Contig 005505:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005L11Sequence551006066 (17)gb|ADN92993.2|4e-98lipoxygenase LOX1 [Ipomoea nil]794005505 (7)gb|ADN92993.2|6e-137lipoxygenase LOX1 [Ipomoea nil]
JMFF011D02Sequence438006066 (17)gb|ADN92993.2|8e-67lipoxygenase LOX1 [Ipomoea nil]699005505 (7)gb|ADN92993.2|4e-112lipoxygenase LOX1 [Ipomoea nil]
JMFF016K15Sequence589006066 (17)gb|ADN92993.2|2e-106lipoxygenase LOX1 [Ipomoea nil]768005505 (7)gb|ADN92993.2|6e-114lipoxygenase LOX1 [Ipomoea nil]
JMFF021G17Sequence546006066 (17)gb|ADN92993.2|2e-96lipoxygenase LOX1 [Ipomoea nil]696005505 (7)gb|ADN92993.2|3e-114lipoxygenase LOX1 [Ipomoea nil]
JMFF021L14Sequence606006066 (17)gb|ADN92993.2|6e-109lipoxygenase LOX1 [Ipomoea nil]679005505 (7)gb|ADN92993.2|8e-103lipoxygenase LOX1 [Ipomoea nil]
JMFF043L01Sequence644006066 (17)gb|ADN92993.2|1e-115lipoxygenase LOX1 [Ipomoea nil]635005505 (7)gb|ADN92993.2|2e-81lipoxygenase LOX1 [Ipomoea nil]
JMFS091G01Sequence596005505 (7)gb|ADN92993.2|4e-84lipoxygenase LOX1 [Ipomoea nil]

Alignment

This contig is upended


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rJMFF005L11+                                                          TTGTCGTCCCAT
                      ____________________________________________________________
consensus                                                             TTGTCGTCCCAT
 
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rJMFF005L11+          CAAAACATGGGTACAAGACTACTGCAAGATCTATTACAAATCTGATGACGTGGTTCAGAA
rJMFF016K15+                                                   CTGATGACGTGGTTCAGAA
                      ____________________________________________________________
consensus             CAAAACATGGGTACAAGACTACTGCAAGATCTATTACAAATCTGATGACGTGGTTCAGAA
 
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rJMFF011D02+                                   GGAAGGAGCTGAGAGAGCAAGNACATGGCGATTTG
rJMFF021G17+                                   GGAAGGAGCTGAGAGAGCAAGGACATGGCGATTTG
rJMFF021L14+                                    GAAGGAGCTGAGAGAGCAAGGACATGGCGATTTG
rJMFF005L11+          AGATACTGAACTCCAGGCC--TGGTGGAAGGAGCTGAGAGAGCAAGGACATGGCGATTTG
rJMFF016K15+          AGATACTGAACTCCAGGCCCTGGGTGGAAGGAGCTGAGAGAGCAAGGACATGGCGATTTG
                      ____________________________________________________________
consensus             AGATACTGAACTCCAGGCCCTTGGTGGAAGGAGCTGAGAGAGCAAGGACATGGCGATTTG
 
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rJMFF011D02+          AAAGACAAG-CCGTGGTGGCCAAAAATGCAGACAGTCCAGGAGCTGATCGACTCGTGTGC
rJMFF021G17+          AAAGACAAG-CCGTGGTGGCCAAAAATGCAGACAGTCCAGGAGCTGATCGACTCGTGTGC
rJMFF021L14+          AAAGACAAGCCCGTGGTGGCCAAAAATGCAGACAGTCCAGGAGCTGATCGACTCGTGTGC
rJMFF005L11+          AAAGACAAG-CCGTGGTGGCCAAAAATGCAGACAGTCCAGGAGCTGATCGACTCGTGTGC
rJMFF016K15+          AAAGACAAG-CCGTGGTGGCCAAAAATGCAGACAGTCCAGGAGCTGATCGACTCGTGTGC
                      ____________________________________________________________
consensus             AAAGACAAG-CCGTGGTGGCCAAAAATGCAGACAGTCCAGGAGCTGATCGACTCGTGTGC
 
