Contig 005516:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004L14Sequence476006691 (11)ref|XP_009771287.1|3e-15PREDICTED: GDT1-like protein 2, chloroplastic isoform X2 [Nicotiana sylvestris]717005516 (10)ref|XP_004247813.1|4e-78PREDICTED: GDT1-like protein 2, chloroplastic [Solanum lycopersicum]
JMFF005O21Sequence491006691 (11)ref|XP_009618080.1|4e-29PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis]672005516 (10)ref|XP_002518164.1|3e-55Transmembrane protein TPARL, putative [Ricinus communis] gb|EEF44297.1| Transmem
JMFF020F01Sequence507006691 (11)ref|XP_009618080.1|1e-29PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis]662005516 (10)ref|XP_010023776.1|7e-41PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Eucalyptus grandis] g
JMFF022A17Sequence571006691 (11)ref|XP_009618080.1|2e-47PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis]729005516 (10)ref|XP_010023776.1|1e-45PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Eucalyptus grandis] g
JMFF036H05Sequence506006691 (11)ref|XP_009618080.1|3e-30PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis]732005516 (10)ref|XP_004247813.1|1e-78PREDICTED: GDT1-like protein 2, chloroplastic [Solanum lycopersicum]
JMFF044G23Sequence642006691 (11)ref|XP_009618080.1|7e-61PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis]576005516 (10)ref|XP_002304693.2|1e-08hypothetical protein POPTR_0003s17320g [Populus trichocarpa] gb|EEE79672.2| hypo
JMSF010B17Sequence257006691 (11)736005516 (10)ref|XP_004247813.1|8e-90PREDICTED: GDT1-like protein 2, chloroplastic [Solanum lycopersicum]
JMSF011L12Sequence352006691 (11)ref|XP_009618080.1|5e-05PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis]702005516 (10)ref|XP_004247813.1|5e-88PREDICTED: GDT1-like protein 2, chloroplastic [Solanum lycopersicum]
JMSF044G22Sequence768006691 (11)ref|XP_009618080.1|2e-71PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis]747005516 (10)ref|XP_004247813.1|9e-88PREDICTED: GDT1-like protein 2, chloroplastic [Solanum lycopersicum]
JMSF045L23Sequence759006691 (11)ref|XP_009618080.1|1e-60PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis]683005516 (10)ref|XP_004247813.1|3e-78PREDICTED: GDT1-like protein 2, chloroplastic [Solanum lycopersicum]

Alignment

This contig is upended


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rJMSF011L12+                                         GGATCAATGGGTGCTCTTTCACTTATGAC
rJMSF010B17+              TGATGAAGTATTGGTCAGGTTCTTCTGGGATCAATGGGTGCTCTTTCACTTATGAC
rJMSF044G22+                                       TGGGATCAATGGGTGCTCTTTCACTTATGAC
                      ____________________________________________________________
consensus                 TGATGAAGTATTGGTCAGGTTCTTCTGGGATCAATGGGTGCTCTTTCACTTATGAC
 
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rJMSF011L12+          CATCTTCTCTGTCGTAATAGGAAGGATCTTTCATTCTGTGCCAGCACAGTTCCAAACAAC
rJMSF010B17+          CATCTTCTCTGTCGTAATAGGAAGGATCTTTCATTCTGTGCCAGCACAGTTCCAAACAAC
rJMSF044G22+          CATCTTCTCTGTCGTAATAGGAAGGATCTTTCATTCTGTGCCAGCACAGTTCCAAACAAC
rJMFF004L14+                      CGTAATAGGAAGGATCTTTCATTCTGTGCCAGCACAGTTCCAAACAAC
rJMSF045L23+                      CGTAATAGGAAGGATCTTTCATTCTGTGCCAGCACAGTTCCAAACAAC
rJMFF036H05+                    GTCGTAATAGGAAGGATCTTTCATTCTGTGCCAGCACAGTTCCAAACAAC
                      ____________________________________________________________
consensus             CATCTTCTCTGTCGTAATAGGAAGGATCTTTCATTCTGTGCCAGCACAGTTCCAAACAAC
 
