Contig 005502:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005P13Sequence476003087 (6)ref|XP_009589888.1|3e-33PREDICTED: uncharacterized zinc finger protein At4g06634 [Nicotiana tomentosifo744005502 (6)gb|KJB16120.1|2e-53hypothetical protein B456_002G214700 [Gossypium raimondii]
JMFF008M23Sequence573003087 (6)gb|EYU26504.1|3e-63hypothetical protein MIMGU_mgv1a007778mg [Erythranthe guttata]735005502 (6)gb|KJB16120.1|1e-40hypothetical protein B456_002G214700 [Gossypium raimondii]
JMFF011H02Sequence476003087 (6)ref|XP_009589888.1|3e-33PREDICTED: uncharacterized zinc finger protein At4g06634 [Nicotiana tomentosifo746005502 (6)gb|KJB16119.1|7e-56hypothetical protein B456_002G214700 [Gossypium raimondii]
JMFF043A01Sequence639003087 (6)gb|EYU26504.1|2e-78hypothetical protein MIMGU_mgv1a007778mg [Erythranthe guttata]542005502 (6)ref|XP_006387776.1|3e-23hypothetical protein POPTR_0590s00200g [Populus trichocarpa] gb|ERP46690.1| hypo
JMFF043A05Sequence636003087 (6)gb|EYU26504.1|5e-75hypothetical protein MIMGU_mgv1a007778mg [Erythranthe guttata]541005502 (6)ref|XP_006387776.1|9e-24hypothetical protein POPTR_0590s00200g [Populus trichocarpa] gb|ERP46690.1| hypo
JMSF007L18Sequence378003087 (6)ref|XP_006350548.1|2e-25PREDICTED: uncharacterized zinc finger protein At4g06634-like [Solanum tuberosu776005502 (6)gb|KJB16120.1|1e-67hypothetical protein B456_002G214700 [Gossypium raimondii]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF007L18+ CAGAATGTGGAAAGCGATATGCACACGAGTACNAGCT
                      ____________________________________________________________
consensus CAGAATGTGGAAAGCGATATGCACACGAGTACNAGCT
 
. : . : . : . : . : . :
rJMSF007L18+ AAAAAATCACATTTCAACTACTCATCAGAAGAACGGCACACCAGAAGTGGCAAAGTATGT
rJMFF005P13+ TCATCAGAAGAACGGCACACCAGAAGTGGCAAAGTATGT
rJMFF008M23+ TCATCAGAAGAACGGCACACCAGAAGTGGCAAAGTATGT
rJMFF011H02+ TCATCAGAAGAACGGCACACCAGAAGTGGCAAAGTATGT
                      ____________________________________________________________
consensus AAAAAATCACATTTCAACTACTCATCAGAAGAACGGCACACCAGAAGTGGCAAAGTATGT
 
. : . : . : . : . : . :
rJMSF007L18+ CCAGCATATAGAAAAGCCGACCAAAGCACCAAAATCTTCTGGAGGAGCATATGCCTCAGC
rJMFF005P13+ CCAGCATATAGAAAAGCCGACCAAAGCACCAAAATCTTNTGGAGGAGCATATGCCTCAGC
rJMFF008M23+ CCAGCATATAGAAAAGCCGACCAAAGCACCAAAATCTTCTGGAGGAGCGTATGCCTCAGC
rJMFF011H02+ CCAGCATATAGAAAAGCCGACCAAAGCACCAAAATCTTCTGGAGGAGCATATGCCTCAGC
                      ____________________________________________________________
consensus CCAGCATATAGAAAAGCCGACCAAAGCACCAAAATCTTCTGGAGGAGCATATGCCTCAGC
 
. : . : . : . : . : . :
rJMSF007L18+ TTCATCCGACCGCCCTTACGTCTGTCCATATGAAGGGTGCGATAAAGCTTACATCCACGA
rJMFF005P13+ TTCATCCGACCGCCCTTACGTCTGTCCATATGAAGGGTGCGATAAAGCTTACATCCACGA
rJMFF008M23+ TTCATCCGACCGCCCTTACGTCTGTCCATATGAAGGGTGCGATAAAGCTTACATCCACGA
rJMFF011H02+ TTCATCCGACCGCCCTTACGTCTGTCCATATGAAGGGTGCGATAAAGCTTACATCCACGA
                      ____________________________________________________________
consensus TTCATCCGACCGCCCTTACGTCTGTCCATATGAAGGGTGCGATAAAGCTTACATCCACGA
 
. : . : . : . : . : . :
rJMSF007L18+ ATACAAGCTCAATCTTCATTTGAGGAAAGAACATCCGGGT-CATTTCCCAGACGAGAATG
rJMFF005P13+ ATACAAGCTCAATCTTCATTTGAGGAAAGAACATCCGGGT-CATTTCCCAGACGAGAATG
rJMFF008M23+ ATACAAGCTCAATCTTCATTTGAGGAAAGAACATCCGGGTCCATTTCCCAGACGAGAATG
rJMFF011H02+ ATACAAGCTCAATCTTCATTTGAGGAAAGAACATCCGGGT-CATTTCCCAGACGAGAATG
rJMFF043A05+ GAATG
rJMFF043A01+ TG
                      ____________________________________________________________
consensus ATACAAGCTCAATCTTCATTTGAGGAAAGAACATCCGGGT-CATTTCCCAGACGAGAATG
 
. : . : . : . : . : . :
rJMSF007L18+ CCAAGAATGCTCACCCCCCTGCATCTGCTGCCGTTGAAAATGAGATGGATGAAGAGAGTG
rJMFF005P13+ CCAAGAATGCTCACCCCCCTGCATCTGCTGCCGTTGAAAATGAGATGGATGAAGAGAGTG
rJMFF008M23+ CCAAGAATGCTCACCCCCCTGCATCTGCTGCCGTTGAAAATGAGATGGATGAAGAGAGTG
rJMFF011H02+ CCAAGAATGCTCACCCCCCTGCATCTGCTGCCGTTGAAAATGAGATGGATGAAGAGAGTG
rJMFF043A05+ CCAAGAATGCTCACCCCCCTGCATCTGCTGCCGTTGAAAATGAGATGGATGAAGAGAGTG
rJMFF043A01+ CCAAGAATGCTCACCCCCCTGCATCTGCTGCCGTTGAAAATGAGATGGATGAAGAGAGTG
                      ____________________________________________________________
consensus CCAAGAATGCTCACCCCCCTGCATCTGCTGCCGTTGAAAATGAGATGGATGAAGAGAGTG
 
. : . : . : . : . : . :
rJMSF007L18+ ATCAGGAAGCTTATGCTGGGAAACGTGGAAATGGGAAGGCTCAGAAACAAAGCAGCAGGC
rJMFF005P13+ ATCAGGAAGCTTATGCTGGGAAACGTGGAAATGGGAAGGCTCAGAAACAAAGCAGCAGGC
rJMFF008M23+ ATCAGGAAGCTTATGCTGGGAAACGTGGAAATGGGAAGGCTCAGAAACAAAGCAGCAGGC
rJMFF011H02+ ATCAGGAAGCTTATGCTGGGAAACGTGGAAATGGGAAGGCTCAGAAACAAAGCAGCAGGC
rJMFF043A05+ ATCAGGAAGCTTATGCTGGGAAACGTGGAAATGGGAAGGCTCAGAAACAAAGCAGCAGGC
rJMFF043A01+ ATCAGGAAGCTTATGCTGGGAAACGTGGAAATGGGAAGGCTCAGAAACAAAGCAGCAGGC
                      ____________________________________________________________
consensus ATCAGGAAGCTTATGCTGGGAAACGTGGAAATGGGAAGGCTCAGAAACAAAGCAGCAGGC
 
. : . : . : . : . : . :
rJMSF007L18+ CAAAGCCAAACTTGAAGTTGCCTCCTGCAAAAGTCACACAGCGTAAAGGTTCCAGTGCTT
rJMFF005P13+ CAAAGCCAAACTTGAAGTTGCCTCCTGCAAAAGTCACACAGCGTAAAGGTTCCAGTGCTT
rJMFF008M23+ CAAAGCCAAACTTGAAGTTGCCTCCTGCAAAAGTCACACAGCGTAAAGGTTCCAGTGCTT
rJMFF011H02+ CAAAGCCAAACTTGAAGTTGCCTCCTGCAAAAGTCACACAGCGTAAAGGTTCCAGTGCTT
rJMFF043A05+ CAAAGCCAAACTTGAAGTTGCCTCCTGCAAAAGTCACACAGCGTAAAGGTTCCAGTGCTT
rJMFF043A01+ CAAAGCCAAACTTGAAGTTGCCTCCTGCAAAAGTCACACAGCGTAAAGGTTCCAGTGCTT
                      ____________________________________________________________
consensus CAAAGCCAAACTTGAAGTTGCCTCCTGCAAAAGTCACACAGCGTAAAGGTTCCAGTGCTT
 
. : . : . : . : . : . :
rJMSF007L18+ CTCCCGCCAACCTGAATGTTGTTAAAAAACCCTGGCCCATTAAGGAAGATATTTACGAAG
rJMFF005P13+ CTCCCGCCAACCTGAATGTTGTTAAAAAACCCTGGCCCATTAAGGAAGATATTTACGAAG
rJMFF008M23+ CTCCCGCCAACCTGAATGTTGTTAAAAAACCCTGGCCCATTAAGGAAGATATTTACGAAG
rJMFF011H02+ CTCCCGCCAACCTGAATGTTGTTAAAAAACCCTGGCCCATTAAGGAAGATATTTACGAAG
rJMFF043A05+ CTCCCGCCAACCTGAATGTTGTTAAAAAACCCTGGCCCATTAAGGAAGATATTTACGAAG
rJMFF043A01+ TTCCCGCCAACCTGAATGTTGTTAAAAAACCCTGGCCCATTAAGGAAGATATTTTCGAAG
                      ____________________________________________________________
consensus CTCCCGCCAACCTGAATGTTGTTAAAAAACCCTGGCCCATTAAGGAAGATATTTACGAAG
 
. : . : . : . : . : . :
rJMSF007L18+ ACGAAGAAGATAGCGAAGAAACAGAAGAGGAGCGGGATGATGTCGGAGATGGATGGAGGT
rJMFF005P13+ ACGAAGAAGATAGCGAAGAAACAGAAGAGGAGCGGGATGATGTCGGAGATGGATGGAGGT
rJMFF008M23+ ACGAAGAAGATAGCGAAGAAACAGAAGAGGAGCGGGATGATGTCGGAGATGGATGGAGGT
rJMFF011H02+ ACGAAGAAGATAGCGAAGAAACAGAAGAGGAGCGGGATGATGTCGGAGATGGATGGAGGT
rJMFF043A05+ ACGAAGAAGATAGCGAAGAAACAGAAGAGGAGCGGGATGATGTCGGAGATGGATGGAGGT
rJMFF043A01+ ACGAAGAAGATAGCGAAGAACCAGAAGAGGAGCGGGATGATTTCGGAGATGGATGGAGGT
                      ____________________________________________________________
consensus ACGAAGAAGATAGCGAAGAAACAGAAGAGGAGCGGGATGATGTCGGAGATGGATGGAGGT
 
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rJMSF007L18+ ATGGGGGCAACAACGAAGATGATGATGAAGAGACAGAATATGAAGACTAGGGTTATGTTT
rJMFF005P13+ ATGGGGGCAACAACGAAGATGATGATGAAGAGACAGAATATGAAGACTAGGGTTATGTTT
rJMFF008M23+ ATGGGGGCAACAACGAAGATGATGATGAAGAGACAGAATATGAAGACTAGGGTTATGTTT
rJMFF011H02+ ATGGGGGCAACAACGAAGATGATGATGAAGAGACAGAATATGAAGACTAGGGTTATGTTT
rJMFF043A05+ ATGGGGGCAACAACGAAGATGATGATGAAGAGACAGAATATGAAGACTAGGGTTATGTTT
rJMFF043A01+ ATGGGGGCAACAACGAAGATGATGATGAAGAGACAGAATATGAAGACTAGGGTTATGTTT
                      ____________________________________________________________
consensus ATGGGGGCAACAACGAAGATGATGATGAAGAGACAGAATATGAAGACTAGGGTTATGTTT
 
. : . : . : . : . : . :
rJMSF007L18+ TGAAATTCTATTATAGCCATTCATGCCTGCTACTTGGATTTTCCCATGAACTTTGTTATT
rJMFF005P13+ TGAAATTCTATTATAGCCATTCATGCCTGCTACTTGGATTTTCCCATGAACTTTGTTATT
rJMFF008M23+ TGAAATTCTATTATAGCCATTCATGCCTGCTACTCGGATTTTCCCATGAACTTTGTTATT
rJMFF011H02+ TGAAATTCTATTATAGCCATTCATGCCTGCTACTTGGATTTTCCCATGAACTTTGTTATT
rJMFF043A05+ TGAAATTTTATTATAGCCATTCATGCCTGCTACTTGGATTTTCCCATGAACTTTGTTATT
rJMFF043A01+ TGAAATTTTATTATAGCCATTCATGCCTGCTACTTGGATTTTCCCATGAACTTTGTTATT
                      ____________________________________________________________
consensus TGAAATTCTATTATAGCCATTCATGCCTGCTACTTGGATTTTCCCATGAACTTTGTTATT
 
. : . : . : . : . : . :
rJMSF007L18+ GTAATCTAGGAATGTTAGGTTGGTGTTTTTTTGGTAATGAGTGTGGGAGTGATAGCCATT
rJMFF005P13+ GTAATCTAGGAATGTTAGGTTGGTGTTTTTTTGGTAATGAGTGTGGGAGTGATAGCCATT
rJMFF008M23+ GTAATCTAGGAATGTTAGGTTGGTGTTTTTTTGGTAATGAGTGTGGGAGTGATAGCCATT
rJMFF011H02+ GTAATCTAGGAATGTTAGGTTGGTGTTTTTTTGGTAATGAGTGTGGGAGTGATAGCCATT
rJMFF043A05+ GTAATCTAGGAATGTTAGGTTGGTGTTTTTTTGGTAATGAGTGTGGGAGTGATAGCCATT
rJMFF043A01+ GTAATCTAGGAATGTTAGGTTGGTGTTTTTTTGGTAATGAGTGTGGGAGTGATAGCCATT
                      ____________________________________________________________
consensus GTAATCTAGGAATGTTAGGTTGGTGTTTTTTTGGTAATGAGTGTGGGAGTGATAGCCATT
 
. : . : . : . : . : . :
rJMSF007L18+ TTGTACTTCTGATAATGT
rJMFF005P13+ TTGTACTTCTGATAATGTTGTTCCAAAGTATGAGAATGAATAAC
rJMFF008M23+ TTGTACTTCTGATAATGTTGTTCCAAAGTATGAGAA
rJMFF011H02+ TTGTACTTCTGATAATGTTGTTCCAAAGTATGAGAATGAATAAC
rJMFF043A05+ TTGTACTTCTGATAATGTTGTTCCAAAGTATGAGAATGAATAACATAGACTGTTTT
rJMFF043A01+ TTGTACTTCTGATAATGTTGTTCCAAAGTATGAGAATGAATAACATAGACTGTTTTTTTC
                      ____________________________________________________________
consensus TTGTACTTCTGATAATGTTGTTCCAAAGTATGAGAATGAATAACATAGACTGTTTTTTTC