Contig 005516:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004L14Sequence476006691 (11)ref|XP_009771287.1|3e-15PREDICTED: GDT1-like protein 2, chloroplastic isoform X2 [Nicotiana sylvestris]717005516 (10)ref|XP_004247813.1|4e-78PREDICTED: GDT1-like protein 2, chloroplastic [Solanum lycopersicum]
JMFF005O21Sequence491006691 (11)ref|XP_009618080.1|4e-29PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis]672005516 (10)ref|XP_002518164.1|3e-55Transmembrane protein TPARL, putative [Ricinus communis] gb|EEF44297.1| Transmem
JMFF020F01Sequence507006691 (11)ref|XP_009618080.1|1e-29PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis]662005516 (10)ref|XP_010023776.1|7e-41PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Eucalyptus grandis] g
JMFF022A17Sequence571006691 (11)ref|XP_009618080.1|2e-47PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis]729005516 (10)ref|XP_010023776.1|1e-45PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Eucalyptus grandis] g
JMFF036H05Sequence506006691 (11)ref|XP_009618080.1|3e-30PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis]732005516 (10)ref|XP_004247813.1|1e-78PREDICTED: GDT1-like protein 2, chloroplastic [Solanum lycopersicum]
JMFF044G23Sequence642006691 (11)ref|XP_009618080.1|7e-61PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis]576005516 (10)ref|XP_002304693.2|1e-08hypothetical protein POPTR_0003s17320g [Populus trichocarpa] gb|EEE79672.2| hypo
JMSF010B17Sequence257006691 (11)736005516 (10)ref|XP_004247813.1|8e-90PREDICTED: GDT1-like protein 2, chloroplastic [Solanum lycopersicum]
JMSF011L12Sequence352006691 (11)ref|XP_009618080.1|5e-05PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis]702005516 (10)ref|XP_004247813.1|5e-88PREDICTED: GDT1-like protein 2, chloroplastic [Solanum lycopersicum]
JMSF044G22Sequence768006691 (11)ref|XP_009618080.1|2e-71PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis]747005516 (10)ref|XP_004247813.1|9e-88PREDICTED: GDT1-like protein 2, chloroplastic [Solanum lycopersicum]
JMSF045L23Sequence759006691 (11)ref|XP_009618080.1|1e-60PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis]683005516 (10)ref|XP_004247813.1|3e-78PREDICTED: GDT1-like protein 2, chloroplastic [Solanum lycopersicum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF011L12+ GGATCAATGGGTGCTCTTTCACTTATGAC
rJMSF010B17+ TGATGAAGTATTGGTCAGGTTCTTCTGGGATCAATGGGTGCTCTTTCACTTATGAC
rJMSF044G22+ TGGGATCAATGGGTGCTCTTTCACTTATGAC
                      ____________________________________________________________
consensus TGATGAAGTATTGGTCAGGTTCTTCTGGGATCAATGGGTGCTCTTTCACTTATGAC
 
. : . : . : . : . : . :
rJMSF011L12+ CATCTTCTCTGTCGTAATAGGAAGGATCTTTCATTCTGTGCCAGCACAGTTCCAAACAAC
rJMSF010B17+ CATCTTCTCTGTCGTAATAGGAAGGATCTTTCATTCTGTGCCAGCACAGTTCCAAACAAC
rJMSF044G22+ CATCTTCTCTGTCGTAATAGGAAGGATCTTTCATTCTGTGCCAGCACAGTTCCAAACAAC
rJMFF004L14+ CGTAATAGGAAGGATCTTTCATTCTGTGCCAGCACAGTTCCAAACAAC
rJMSF045L23+ CGTAATAGGAAGGATCTTTCATTCTGTGCCAGCACAGTTCCAAACAAC
rJMFF036H05+ GTCGTAATAGGAAGGATCTTTCATTCTGTGCCAGCACAGTTCCAAACAAC
                      ____________________________________________________________
consensus CATCTTCTCTGTCGTAATAGGAAGGATCTTTCATTCTGTGCCAGCACAGTTCCAAACAAC
 