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rJMSF011L12+          CTTGCCGATTGGAGAGTATGCAGCAATAGCACTTCTAGTATTCTTTGGCCTCAAGTCAAT
rJMSF010B17+          CTTGCCGATTGGAGAGTATGCAGCAATAGCACTTCTAGTATTCTTTGGCCTCAAGTCAAT
rJMSF044G22+          CTTGCCGATTGGAGAGTATGCAGCAATAGCACTTCTAGTATTCTTTGGCCTCAAGTCAAT
rJMFF004L14+          CTTGCCGATTGGAGAGTATGCAGCAATAGCACTTCTAGTATTCTTTGGCCTCAAGTCAAT
rJMSF045L23+          CTTGCCGATTGGAGAGTATGCAGCAATAGCACTTCTAGTATTCTTTGGCCTCAAGTCAAT
rJMFF036H05+          CTTGCCGATTGGAGAGTATGCAGCAATAGCACTTCTAGTATTCTTTGGCCTCAAGTCAAT
rJMFF005O21+                                                      TTGGCCTCAAGTCAAT
                      ____________________________________________________________
consensus             CTTGCCGATTGGAGAGTATGCAGCAATAGCACTTCTAGTATTCTTTGGCCTCAAGTCAAT
 
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rJMSF011L12+          CAAAGACGCGTGGGAACTTCCATCTGAGGAGGTTAAAACAGGTGATGAATACGTTGAGGC
rJMSF010B17+          CAAAGACGCGTGGGAACTTCCATCTGAGGAGGTTAAAACAGGTGATGAATACGTTGAGGC
rJMSF044G22+          CAAAGACGCGTGGGAACTTCCATCTGAGGAGGTTAAAACAGGTGATGAATACGTTGAGGC
rJMFF004L14+          CAAAGACGCGTGGGAACTTCCGTCTGAGGAGGTTAAAACAGGTGATGAATACGTTGAGGC
rJMSF045L23+          CAAAGACGCGTGGGAACTTCCATCTGAGGAGGTTAAAACAGGTGATGAATACGTTGAGGC
rJMFF036H05+          CAAAGACGCGTGGGAACTTCCATCTGAGGAGGTTAAAACAGGTGATGAATACGTTGAGGC
rJMFF005O21+          CAAAGACGCGTGGGAACTTCCATCTGAGGAGGTTAAAACAGGTGATGAATACGTTGAGGC
rJMFF022A17+                                         GTTAAAACAGGTGATGAATACGTTGAGGC
                      ____________________________________________________________
consensus             CAAAGACGCGTGGGAACTTCCATCTGAGGAGGTTAAAACAGGTGATGAATACGTTGAGGC
 
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rJMSF011L12+          TGAGGAACTTGTGAAGGAAAAGGCTTCAAAGCGACTCTCGAATCCATTTGAAATTCTGTG
rJMSF010B17+          TGAGGAACTTGTGAAGGAAAAGGCTTCAAAGCGACTCTCGAATCCATTTGAAATTCTGTG
rJMSF044G22+          TGAGGAACTTGTGAAGGAAAAGGCTTCAAAGCGACTCTCGAATCCATTTGAAATTCTGTG
rJMFF004L14+          TGAGGAACTTGTGAAGGAAAAGGCTTCAAAGCGACTCTCGAATCCATTTGAAATTCTGTG
rJMSF045L23+          TGAGGAACTTGTGAAGGAAAAGGCTTCAAAGCGACTCTCGAATCCATTTGAAATTCTGTG
rJMFF036H05+          TGAGGAACTTGTGAAGGAAAAGGCTTCAAAGCGACTCTCGAATCCATTTGAAATTCTGTG
rJMFF005O21+          TGAGGAACTTGTGAAGGAAAAGGCTTCAAAGCGACTCTCGAATCCATTTGAAATTCTGTG
rJMFF020F01+                              AGGCTTCAAAGCGACTCTCGAATCCATTTGAAATTCTGTG
rJMFF022A17+          TGAGGAACTTGTGAAGGAAAAGGCTTCAAAGCGACTCTCGAATCCATTTGAAATTCTGTG
                      ____________________________________________________________
consensus             TGAGGAACTTGTGAAGGAAAAGGCTTCAAAGCGACTCTCGAATCCATTTGAAATTCTGTG
 
