                                     
rJMFF009J16+          ATCTTAT                                                     
rJMFF014L23+          ATCTTAT                                                     
rJMFF044H09+          ATCTTATTTTAATTTAATGAAATCCGTTTAGCTAAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus             ATCTTATTTTAATTTAATGAAATCCGTTTAGCTAAAAAAAAAAAAAAAACTCTCCAGGGT