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rJMFF011D02+          CATTATTATCTGGATAGCCTCTGCACTTCATGCAGCAGTCAACTTTGGTCAATACCCTTA
rJMFF021G17+          CATTATTATCTGGATAGCCTCTGCACTTCATGCAGCAGTCAACTTTGGTCAATACCCTTA
rJMFF021L14+          CATTATTATCTGGATAGCCTCTGCACTTCATGCAGCAGTCAACTTTGGTCAATACCCTTA
rJMFF005L11+          CATTATTATCTGGATAGCCTCTGCACTTCATGCAGCAGTCAACTTTGGTCAATACCCTTA
JMFS091G01-                                 GCACTTCATGCAGCAGTCAACTTTGGTCAATACCCTTA
rJMFF016K15+          CATTATTATCTGGATAGCCTCTGCACTTCATGCAGCAGTCAACTTTGGTCAATACCCTTA
rJMFF043L01+                                   CTTCATGCAGCAGTCAACTTGNGTCAATACCCTTA
                      ____________________________________________________________
consensus             CATTATTATCTGGATAGCCTCTGCACTTCATGCAGCAGTCAACTTTGGTCAATACCCTTA
 
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rJMFF011D02+          TGCTGGTTACCTCCCTAACCGCCCTACATTGAGCCGCAGATTCATGCCTGTGCCTGGAAC
rJMFF021G17+          TGCTGGTTACCTCCCTAACCGCCCTACATTGAGCCGCAGATTCATGCCTGTGCCTGGAAC
rJMFF021L14+          TGCTGGTTACCTCCCTAACCGCCCTACATTGAGCCGCAGATTCATGCCTGTGCCTGGAAC
rJMFF005L11+          TGCTGGTTACCTCCCTAACCGCCCTACATTGAGCCGCAGATTCATGCCTGTGCCTGGAAC
JMFS091G01-           TGCTGGTTACCTCCCTAACCGCCCTACATTGAGCCGCAGATTCATGCCTGTGCCTGGAAC
rJMFF016K15+          TGCTGGTTACCTCCCTAACCGCCCTACATTGAGCCGCAGATTCATGCCTGTGCCTGGAAC
rJMFF043L01+          TGCTGGTTACCTCCCTAACCGCCCTACATTGAGCCGCAGATTCATGCCTGTGCCTGGAAC
                      ____________________________________________________________
consensus             TGCTGGTTACCTCCCTAACCGCCCTACATTGAGCCGCAGATTCATGCCTGTGCCTGGAAC
 
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rJMFF011D02+          AGACGACTATAAGGAGCTTGAGGCTGATCCAGATAAGGTTTTCCTCAAAACAATCACTGC
rJMFF021G17+          AGACGACTATAAGGAGCTTGAGGCTGATCCAGATAAGGTTTTCCTCAAAACAATCACTGC
rJMFF021L14+          AGACGACTATAAGGAGCTTGAGGCTGATCCAGATAAGGTTTTCCTCAAAACAATCACTGC
rJMFF005L11+          AGACGACTATAAGGAGCTTGAGGCTGATCCAGATAAGGTTTTCCTCAAAACAATCACTGC
JMFS091G01-           AGACGACTATAAGGAGCTTGAGGCTGATCCAGATAAGGTTTTCCTCAAAACAATCACTGC
rJMFF016K15+          AGACGACTATAAGGAGCTTGAGGCTGATCCAGATAAGGTTTTCCTCAAAACAATCACTGC
rJMFF043L01+          AGACGACTATAAGGAGCTTGAGGCTGATCCAGATAAGGTTTTCCTCAAAACAATCACTGC
                      ____________________________________________________________
consensus             AGACGACTATAAGGAGCTTGAGGCTGATCCAGATAAGGTTTTCCTCAAAACAATCACTGC
 
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rJMFF011D02+          TCAGTTGCAGACTCTCCTTGGTGTTTCCCTTATTGAAATTCTGTCGAGGCATGCTTCGGA
rJMFF021G17+          TCAGTTGCAGACTCTCCTTGGTGTTTCCCTTATTGAAATTCTGTCGAGGCATGCTTCGGA
rJMFF021L14+          TCAGTTGCAGACTCTCCTTGGTGTTTCCCTTATTGAAATTCTGTCGAGGCATGCTTCGGA
rJMFF005L11+          TCAGTTGCAGACTCTCCTTGGTGTTTCCCTTATTGAAATTCTGTCGAGGCATGCTTCGGA
JMFS091G01-           TCAGTTGCAGACTCTCCTTGGTGTTTCCCTTATTGAAATTCTGTCGAGGCATGCTTCGGA
rJMFF016K15+          TCAGTTGCAGACTCTCCTTGGTGTTTCCCTTATTGAAATTCTGTCGAGGCATGCTTCGGA
rJMFF043L01+          TCAGTTGCAGACTCTCCTTGGTGTTTCCCTTATTGAAATTCTGTCGAGGCATGCTTCGGA
                      ____________________________________________________________
consensus             TCAGTTGCAGACTCTCCTTGGTGTTTCCCTTATTGAAATTCTGTCGAGGCATGCTTCGGA
 