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rJMSF011L12+          GAAGTCATTCAGCCTTGTATTTTTTGCTGAATGGGGAGACCGCTCTATGCTTGCAACAAT
rJMSF010B17+          GAAGTCATTCAGCCTTGTATTTTTTGCTGAATGGGGAGACCGCTCTATGCTTGCAACAAT
rJMSF044G22+          GAAGTCATTCAGCCTTGTATTTTTTGCTGAATGGGGAGACCGCTCTATGCTTGCAACAAT
rJMFF004L14+          GAAGTCATTCAGCCTTGTATTTTTTGCTGAATGGGGAGACCGCTCTATGCTTGCAACAAT
rJMSF045L23+          GAAGTCATTCAGCCTTGTATTTTTTGCTGAATGGGGAGACCGCTCTATGCTTGCAACAAT
rJMFF036H05+          GAAGTCATTCAGCCTTGTATTTTTTGCTGAATGGGGAGACCGCTCTATGCTTGCAACAAT
rJMFF005O21+          GAAGTCATTCAGCCTTGTATTTTTTGCTGAATGGGGAGACCGCTCTATGCTTGCAACAAT
rJMFF020F01+          GAAGTCATTCAGCCTTGTATTTTTTGCTGAATGGGGAGACCGCTCTATGCTTGCAACAAT
rJMFF022A17+          GAAGTCATTCAGCCTTGTATTTTTTGCTGAATGGGGAGACCGCTCTATGCTTGCAACAAT
                      ____________________________________________________________
consensus             GAAGTCATTCAGCCTTGTATTTTTTGCTGAATGGGGAGACCGCTCTATGCTTGCAACAAT
 
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rJMSF011L12+          AGCTTTGGGCGCGGCACAGTCTCCATGGGGAGTTGCAAGTGGTGCTATTGCTGGACACTT
rJMSF010B17+          AGCTTTGGGCGCGGCACAGTCTCCATGGGGAGTTGCAAGTGGTGCTATTGCTGGACACTT
rJMSF044G22+          AGCTTTGGGCGCGGCACAGTCTCCATGGGGAGTTGCAAGTGGTGCTATTGCTGGACACTT
rJMFF004L14+          AGCTTTGGGCGCGGCACAGTCTCCATGGGGAGTTGCAAGTGGTGCTATTGCTGGACACTT
rJMSF045L23+          AGCTTTGGGCGCGGCACAGTCTCCATGGGGAGTTGCAAGTGGTGCTATTGCTGGACACTT
rJMFF036H05+          AGCTTTGGGCGCGGCACAGTCTCCATGGGGAGTTGCAAGTGGTGCTATTGCTGGACACTT
rJMFF005O21+          AGCTTTGGGCGCGGCACAGTCTCCATGGGGAGTTGCAAGTGGTGCTATTGCTGGACACTT
rJMFF020F01+          AGCTTTGGGCGCGGCACAGTCTCCATGGGGAGTTGCAAGTGGTGCTATTGCTGGACACTT
rJMFF022A17+          AGCTTTGGGCGCGGCACAGTCTCCATGGGGAGTTGCAAGTGGTGCTATTGCTGGACACTT
rJMFF044G23+                                  ATGGGGAGTTGCAAGTGGTGCTATTGCTGGACACTT
                      ____________________________________________________________
consensus             AGCTTTGGGCGCGGCACAGTCTCCATGGGGAGTTGCAAGTGGTGCTATTGCTGGACACTT
 