. : . : . : . : . : . :
rJMSF011L12+ CTTGCCGATTGGAGAGTATGCAGCAATAGCACTTCTAGTATTCTTTGGCCTCAAGTCAAT
rJMSF010B17+ CTTGCCGATTGGAGAGTATGCAGCAATAGCACTTCTAGTATTCTTTGGCCTCAAGTCAAT
rJMSF044G22+ CTTGCCGATTGGAGAGTATGCAGCAATAGCACTTCTAGTATTCTTTGGCCTCAAGTCAAT
rJMFF004L14+ CTTGCCGATTGGAGAGTATGCAGCAATAGCACTTCTAGTATTCTTTGGCCTCAAGTCAAT
rJMSF045L23+ CTTGCCGATTGGAGAGTATGCAGCAATAGCACTTCTAGTATTCTTTGGCCTCAAGTCAAT
rJMFF036H05+ CTTGCCGATTGGAGAGTATGCAGCAATAGCACTTCTAGTATTCTTTGGCCTCAAGTCAAT
rJMFF005O21+ TTGGCCTCAAGTCAAT
                      ____________________________________________________________
consensus CTTGCCGATTGGAGAGTATGCAGCAATAGCACTTCTAGTATTCTTTGGCCTCAAGTCAAT
 
. : . : . : . : . : . :
rJMSF011L12+ CAAAGACGCGTGGGAACTTCCATCTGAGGAGGTTAAAACAGGTGATGAATACGTTGAGGC
rJMSF010B17+ CAAAGACGCGTGGGAACTTCCATCTGAGGAGGTTAAAACAGGTGATGAATACGTTGAGGC
rJMSF044G22+ CAAAGACGCGTGGGAACTTCCATCTGAGGAGGTTAAAACAGGTGATGAATACGTTGAGGC
rJMFF004L14+ CAAAGACGCGTGGGAACTTCCGTCTGAGGAGGTTAAAACAGGTGATGAATACGTTGAGGC
rJMSF045L23+ CAAAGACGCGTGGGAACTTCCATCTGAGGAGGTTAAAACAGGTGATGAATACGTTGAGGC
rJMFF036H05+ CAAAGACGCGTGGGAACTTCCATCTGAGGAGGTTAAAACAGGTGATGAATACGTTGAGGC
rJMFF005O21+ CAAAGACGCGTGGGAACTTCCATCTGAGGAGGTTAAAACAGGTGATGAATACGTTGAGGC
rJMFF022A17+ GTTAAAACAGGTGATGAATACGTTGAGGC
                      ____________________________________________________________
consensus CAAAGACGCGTGGGAACTTCCATCTGAGGAGGTTAAAACAGGTGATGAATACGTTGAGGC
 
. : . : . : . : . : . :
rJMSF011L12+ TGAGGAACTTGTGAAGGAAAAGGCTTCAAAGCGACTCTCGAATCCATTTGAAATTCTGTG
rJMSF010B17+ TGAGGAACTTGTGAAGGAAAAGGCTTCAAAGCGACTCTCGAATCCATTTGAAATTCTGTG
rJMSF044G22+ TGAGGAACTTGTGAAGGAAAAGGCTTCAAAGCGACTCTCGAATCCATTTGAAATTCTGTG
rJMFF004L14+ TGAGGAACTTGTGAAGGAAAAGGCTTCAAAGCGACTCTCGAATCCATTTGAAATTCTGTG
rJMSF045L23+ TGAGGAACTTGTGAAGGAAAAGGCTTCAAAGCGACTCTCGAATCCATTTGAAATTCTGTG
rJMFF036H05+ TGAGGAACTTGTGAAGGAAAAGGCTTCAAAGCGACTCTCGAATCCATTTGAAATTCTGTG
rJMFF005O21+ TGAGGAACTTGTGAAGGAAAAGGCTTCAAAGCGACTCTCGAATCCATTTGAAATTCTGTG
rJMFF020F01+ AGGCTTCAAAGCGACTCTCGAATCCATTTGAAATTCTGTG
rJMFF022A17+ TGAGGAACTTGTGAAGGAAAAGGCTTCAAAGCGACTCTCGAATCCATTTGAAATTCTGTG
                      ____________________________________________________________
consensus TGAGGAACTTGTGAAGGAAAAGGCTTCAAAGCGACTCTCGAATCCATTTGAAATTCTGTG
 
. : . : . : . : . : . :
rJMSF011L12+ GAAGTCATTCAGCCTTGTATTTTTTGCTGAATGGGGAGACCGCTCTATGCTTGCAACAAT
rJMSF010B17+ GAAGTCATTCAGCCTTGTATTTTTTGCTGAATGGGGAGACCGCTCTATGCTTGCAACAAT
rJMSF044G22+ GAAGTCATTCAGCCTTGTATTTTTTGCTGAATGGGGAGACCGCTCTATGCTTGCAACAAT
rJMFF004L14+ GAAGTCATTCAGCCTTGTATTTTTTGCTGAATGGGGAGACCGCTCTATGCTTGCAACAAT
rJMSF045L23+ GAAGTCATTCAGCCTTGTATTTTTTGCTGAATGGGGAGACCGCTCTATGCTTGCAACAAT
rJMFF036H05+ GAAGTCATTCAGCCTTGTATTTTTTGCTGAATGGGGAGACCGCTCTATGCTTGCAACAAT
rJMFF005O21+ GAAGTCATTCAGCCTTGTATTTTTTGCTGAATGGGGAGACCGCTCTATGCTTGCAACAAT
rJMFF020F01+ GAAGTCATTCAGCCTTGTATTTTTTGCTGAATGGGGAGACCGCTCTATGCTTGCAACAAT
rJMFF022A17+ GAAGTCATTCAGCCTTGTATTTTTTGCTGAATGGGGAGACCGCTCTATGCTTGCAACAAT
                      ____________________________________________________________
consensus GAAGTCATTCAGCCTTGTATTTTTTGCTGAATGGGGAGACCGCTCTATGCTTGCAACAAT
 
. : . : . : . : . : . :
rJMSF011L12+ AGCTTTGGGCGCGGCACAGTCTCCATGGGGAGTTGCAAGTGGTGCTATTGCTGGACACTT
rJMSF010B17+ AGCTTTGGGCGCGGCACAGTCTCCATGGGGAGTTGCAAGTGGTGCTATTGCTGGACACTT
rJMSF044G22+ AGCTTTGGGCGCGGCACAGTCTCCATGGGGAGTTGCAAGTGGTGCTATTGCTGGACACTT
rJMFF004L14+ AGCTTTGGGCGCGGCACAGTCTCCATGGGGAGTTGCAAGTGGTGCTATTGCTGGACACTT
rJMSF045L23+ AGCTTTGGGCGCGGCACAGTCTCCATGGGGAGTTGCAAGTGGTGCTATTGCTGGACACTT
rJMFF036H05+ AGCTTTGGGCGCGGCACAGTCTCCATGGGGAGTTGCAAGTGGTGCTATTGCTGGACACTT
rJMFF005O21+ AGCTTTGGGCGCGGCACAGTCTCCATGGGGAGTTGCAAGTGGTGCTATTGCTGGACACTT
rJMFF020F01+ AGCTTTGGGCGCGGCACAGTCTCCATGGGGAGTTGCAAGTGGTGCTATTGCTGGACACTT
rJMFF022A17+ AGCTTTGGGCGCGGCACAGTCTCCATGGGGAGTTGCAAGTGGTGCTATTGCTGGACACTT
rJMFF044G23+ ATGGGGAGTTGCAAGTGGTGCTATTGCTGGACACTT
                      ____________________________________________________________
consensus AGCTTTGGGCGCGGCACAGTCTCCATGGGGAGTTGCAAGTGGTGCTATTGCTGGACACTT
 
. : . : . : . : . : . :
rJMSF011L12+ GGTTGCAACATCTCTCGCAATACTAGGAGGCGCTTTTCTTGCCAACTACATTTCTGAAAA
rJMSF010B17+ GGTTGCAACATCTCTCGCAATACTAGGAGGCGCTTTTCTTGCCAACTACATTTCTGAAAA
rJMSF044G22+ GGTTGCAACATCTCTCGCAATACTAGGAGGCGCTTTTCTTGCCAACTACATTTCTGAAAA
rJMFF004L14+ GGTTGCAACATCTCTCGCAATACTAGGAGGCGCTTTTCTTGCCAACTACATTTCTGAAAA
rJMSF045L23+ GGTTGCAACATCTCTCGCAATACTAGGAGGCGCTTTTCTTGCCAACTACATTTCTGAAAA
rJMFF036H05+ GGTTGCAACATCTCTCGCAATACTAGGAGGCGCTTTTCTTGCCAACTACATTTCTGAAAA
rJMFF005O21+ GGTTGCAACATCTCTCGCAATACTAGGAGGCGCTTTTCTTGCCAACTACATTTCTGAAAA
rJMFF020F01+ GGTTGCAACATCTCTCGCAATACTAGGAGGCGCTTTTCTTGCCAACTACATTTCTGAAAA
rJMFF022A17+ GGTTGCAACATCTCTCGCAATACTAGGAGGCGCTTTTCTTGCCAACTACATTTCTGAAAA
rJMFF044G23+ GGTTGCAACATCTCTCGCAATACTAGGAGGCGCTTTTCTTGCCAACTACATTTCTGAAAA
                      ____________________________________________________________
consensus GGTTGCAACATCTCTCGCAATACTAGGAGGCGCTTTTCTTGCCAACTACATTTCTGAAAA
 
. : . : . : . : . : . :
rJMSF011L12+ GCTGGTGGGCTTCCTAGGTGGAGCTTTGTTTTTGGTTTTTGCTGGTGCCACGTTCTTTGG
rJMSF010B17+ GCTGGTGGGCTTCCTAGGTGGAGCTTTGTTTTTGGTTTTTGCTGGTGCCACGTTCTTTGG
rJMSF044G22+ GCTGGTGGGCTTCCTAGGTGGAGCTTTGTTTTTGGTTTTTGCTGGTGCCACGTTCTTTGG
rJMFF004L14+ GCTGGTGGGCTTCCTAGGTGGAGCTTTGTTTTTGGTTTTTGCTGGTGCCACGTTCTTTGG
rJMSF045L23+ GCTGGTGGGCTTCCTAGGTGGAGCTTTGTTTTTGGTTTTTGCTGGTGCCACGTTCTTTGG
rJMFF036H05+ GCTGGTGGGCTTCCTAGGTGGAGCTTTGTTTTTGGTTTTTGCTGGTGCCACGTTCTTTGG
rJMFF005O21+ GCTGGTGGGCTTCCTAGGTGGAGCTTTGTTTTTGGTTTTTGCTGGTGCCACGTTCTTTGG
rJMFF020F01+ GCTGGTGGGCTTCCTAGGTGGAGCTTTGTTTTTGGTTTTTGCTGGTGCCACGTTCTTTGG
rJMFF022A17+ GCTGGTGGGCTTCCTAGGTGGAGCTTTGTTTTTGGTTTTTGCTGGTGCCACGTTCTTTGG
rJMFF044G23+ GCTGGTGGGCTTCCTAGGTGGAGCTTTGTTTTTGGTTTTTGCTGGTGCCACGTTCTTTGG
                      ____________________________________________________________
consensus GCTGGTGGGCTTCCTAGGTGGAGCTTTGTTTTTGGTTTTTGCTGGTGCCACGTTCTTTGG
 
. : . : . : . : . : . :
rJMSF011L12+ GGTTTTTTGAGGAAGTTTTGTAAATCACAAGAAGAAAAGGAAGTTCTTTTGTCGAAGACA
rJMSF010B17+ GGTTTTTTGAGGAAGTTTTGTAAATCACAAGAAGAAAAGGAAGTTCTTTTGTCGAAGACA
rJMSF044G22+ GGTTTTTTGAGGAAGTTTTGTAAATCACAAGAAGAAAAGGAAGTTCTTTTGTCGAAGACA
rJMFF004L14+ GGTTTTTTGAGGAAGTTTTGTAAATCACAAGAAGAAAAGGAAGTTCTTTTGTCGAAGACA
rJMSF045L23+ GGTTTTTTGAGGAAGTTTTGTAAATCACAAGAAGAAAAGGAAGTTCTTTTGTCGAAGACA
rJMFF036H05+ GGTTTTTTGAGGAAGTTTTGTAAATCACAAGAAGAAAAGGAAGTTCTTTTGTCGAAGACA
rJMFF005O21+ GGTTTTTTGAGGAAGTTTTGTAAATCACAAGAAGAAAAGGAAGTTCTTTTGTCGAAGACA
rJMFF020F01+ GGTTTTTTGAGGAAGTTTTGTAAATCACAAGAAGAAAAGGAAGTTCTTTTGTCGAAGACA
rJMFF022A17+ GGTTTTTTGAGGAAGTTTTGTAAATCACAAGAAGAAAAGGAAGTTCTTTTGTCGAAGACA
rJMFF044G23+ GGTTTTTTGAGGAAGTTTTGTAAATCCCAAGAAGAAAAGGAAGTTCTTTTGTCGAAGACA
                      ____________________________________________________________
consensus GGTTTTTTGAGGAAGTTTTGTAAATCACAAGAAGAAAAGGAAGTTCTTTTGTCGAAGACA
 
. : . : . : . : . : . :
rJMSF011L12+ AGACATGCTTGCTTAAGGTGAAGACCAGAACATTTACACTTAGAAATCGGGGCACACACA
rJMSF010B17+ AGACATGCTTGCTTAAGGTGAAGACCAGAACATTTACACTTAGAAATCGGGGCACACACA
rJMSF044G22+ AGACATGCTTGCTTAAGGTGAAGACCAGAACATTTACACTTAGAAATCGGGGCACACACA
rJMFF004L14+ AGACATGCTTGCTTAAGGTGAAGACCAGAACATTTACACTTAGAAATCGGGGCACACACA
rJMSF045L23+ AGACATGCTTGCTTAAGGTGAAGACCAGAACATTTACACTTAGAAATCGGGGCACACACA
rJMFF036H05+ AGACATGCTTGCTTAAGGTGAAGACCAGAACATTTACACTTAGAAATCGGGGCACACACA
rJMFF005O21+ AGACATGCTTGCTTAAGGTGAAGACCAGAACATTTACACTTAGAAATCGGGGCACACACA
rJMFF020F01+ AGACATGCTTGCTTAAGGTGAAGACCAGAACATTTACACTTAGAAATCGGGGCACACACA
rJMFF022A17+ AGACATGCTTGCTTAAGGTGAAGACCAGAACATTTACACTTAGAAATCGGGGCACACACA
rJMFF044G23+ AGACATGCTTGCTTAAGGTGAAGACCAGAACATTTACACTTAGAAATCGGGGCACACACA
                      ____________________________________________________________
consensus AGACATGCTTGCTTAAGGTGAAGACCAGAACATTTACACTTAGAAATCGGGGCACACACA
 
. : . : . : . : . : . :
rJMSF011L12+ CACGAGAGAACGACTGTTGTTGTATCATACATGAAAGGAAGAAGCAACCATGTTAGAGGC
rJMSF010B17+ CACGAGAGAACGACTGTTGTTGTATCATACATGAAAGGAAGAAGCAACCATGTTAGAGGC
rJMSF044G22+ CACGAGAGAACGACTGTTGTTGTATCATACATGAAAGGAAGAAGCAACCATGTTAGAGGC
rJMFF004L14+ CACGAGAGAACGACTGTTGTTGTATCATACATGAAGGGAAGAAGCAACCATGTTAGAGGC
rJMSF045L23+ CACGAGAGAACGACTGTTGTTGTATCATACATGAAAGGAAGAAGCAACCATGTTAGAGGC
rJMFF036H05+ CACGAGAGAACGACTGTTGTTGTATCATACATGAAAGGAAGAAGCAACCATGTTAGAGGC
rJMFF005O21+ CACGAGAGAACGACTGTTGTTGTATCATACATGAAAGGAAGAAGCAACCATGTTAGAGGC
rJMFF020F01+ CACGAGAGAACGACTGTTGTTGTATCATACATGAAAGGAAGAAGCAACCATGTTAGAGGC
rJMFF022A17+ CACGAGAGAACGACTGTTGTTGTATCATACATGAAAGGAAGAAGCAACCATGTTAGAGGC
rJMFF044G23+ CACGAGAGAACGACTGTTGTTGTATCATCCATGAAAGGAAGAAGCACCCATGTTAGAGGC
                      ____________________________________________________________
consensus CACGAGAGAACGACTGTTGTTGTATCATACATGAAAGGAAGAAGCAACCATGTTAGAGGC
 
