Contig 005513:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF044D11Sequence625013663 (6)ref|XP_011074585.1|164PREDICTED: uncharacterized protein LOC105159245 [Sesamum indicum] ref|XP_0110746642005513 (2)
JMSF011J23Sequence257013663 (6)ref|XP_011074585.1|49.3PREDICTED: uncharacterized protein LOC105159245 [Sesamum indicum] ref|XP_0110746724005513 (2)ref|XP_009758841.1|107PREDICTED: uncharacterized protein LOC104211479 [Nicotiana sylvestris] ref|XP_00

Alignment

This contig is upended


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rJMSF011J23+                                   GGGAAAGCCGCCNAAGAAGCAGAGACTACCACTCA
                      ____________________________________________________________
consensus                                      GGGAAAGCCGCCNAAGAAGCAGAGACTACCACTCA
 
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rJMSF011J23+          GTGTGGCTCGAGTGATGATGAAGAAACNGAAAGAGAGGGAGCAAAAAGAGTTAGAAGAGA
                      ____________________________________________________________
consensus             GTGTGGCTCGAGTGATGATGAAGAAACNGAAAGAGAGGGAGCAAAAAGAGTTAGAAGAGA
 
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rJMSF011J23+          GTTTAATACTAAGGCGATTCGGGGTAAATCATGGCTCTAGCTCTAGAAGAGTTGCTCAAA
                      ____________________________________________________________
consensus             GTTTAATACTAAGGCGATTCGGGGTAAATCATGGCTCTAGCTCTAGAAGAGTTGCTCAAA
 
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rJMSF011J23+          GGCGCAACCCTGAGGATAGGGTACTGAAATCAAGTGTAGGTCACTTCCGGAAGGGTGTGC
rJMFF044D11+                            GGGTACTGAAATCAAGTGTAGGTCACTTCCGGAAGGGTGTGC
                      ____________________________________________________________
consensus             GGCGCAACCCTGAGGATAGGGTACTGAAATCAAGTGTAGGTCACTTCCGGAAGGGTGTGC
 
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rJMSF011J23+          TTGATGTGAAACATCTATTAAAACCCTCTACATCAACTGTCCCTGATGAGAAAAAGTTTG
rJMFF044D11+          TTGATGTGAAACATCTATTAAAACCCTCTACATCAACTGTCCCTGATGAGAAAAAGTTTG
                      ____________________________________________________________
consensus             TTGATGTGAAACATCTATTAAAACCCTCTACATCAACTGTCCCTGATGAGAAAAAGTTTG
 
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rJMSF011J23+          CTCCGCNCAACAAAGGGGGGAAGAAAAATACCGGCAAAAAGAATAAGGGCAAGAAAAAGG
rJMFF044D11+          CTCCGCACAACAAAGGGGGGAAGAAAAATACCGGCAAAAAGAATAAGGGCAAGAAAAAGG
                      ____________________________________________________________
consensus             CTCCGCACAACAAAGGGGGGAAGAAAAATACCGGCAAAAAGAATAAGGGCAAGAAAAAGG
 
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rJMSF011J23+          GTGGTGGTAGGAAGCGCCNCTAGTATGCCTGCTAGGTACACTTCATATTATGTTGGATAA
rJMFF044D11+          GTGGTGGTAGGAAGCGCCACTAGTATGCCTGCTAGGTACACTTCATATTATGTTGGATAA
                      ____________________________________________________________
consensus             GTGGTGGTAGGAAGCGCCACTAGTATGCCTGCTAGGTACACTTCATATTATGTTGGATAA
 
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rJMSF011J23+          AGAACCAGTATTCTGCAGAATAGTCGTTATCTATTGAACCTGGGACATTTAAGGGACTAA
rJMFF044D11+          AGAACCAGTATTCTGCAGAATAGTCGTTATCTATTGAACCTGGGACATTTAAGGGACTAA
                      ____________________________________________________________
consensus             AGAACCAGTATTCTGCAGAATAGTCGTTATCTATTGAACCTGGGACATTTAAGGGACTAA
 
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rJMSF011J23+          CCCATCTATTAGTGTCTCAATTCTATTACTCCAGTGGGAGACTTACTGTCATCTCATTCA
rJMFF044D11+          CCCATCTATTAGTGTCTCAATTCTATTACTCCAGTGGGAGACTTACTGTCATCTCATTCA
                      ____________________________________________________________
consensus             CCCATCTATTAGTGTCTCAATTCTATTACTCCAGTGGGAGACTTACTGTCATCTCATTCA
 
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rJMSF011J23+          GTGGCTTTGGCAAAGTAGTTAAGCTGACATTTCTCATGTTATCAGCTGCAGTGGAGTGAA
rJMFF044D11+          GTGGCTTTGGCAAAGTAGTTAAGCTGACATTTCTCATGTTATCAGCTGCAGTGGAGTGAA
                      ____________________________________________________________
consensus             GTGGCTTTGGCAAAGTAGTTAAGCTGACATTTCTCATGTTATCAGCTGCAGTGGAGTGAA
 
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rJMSF011J23+          TGGAGGGATTGAAGGTGTAGAGGATATGCTTTCATAGTTCAGAACTCAAGTGGAATTAAA
rJMFF044D11+          TGGAGGGATTGAAGGTGTAGAGGATATGCTTTCATAGTTCAGAACTCAAGTGGAATTAAA
                      ____________________________________________________________
consensus             TGGAGGGATTGAAGGTGTAGAGGATATGCTTTCATAGTTCAGAACTCAAGTGGAATTAAA
 
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rJMSF011J23+          GAAGTTCTAAATGAAAAGAATGGATTTAGGA-TTTTTTTTTTCTCTCTTATTTCATTTTG
rJMFF044D11+          GAAGTTTTAAATGAAAAGAATGGATTTAGGATTTTTTTTTTTCTCTCTTATTTCATTTTG
                      ____________________________________________________________
consensus             GAAGTTTTAAATGAAAAGAATGGATTTAGGATTTTTTTTTTTCTCTCTTATTTCATTTTG
 
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rJMSF011J23+          GTTGTCC                                                     
rJMFF044D11+          GTTGTCCTGTATTCAGTTTGAGAATGTATGTTTACCAAACTCATACATTAGTAAAAAAGA
                      ____________________________________________________________
consensus             GTTGTCCTGTATTCAGTTTGAGAATGTATGTTTACCAAACTCATACATTAGTAAAAAAGA
 
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rJMFF044D11+          AATACATGCTCXXXXXXXXXXXXXXXXXXXXXTAAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus             AATACATGCTCNNNNNNNNNNNNNNNNNNNNNTAAAAAAAAAAAAAAAACTCTCCAGGGT