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rJMSF011L12+          GGTTGCAACATCTCTCGCAATACTAGGAGGCGCTTTTCTTGCCAACTACATTTCTGAAAA
rJMSF010B17+          GGTTGCAACATCTCTCGCAATACTAGGAGGCGCTTTTCTTGCCAACTACATTTCTGAAAA
rJMSF044G22+          GGTTGCAACATCTCTCGCAATACTAGGAGGCGCTTTTCTTGCCAACTACATTTCTGAAAA
rJMFF004L14+          GGTTGCAACATCTCTCGCAATACTAGGAGGCGCTTTTCTTGCCAACTACATTTCTGAAAA
rJMSF045L23+          GGTTGCAACATCTCTCGCAATACTAGGAGGCGCTTTTCTTGCCAACTACATTTCTGAAAA
rJMFF036H05+          GGTTGCAACATCTCTCGCAATACTAGGAGGCGCTTTTCTTGCCAACTACATTTCTGAAAA
rJMFF005O21+          GGTTGCAACATCTCTCGCAATACTAGGAGGCGCTTTTCTTGCCAACTACATTTCTGAAAA
rJMFF020F01+          GGTTGCAACATCTCTCGCAATACTAGGAGGCGCTTTTCTTGCCAACTACATTTCTGAAAA
rJMFF022A17+          GGTTGCAACATCTCTCGCAATACTAGGAGGCGCTTTTCTTGCCAACTACATTTCTGAAAA
rJMFF044G23+          GGTTGCAACATCTCTCGCAATACTAGGAGGCGCTTTTCTTGCCAACTACATTTCTGAAAA
                      ____________________________________________________________
consensus             GGTTGCAACATCTCTCGCAATACTAGGAGGCGCTTTTCTTGCCAACTACATTTCTGAAAA
 
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rJMSF011L12+          GCTGGTGGGCTTCCTAGGTGGAGCTTTGTTTTTGGTTTTTGCTGGTGCCACGTTCTTTGG
rJMSF010B17+          GCTGGTGGGCTTCCTAGGTGGAGCTTTGTTTTTGGTTTTTGCTGGTGCCACGTTCTTTGG
rJMSF044G22+          GCTGGTGGGCTTCCTAGGTGGAGCTTTGTTTTTGGTTTTTGCTGGTGCCACGTTCTTTGG
rJMFF004L14+          GCTGGTGGGCTTCCTAGGTGGAGCTTTGTTTTTGGTTTTTGCTGGTGCCACGTTCTTTGG
rJMSF045L23+          GCTGGTGGGCTTCCTAGGTGGAGCTTTGTTTTTGGTTTTTGCTGGTGCCACGTTCTTTGG
rJMFF036H05+          GCTGGTGGGCTTCCTAGGTGGAGCTTTGTTTTTGGTTTTTGCTGGTGCCACGTTCTTTGG
rJMFF005O21+          GCTGGTGGGCTTCCTAGGTGGAGCTTTGTTTTTGGTTTTTGCTGGTGCCACGTTCTTTGG
rJMFF020F01+          GCTGGTGGGCTTCCTAGGTGGAGCTTTGTTTTTGGTTTTTGCTGGTGCCACGTTCTTTGG
rJMFF022A17+          GCTGGTGGGCTTCCTAGGTGGAGCTTTGTTTTTGGTTTTTGCTGGTGCCACGTTCTTTGG
rJMFF044G23+          GCTGGTGGGCTTCCTAGGTGGAGCTTTGTTTTTGGTTTTTGCTGGTGCCACGTTCTTTGG
                      ____________________________________________________________
consensus             GCTGGTGGGCTTCCTAGGTGGAGCTTTGTTTTTGGTTTTTGCTGGTGCCACGTTCTTTGG
 
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rJMSF011L12+          GGTTTTTTGAGGAAGTTTTGTAAATCACAAGAAGAAAAGGAAGTTCTTTTGTCGAAGACA
rJMSF010B17+          GGTTTTTTGAGGAAGTTTTGTAAATCACAAGAAGAAAAGGAAGTTCTTTTGTCGAAGACA
rJMSF044G22+          GGTTTTTTGAGGAAGTTTTGTAAATCACAAGAAGAAAAGGAAGTTCTTTTGTCGAAGACA
rJMFF004L14+          GGTTTTTTGAGGAAGTTTTGTAAATCACAAGAAGAAAAGGAAGTTCTTTTGTCGAAGACA
rJMSF045L23+          GGTTTTTTGAGGAAGTTTTGTAAATCACAAGAAGAAAAGGAAGTTCTTTTGTCGAAGACA
rJMFF036H05+          GGTTTTTTGAGGAAGTTTTGTAAATCACAAGAAGAAAAGGAAGTTCTTTTGTCGAAGACA
rJMFF005O21+          GGTTTTTTGAGGAAGTTTTGTAAATCACAAGAAGAAAAGGAAGTTCTTTTGTCGAAGACA
rJMFF020F01+          GGTTTTTTGAGGAAGTTTTGTAAATCACAAGAAGAAAAGGAAGTTCTTTTGTCGAAGACA
rJMFF022A17+          GGTTTTTTGAGGAAGTTTTGTAAATCACAAGAAGAAAAGGAAGTTCTTTTGTCGAAGACA
rJMFF044G23+          GGTTTTTTGAGGAAGTTTTGTAAATCCCAAGAAGAAAAGGAAGTTCTTTTGTCGAAGACA
                      ____________________________________________________________
consensus             GGTTTTTTGAGGAAGTTTTGTAAATCACAAGAAGAAAAGGAAGTTCTTTTGTCGAAGACA
 
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rJMSF011L12+          AGACATGCTTGCTTAAGGTGAAGACCAGAACATTTACACTTAGAAATCGGGGCACACACA
rJMSF010B17+          AGACATGCTTGCTTAAGGTGAAGACCAGAACATTTACACTTAGAAATCGGGGCACACACA
rJMSF044G22+          AGACATGCTTGCTTAAGGTGAAGACCAGAACATTTACACTTAGAAATCGGGGCACACACA
rJMFF004L14+          AGACATGCTTGCTTAAGGTGAAGACCAGAACATTTACACTTAGAAATCGGGGCACACACA
rJMSF045L23+          AGACATGCTTGCTTAAGGTGAAGACCAGAACATTTACACTTAGAAATCGGGGCACACACA
rJMFF036H05+          AGACATGCTTGCTTAAGGTGAAGACCAGAACATTTACACTTAGAAATCGGGGCACACACA
rJMFF005O21+          AGACATGCTTGCTTAAGGTGAAGACCAGAACATTTACACTTAGAAATCGGGGCACACACA
rJMFF020F01+          AGACATGCTTGCTTAAGGTGAAGACCAGAACATTTACACTTAGAAATCGGGGCACACACA
rJMFF022A17+          AGACATGCTTGCTTAAGGTGAAGACCAGAACATTTACACTTAGAAATCGGGGCACACACA
rJMFF044G23+          AGACATGCTTGCTTAAGGTGAAGACCAGAACATTTACACTTAGAAATCGGGGCACACACA
                      ____________________________________________________________
consensus             AGACATGCTTGCTTAAGGTGAAGACCAGAACATTTACACTTAGAAATCGGGGCACACACA
 
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rJMSF011L12+          CACGAGAGAACGACTGTTGTTGTATCATACATGAAAGGAAGAAGCAACCATGTTAGAGGC
rJMSF010B17+          CACGAGAGAACGACTGTTGTTGTATCATACATGAAAGGAAGAAGCAACCATGTTAGAGGC
rJMSF044G22+          CACGAGAGAACGACTGTTGTTGTATCATACATGAAAGGAAGAAGCAACCATGTTAGAGGC
rJMFF004L14+          CACGAGAGAACGACTGTTGTTGTATCATACATGAAGGGAAGAAGCAACCATGTTAGAGGC
rJMSF045L23+          CACGAGAGAACGACTGTTGTTGTATCATACATGAAAGGAAGAAGCAACCATGTTAGAGGC
rJMFF036H05+          CACGAGAGAACGACTGTTGTTGTATCATACATGAAAGGAAGAAGCAACCATGTTAGAGGC
rJMFF005O21+          CACGAGAGAACGACTGTTGTTGTATCATACATGAAAGGAAGAAGCAACCATGTTAGAGGC
rJMFF020F01+          CACGAGAGAACGACTGTTGTTGTATCATACATGAAAGGAAGAAGCAACCATGTTAGAGGC
rJMFF022A17+          CACGAGAGAACGACTGTTGTTGTATCATACATGAAAGGAAGAAGCAACCATGTTAGAGGC
rJMFF044G23+          CACGAGAGAACGACTGTTGTTGTATCATCCATGAAAGGAAGAAGCACCCATGTTAGAGGC
                      ____________________________________________________________
consensus             CACGAGAGAACGACTGTTGTTGTATCATACATGAAAGGAAGAAGCAACCATGTTAGAGGC
 
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rJMSF011L12+          AATTTAGGACATG                                               
rJMSF010B17+          AATTTAGGACATGTATACCT                                        
rJMSF044G22+          AATTTAGGACATGTATACCTTCACATACTCCCCAACTGTCTTTTGACACAGTTCAT    
rJMFF004L14+          AATTTAGGACATGTATACCTTCACATACTCCCCAACTGTCTTTTGACACAGTTCATGTTT
rJMSF045L23+          AATTTAGGACATGTATACCTTCACATACTCCCCAA                         
rJMFF036H05+          AATTTAGGACATGTATACCTTCACATACTCCCCAACTGTCTTTTGACACAGTTCATGTTT
rJMFF005O21+          AATTTAGGACATGTATACCTTCACATACTCCCCAACTGTCTTTTGACACAGTTCATGTTT
rJMFF020F01+          AATTTAGGACATGTATACCTTCACATACTCCCCAACTGTCTTTTGACACAGTTCAT    
rJMFF022A17+          AATTTAGGACATGTATACCTTCACATACTCCCCAACTGTCTTTTGACACAGTTCATGTTT
rJMFF044G23+          AATTTAGGACATGTATACCTTCACATACTCCCCAACTGTTTTTTGACACAGTTCATGTTT
                      ____________________________________________________________
consensus             AATTTAGGACATGTATACCTTCACATACTCCCCAACTGTCTTTTGACACAGTTCATGTTT
 
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rJMFF004L14+          CTGATATCA                                                   
rJMFF036H05+          CTGATATCATAAATCTGAGTTC                                      
rJMFF005O21+          CTGATATCATAAATCTGAGTTCCTTATTTATTGAATGTTGGAAATGGGCTGATATT    
rJMFF022A17+          CTGATATCATAAATCTGAGTTCCTTATTTATTGAATGTTGGAAATGGGCTGATATTTGTT
rJMFF044G23+          CTGATATCATAAATCTGAGTTCCTTATTTATTGAATGTTGGAAATGGGCTGATATTTGTT
                      ____________________________________________________________
consensus             CTGATATCATAAATCTGAGTTCCTTATTTATTGAATGTTGGAAATGGGCTGATATTTGTT
 
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rJMFF022A17+          AGTTCATGTTCTGTTTGATGTTTTAGTCAATAATAAGGAAGCCAATTATTGTATGTACTA
rJMFF044G23+          AGTTCATGTTCTGTTTGATGTTTTAGTCAATAATAAGGAAGCCAATTATTGTATGTACTA
                      ____________________________________________________________
consensus             AGTTCATGTTCTGTTTGATGTTTTAGTCAATAATAAGGAAGCCAATTATTGTATGTACTA
 
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rJMFF022A17+          AAGAACTAACAGCATGGTTATCATAAAATAGATCAGGGAT                    
rJMFF044G23+          AAGAACTAACAGCATGGTTATCATAAAATAGATCAGGGATGGAATAACATTCCTATAAAT
                      ____________________________________________________________
consensus             AAGAACTAACAGCATGGTTATCATAAAATAGATCAGGGATGGAATAACATTCCTATAAAT