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rJMFF011D02+          TGAGGTGTACCTAGGGAAAAGAGAGTGCCCCGAGTGGACAAAGGACAAGGAAGCACTAGA
rJMFF021G17+          TGAGGTGTACCTAGGGAAAAGAGAGTGCCCCGAGTGGACAAAGGACAAGGAAGCACTAGA
rJMFF021L14+          TGAGGTGTACCTAGGGAAAAGAGAGTGCCCCGAGTGGACAAAGGACAAGGAAGCACTAGA
rJMFF005L11+          TGAGGTGTACCTAGGGAAAAGAGAGTGCCCCGAGTGGACAAAGGACAAGGAAGCACTAGA
JMFS091G01-           TGAGGTGTACCTAGGGAAAAGAGAGTGCCCCGAGTGGACAAAGGACAAGGAAGCACTAGA
rJMFF016K15+          TGAGGTGTACCTAGGGAAAAGAGAGTGCCCCGAGTGGACAAAGGACAAGGAAGCACTAGA
rJMFF043L01+          TGAGGTGTACCTAGGGAAAAGAGAGTGCCCCGAGTGGACAAAGGACAAGGAAGCACTAGA
                      ____________________________________________________________
consensus             TGAGGTGTACCTAGGGAAAAGAGAGTGCCCCGAGTGGACAAAGGACAAGGAAGCACTAGA
 
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rJMFF011D02+          TGCATTTGCACGATTTGGAACAAAGCTCGGTGAAATCGAGGACAGCATAATGAAAATGAA
rJMFF021G17+          TGCATTTGCACGATTTGGAACAAAGCTCGGTGAAATCGAGGACAGCATAATGAAAATGAA
rJMFF021L14+          TGCATTTGCACGATTTGGAACAAAGCTCGGTGAAATCGAGGACAGCATAATGAAAATGAA
rJMFF005L11+          TGCATTTGCACGATTTGGAACAAAGCTCGGTGAAATCGAGGACAGCATAATGAAAATGAA
JMFS091G01-           TGCATTTGCACGATTTGGAACAAAGCTCGGTGAAATCGAGGACAGCATAATGAAAATGAA
rJMFF016K15+          TGCATTTGCACGATTTGGAACAAAGCTCGGTGAAATCGAGGACAGCATAATGAAAATGAA
rJMFF043L01+          TGCATTTGCACGATTTGGAACAAAGCTCGGTGAAATCGAGGACAGCATAATGAAAATGAA
                      ____________________________________________________________
consensus             TGCATTTGCACGATTTGGAACAAAGCTCGGTGAAATCGAGGACAGCATAATGAAAATGAA
 
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rJMFF011D02+          CACCGAGGGAAAACTGAAAAACAGGACAGGGCCTGTGAAAATGCCATACACCCTACTCTT
rJMFF021G17+          CACCGAGGGAAAACTGAAAAACAGGACAGGGCCTGTGAAAATGCCATACACCCTACTCTT
rJMFF021L14+          CACCGAGGGAAAACTGAAAAACAGGACAGGGCCTGTGAAAATGCCATACACCCTACTCTT
rJMFF005L11+          CACCGAGGGAAAACTGAAAAACAGGACAGGGCCTGTGAAAATGCCATACACCCTACTCTT
JMFS091G01-           CACCGAGGGAAAACTGAAAAACAGGACAGGGCCTGTGAAAATGCCATACACCCTACTCTT
rJMFF016K15+          CACCGAGGGAAAACTGAAAAACAGGACAGGGCCTGTGAAAATGCCATACACCCTACTCTT
rJMFF043L01+          CACCGAGGGAAAACTGAAAAACAGGACAGGGCCTGTGAAAATGCCATACACCCTACTCTT
                      ____________________________________________________________
consensus             CACCGAGGGAAAACTGAAAAACAGGACAGGGCCTGTGAAAATGCCATACACCCTACTCTT
 
