Contig 005508:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043O23Sequence636000244 (7)ref|XP_002515245.1|1e-71ATP-dependent RNA helicase, putative [Ricinus communis] gb|EEF47229.1| ATP-depen299005508 (3)
JMSF005P05Sequence322005450 (8)344005508 (3)ref|XP_004229376.1|5e-18PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Solanu
JMSF029G16Sequence674000244 (7)ref|XP_002515245.1|2e-86ATP-dependent RNA helicase, putative [Ricinus communis] gb|EEF47229.1| ATP-depen769005508 (3)gb|KDP35299.1|1e-125hypothetical protein JCGZ_09458 [Jatropha curcas]

Alignment

This contig is upended


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rJMSF029G16+             GGGAGGCTCAAAAGCTGCAGATGAAGCGAAAGGTCGTTTTAGTCACATTGATGGAGA
                      ____________________________________________________________
consensus                GGGAGGCTCAAAAGCTGCAGATGAAGCGAAAGGTCGTTTTAGTCACATTGATGGAGA
 
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rJMSF029G16+          TCACCTCACGCTGCTGAATGTGTACCATGCTTACAAGCAAAACAAGGAGGATCCACAATG
                      ____________________________________________________________
consensus             TCACCTCACGCTGCTGAATGTGTACCATGCTTACAAGCAAAACAAGGAGGATCCACAATG
 
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rJMSF029G16+          GTGCTATGAGAATTTCGTTAATCATAGGGCTCTCAAGTCTGCAGATAATGTAAGGCAGCA
                      ____________________________________________________________
consensus             GTGCTATGAGAATTTCGTTAATCATAGGGCTCTCAAGTCTGCAGATAATGTAAGGCAGCA
 
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rJMSF029G16+          ACTCTCACGCATTATGACAAGATTCAACCTCAAGCTGTGTAGCACAGACTTCAACAGCCG
                      ____________________________________________________________
consensus             ACTCTCACGCATTATGACAAGATTCAACCTCAAGCTGTGTAGCACAGACTTCAACAGCCG
 
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rJMSF029G16+          TGACTACTATGTCAACATAAGAAAGGCCATGTTAGCTGGATATTTCATGCAGGTGGCTCA
                      ____________________________________________________________
consensus             TGACTACTATGTCAACATAAGAAAGGCCATGTTAGCTGGATATTTCATGCAGGTGGCTCA
 
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rJMSF029G16+          TTTGGAACGTACTGGTCACTATCTGACAGTGAAGGACAATCAAGTGGTTCACTTGCATCC
                      ____________________________________________________________
consensus             TTTGGAACGTACTGGTCACTATCTGACAGTGAAGGACAATCAAGTGGTTCACTTGCATCC
 
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rJMSF029G16+          TTCAAATTGCCTGGATCATAAGCCAGAATGGGTTATATACAATGAATATGTGTTAACAAG
                      ____________________________________________________________
consensus             TTCAAATTGCCTGGATCATAAGCCAGAATGGGTTATATACAATGAATATGTGTTAACAAG
 
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rJMSF005P05+                   CATCCGGACTGNTACTGATATTCGTGGTGAATGGTTGGTTGNTATAGCACC
rJMSF029G16+          CAGGAATTTCATCCGGACTGTTACTGATATTCGTGGTGAATGGTTGGTTGATATAGCACC
                      ____________________________________________________________
consensus             CAGGAATTTCATCCGGACTGTTACTGATATTCGTGGTGAATGGTTGGTTGATATAGCACC
 
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rJMSF005P05+          ACACTATTANGATCTCTCAAATTTCCCCCAGTGTGAAGCAAAGCATGTACTNGATAGACT
rJMSF029G16+          ACACTATTATGATCTCTCAAATTTCCCCCAGTGTGAAGCAAAGCATGTACTTGATAGACT
                      ____________________________________________________________
consensus             ACACTATTATGATCTCTCAAATTTCCCCCAGTGTGAAGCAAAGCATGTACTTGATAGACT
 
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rJMSF005P05+          ATACAAGAAGAGGGAGAGAGATAGAGAGCAAAACAAGAAAAAGAAGTAAAGGGTGTNATG
rJMSF029G16+          ATACAAGAAGAGGGAGAGAGATAGAGAGCAAAACAAGAAAAAGAAGTAAAGGGTGTTATG
rJMFF043O23+             CAAGAAGGGGGGGGGAGATAGGGAGCAAACCAAGAAAAAGAAGTAAAGGGTGTTATG
                      ____________________________________________________________
consensus             ATACAAGAAGAGGGAGAGAGATAGAGAGCAAAACAAGAAAAAGAAGTAAAGGGTGTTATG
 
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rJMSF005P05+          CTTGCAGTGAAGTTCAAAAATTNTTAGTTACTCATGTTGCTCTCATTATTATTCAGGTTT
rJMSF029G16+          CTTGCAGTGAAGTTCAAAAATTTTTAGTTACTCATGTTGCTCTCATTATTATTCAGGTTT
rJMFF043O23+          CTTGCAGTGAAGTTCAAAAATTTTTAGTTACTCATGTTGCTCTCATTATTATTCAGGTTT
                      ____________________________________________________________
consensus             CTTGCAGTGAAGTTCAAAAATTTTTAGTTACTCATGTTGCTCTCATTATTATTCAGGTTT
 
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rJMSF005P05+          TTGCATAAGATAACGATGGGACAGATGGNGTACCATTGTGGAAATGTAGTTTT       
rJMSF029G16+          TTGCATAAGATAA-GATGGGACAGATGGTGTACCATTGTGGAAATGTAGTTTTCTAAATA
rJMFF043O23+          TTGCATAAGATAA-GATGGGACAGATGGTGTCCCATTGGGGAAAAGTAGTTTTTTAAATA
                      ____________________________________________________________
consensus             TTGCATAAGATAA-GATGGGACAGATGGTGTACCATTGTGGAAATGTAGTTTTTTAAATA
 
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rJMSF029G16+          GTTTGGTTATCTCACTTATCTGTATGAATTGACATTCATGTGTT                
rJMFF043O23+          GTTTGGTTATTTCCCTTATCTGTATGAATTGCCATTCATGTGTTTGAAGGATACATTTTG
                      ____________________________________________________________
consensus             GTTTGGTTATTTCCCTTATCTGTATGAATTGCCATTCATGTGTTTGAAGGATACATTTTG
 
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rJMFF043O23+          TTCCAAGTGTTATAAATTTTATTATTACTGAAATAGTAATGTTGTACGTAAATTTTTTTC
                      ____________________________________________________________
consensus             TTCCAAGTGTTATAAATTTTATTATTACTGAAATAGTAATGTTGTACGTAAATTTTTTTC