. : . : . : . : . : . :
rJMSF011L12+ AATTTAGGACATG
rJMSF010B17+ AATTTAGGACATGTATACCT
rJMSF044G22+ AATTTAGGACATGTATACCTTCACATACTCCCCAACTGTCTTTTGACACAGTTCAT
rJMFF004L14+ AATTTAGGACATGTATACCTTCACATACTCCCCAACTGTCTTTTGACACAGTTCATGTTT
rJMSF045L23+ AATTTAGGACATGTATACCTTCACATACTCCCCAA
rJMFF036H05+ AATTTAGGACATGTATACCTTCACATACTCCCCAACTGTCTTTTGACACAGTTCATGTTT
rJMFF005O21+ AATTTAGGACATGTATACCTTCACATACTCCCCAACTGTCTTTTGACACAGTTCATGTTT
rJMFF020F01+ AATTTAGGACATGTATACCTTCACATACTCCCCAACTGTCTTTTGACACAGTTCAT
rJMFF022A17+ AATTTAGGACATGTATACCTTCACATACTCCCCAACTGTCTTTTGACACAGTTCATGTTT
rJMFF044G23+ AATTTAGGACATGTATACCTTCACATACTCCCCAACTGTTTTTTGACACAGTTCATGTTT
                      ____________________________________________________________
consensus AATTTAGGACATGTATACCTTCACATACTCCCCAACTGTCTTTTGACACAGTTCATGTTT
 
. : . : . : . : . : . :
rJMFF004L14+ CTGATATCA
rJMFF036H05+ CTGATATCATAAATCTGAGTTC
rJMFF005O21+ CTGATATCATAAATCTGAGTTCCTTATTTATTGAATGTTGGAAATGGGCTGATATT
rJMFF022A17+ CTGATATCATAAATCTGAGTTCCTTATTTATTGAATGTTGGAAATGGGCTGATATTTGTT
rJMFF044G23+ CTGATATCATAAATCTGAGTTCCTTATTTATTGAATGTTGGAAATGGGCTGATATTTGTT
                      ____________________________________________________________
consensus CTGATATCATAAATCTGAGTTCCTTATTTATTGAATGTTGGAAATGGGCTGATATTTGTT
 
. : . : . : . : . : . :
rJMFF022A17+ AGTTCATGTTCTGTTTGATGTTTTAGTCAATAATAAGGAAGCCAATTATTGTATGTACTA
rJMFF044G23+ AGTTCATGTTCTGTTTGATGTTTTAGTCAATAATAAGGAAGCCAATTATTGTATGTACTA
                      ____________________________________________________________
consensus AGTTCATGTTCTGTTTGATGTTTTAGTCAATAATAAGGAAGCCAATTATTGTATGTACTA
 
. : . : . : . : . : . :
rJMFF022A17+ AAGAACTAACAGCATGGTTATCATAAAATAGATCAGGGAT
rJMFF044G23+ AAGAACTAACAGCATGGTTATCATAAAATAGATCAGGGATGGAATAACATTCCTATAAAT
                      ____________________________________________________________
consensus AAGAACTAACAGCATGGTTATCATAAAATAGATCAGGGATGGAATAACATTCCTATAAAT