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rJMFF011D02+          CCCTACAAGTGAAGCTGGTCTCACTGGCAAAGGCATTCCCAACAGTGTTTCCATCTAAAG
rJMFF021G17+          CCCTACAAGTGAAGCTGGTCTCACTGGCAAAGGCATTCCCAACAGTGTTTCCATCTAAAG
rJMFF021L14+          CCCTACAAGTGAAGCTGGTCTCACTGGCAAAGGCATTCCCAACAGTGTTTCCATCTAAAG
rJMFF005L11+          CCCTACAAGTGAAGCTGGTCTCACTGGCAAAGGCATTCCCAACAGTGTTTCCATCTAAAG
JMFS091G01-           CCCTACAAGTGAAGCTGGTCTCACTGGCAAAGGCATTCCCAACAGTGTTTCCATCTAAAG
rJMFF016K15+          CCCTACAAGTGAAGCTGGTCTCACTGGCAAAGGCATTCCCAACAGTGTTTCCATCTAAAG
rJMFF043L01+          CCCTACAAGTGAAGCTGGTCTCACTGGCAAAGGCATTCCCAACAGTGTTTCCATCTAAAG
                      ____________________________________________________________
consensus             CCCTACAAGTGAAGCTGGTCTCACTGGCAAAGGCATTCCCAACAGTGTTTCCATCTAAAG
 
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rJMFF011D02+          CTTCTCTCTCAATTGAGTGTGATTTCATTTGGATGGTTGATATGTGTAGTGGTTTTGTAT
rJMFF021G17+          CTTCTCTCTCAATTGAGTGTGATTTCATTTGGATGGTTGATATGTGTAGTGGTTTTGTAT
rJMFF021L14+          CTTCTCTCTCAATTGAGTGTGATTTCATTTGGATGGTTGATATGTGTAGTGGTTTTGTAT
rJMFF005L11+          CTTCTCTCTCAATTGAGTGTGATTTCATTTGGATGGTTGATATGTGTAGTGGTTTTGTAT
JMFS091G01-           CTTCTCTCTCAATTGAGTGTGATTTCATTTGGATGGTTGATATGTGTAGTGGTTTTGTAT
rJMFF016K15+          CTTCTCTCTCAATTGAGTGTGATTTCATTTGGATGGTTGATATGTGTAGTGGTTTTGTAT
rJMFF043L01+          CTTCTCTCTCAATTGAGTGTGATTTCATTTGGATGGTTGATATGTGTAGTGGTTTTGTAT
                      ____________________________________________________________
consensus             CTTCTCTCTCAATTGAGTGTGATTTCATTTGGATGGTTGATATGTGTAGTGGTTTTGTAT
 
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rJMFF011D02+          GAATAAATCTGCCTACCGAAACCGTGTATGTTGGTGTGTGATTCATCATGTTATTAATAA
rJMFF021G17+          GAATAAATCTGCCTCCCGAAACCGTGTATGTTGGTGTGTGATTCATCA            
rJMFF021L14+          GAATAAATCTGCCTCCCGAAACCGTGTATGTTGGTGTGTGATTCA               
rJMFF005L11+          GAATAAATCTGCCTCCCGAAACCGTGTATGTTGGTGTGTGATTCATCATGTTATTAATAA
JMFS091G01-           GAATAAATCTGCCTCCCGAAACCGTGTATGTTGGTGTGTGATTCATCATGTTATTAATAA
rJMFF016K15+          GAATAAATCTGCCTCCCGAAACCGTGTATGTTGGTGTGTGATTCATCATGTTATTAATAA
rJMFF043L01+          GAATAAATCTGCCTCCCGAAACCGTGTATGTTGGTGTGTGATTCATCATGTTATTAATAA
                      ____________________________________________________________
consensus             GAATAAATCTGCCTCCCGAAACCGTGTATGTTGGTGTGTGATTCATCATGTTATTAATAA
 
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rJMFF011D02+          ATACC                                                       
rJMFF005L11+          ATACC                                                       
JMFS091G01-           ATACCATCCTCTGCATTG                                          
rJMFF016K15+          ATACCATCCTCTGCATTGTAA                                       
rJMFF043L01+          ATACCATCCTCTGCATTGTAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             ATACCATCCTCTGCATTGTAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG