| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005P13 | Sequence | 476 | 003087 (6) | ref|XP_009589888.1| | 3e-33 | PREDICTED: uncharacterized zinc finger protein At4g06634 [Nicotiana tomentosifo | 744 | 005502 (6) | gb|KJB16120.1| | 2e-53 | hypothetical protein B456_002G214700 [Gossypium raimondii] |
| JMFF008M23 | Sequence | 573 | 003087 (6) | gb|EYU26504.1| | 3e-63 | hypothetical protein MIMGU_mgv1a007778mg [Erythranthe guttata] | 735 | 005502 (6) | gb|KJB16120.1| | 1e-40 | hypothetical protein B456_002G214700 [Gossypium raimondii] |
| JMFF011H02 | Sequence | 476 | 003087 (6) | ref|XP_009589888.1| | 3e-33 | PREDICTED: uncharacterized zinc finger protein At4g06634 [Nicotiana tomentosifo | 746 | 005502 (6) | gb|KJB16119.1| | 7e-56 | hypothetical protein B456_002G214700 [Gossypium raimondii] |
| JMFF043A01 | Sequence | 639 | 003087 (6) | gb|EYU26504.1| | 2e-78 | hypothetical protein MIMGU_mgv1a007778mg [Erythranthe guttata] | 542 | 005502 (6) | ref|XP_006387776.1| | 3e-23 | hypothetical protein POPTR_0590s00200g [Populus trichocarpa] gb|ERP46690.1| hypo |
| JMFF043A05 | Sequence | 636 | 003087 (6) | gb|EYU26504.1| | 5e-75 | hypothetical protein MIMGU_mgv1a007778mg [Erythranthe guttata] | 541 | 005502 (6) | ref|XP_006387776.1| | 9e-24 | hypothetical protein POPTR_0590s00200g [Populus trichocarpa] gb|ERP46690.1| hypo |
| JMSF007L18 | Sequence | 378 | 003087 (6) | ref|XP_006350548.1| | 2e-25 | PREDICTED: uncharacterized zinc finger protein At4g06634-like [Solanum tuberosu | 776 | 005502 (6) | gb|KJB16120.1| | 1e-67 | hypothetical protein B456_002G214700 [Gossypium raimondii] |
This contig is upended
. : . : . : . : . : . :
rJMSF007L18+ CAGAATGTGGAAAGCGATATGCACACGAGTACNAGCT
____________________________________________________________
consensus CAGAATGTGGAAAGCGATATGCACACGAGTACNAGCT
. : . : . : . : . : . :
rJMSF007L18+ AAAAAATCACATTTCAACTACTCATCAGAAGAACGGCACACCAGAAGTGGCAAAGTATGT
rJMFF005P13+ TCATCAGAAGAACGGCACACCAGAAGTGGCAAAGTATGT
rJMFF008M23+ TCATCAGAAGAACGGCACACCAGAAGTGGCAAAGTATGT
rJMFF011H02+ TCATCAGAAGAACGGCACACCAGAAGTGGCAAAGTATGT
____________________________________________________________
consensus AAAAAATCACATTTCAACTACTCATCAGAAGAACGGCACACCAGAAGTGGCAAAGTATGT
. : . : . : . : . : . :
rJMSF007L18+ CCAGCATATAGAAAAGCCGACCAAAGCACCAAAATCTTCTGGAGGAGCATATGCCTCAGC
rJMFF005P13+ CCAGCATATAGAAAAGCCGACCAAAGCACCAAAATCTTNTGGAGGAGCATATGCCTCAGC
rJMFF008M23+ CCAGCATATAGAAAAGCCGACCAAAGCACCAAAATCTTCTGGAGGAGCGTATGCCTCAGC
rJMFF011H02+ CCAGCATATAGAAAAGCCGACCAAAGCACCAAAATCTTCTGGAGGAGCATATGCCTCAGC
____________________________________________________________
consensus CCAGCATATAGAAAAGCCGACCAAAGCACCAAAATCTTCTGGAGGAGCATATGCCTCAGC
. : . : . : . : . : . :
rJMSF007L18+ TTCATCCGACCGCCCTTACGTCTGTCCATATGAAGGGTGCGATAAAGCTTACATCCACGA
rJMFF005P13+ TTCATCCGACCGCCCTTACGTCTGTCCATATGAAGGGTGCGATAAAGCTTACATCCACGA
rJMFF008M23+ TTCATCCGACCGCCCTTACGTCTGTCCATATGAAGGGTGCGATAAAGCTTACATCCACGA
rJMFF011H02+ TTCATCCGACCGCCCTTACGTCTGTCCATATGAAGGGTGCGATAAAGCTTACATCCACGA
____________________________________________________________
consensus TTCATCCGACCGCCCTTACGTCTGTCCATATGAAGGGTGCGATAAAGCTTACATCCACGA
. : . : . : . : . : . :
rJMSF007L18+ ATACAAGCTCAATCTTCATTTGAGGAAAGAACATCCGGGT-CATTTCCCAGACGAGAATG
rJMFF005P13+ ATACAAGCTCAATCTTCATTTGAGGAAAGAACATCCGGGT-CATTTCCCAGACGAGAATG
rJMFF008M23+ ATACAAGCTCAATCTTCATTTGAGGAAAGAACATCCGGGTCCATTTCCCAGACGAGAATG
rJMFF011H02+ ATACAAGCTCAATCTTCATTTGAGGAAAGAACATCCGGGT-CATTTCCCAGACGAGAATG
rJMFF043A05+ GAATG
rJMFF043A01+ TG
____________________________________________________________
consensus ATACAAGCTCAATCTTCATTTGAGGAAAGAACATCCGGGT-CATTTCCCAGACGAGAATG
. : . : . : . : . : . :
rJMSF007L18+ CCAAGAATGCTCACCCCCCTGCATCTGCTGCCGTTGAAAATGAGATGGATGAAGAGAGTG
rJMFF005P13+ CCAAGAATGCTCACCCCCCTGCATCTGCTGCCGTTGAAAATGAGATGGATGAAGAGAGTG
rJMFF008M23+ CCAAGAATGCTCACCCCCCTGCATCTGCTGCCGTTGAAAATGAGATGGATGAAGAGAGTG
rJMFF011H02+ CCAAGAATGCTCACCCCCCTGCATCTGCTGCCGTTGAAAATGAGATGGATGAAGAGAGTG
rJMFF043A05+ CCAAGAATGCTCACCCCCCTGCATCTGCTGCCGTTGAAAATGAGATGGATGAAGAGAGTG
rJMFF043A01+ CCAAGAATGCTCACCCCCCTGCATCTGCTGCCGTTGAAAATGAGATGGATGAAGAGAGTG
____________________________________________________________
consensus CCAAGAATGCTCACCCCCCTGCATCTGCTGCCGTTGAAAATGAGATGGATGAAGAGAGTG
. : . : . : . : . : . :
rJMSF007L18+ ATCAGGAAGCTTATGCTGGGAAACGTGGAAATGGGAAGGCTCAGAAACAAAGCAGCAGGC
rJMFF005P13+ ATCAGGAAGCTTATGCTGGGAAACGTGGAAATGGGAAGGCTCAGAAACAAAGCAGCAGGC
rJMFF008M23+ ATCAGGAAGCTTATGCTGGGAAACGTGGAAATGGGAAGGCTCAGAAACAAAGCAGCAGGC
rJMFF011H02+ ATCAGGAAGCTTATGCTGGGAAACGTGGAAATGGGAAGGCTCAGAAACAAAGCAGCAGGC
rJMFF043A05+ ATCAGGAAGCTTATGCTGGGAAACGTGGAAATGGGAAGGCTCAGAAACAAAGCAGCAGGC
rJMFF043A01+ ATCAGGAAGCTTATGCTGGGAAACGTGGAAATGGGAAGGCTCAGAAACAAAGCAGCAGGC
____________________________________________________________
consensus ATCAGGAAGCTTATGCTGGGAAACGTGGAAATGGGAAGGCTCAGAAACAAAGCAGCAGGC
. : . : . : . : . : . :
rJMSF007L18+ CAAAGCCAAACTTGAAGTTGCCTCCTGCAAAAGTCACACAGCGTAAAGGTTCCAGTGCTT
rJMFF005P13+ CAAAGCCAAACTTGAAGTTGCCTCCTGCAAAAGTCACACAGCGTAAAGGTTCCAGTGCTT
rJMFF008M23+ CAAAGCCAAACTTGAAGTTGCCTCCTGCAAAAGTCACACAGCGTAAAGGTTCCAGTGCTT
rJMFF011H02+ CAAAGCCAAACTTGAAGTTGCCTCCTGCAAAAGTCACACAGCGTAAAGGTTCCAGTGCTT
rJMFF043A05+ CAAAGCCAAACTTGAAGTTGCCTCCTGCAAAAGTCACACAGCGTAAAGGTTCCAGTGCTT
rJMFF043A01+ CAAAGCCAAACTTGAAGTTGCCTCCTGCAAAAGTCACACAGCGTAAAGGTTCCAGTGCTT
____________________________________________________________
consensus CAAAGCCAAACTTGAAGTTGCCTCCTGCAAAAGTCACACAGCGTAAAGGTTCCAGTGCTT
. : . : . : . : . : . :
rJMSF007L18+ CTCCCGCCAACCTGAATGTTGTTAAAAAACCCTGGCCCATTAAGGAAGATATTTACGAAG
rJMFF005P13+ CTCCCGCCAACCTGAATGTTGTTAAAAAACCCTGGCCCATTAAGGAAGATATTTACGAAG
rJMFF008M23+ CTCCCGCCAACCTGAATGTTGTTAAAAAACCCTGGCCCATTAAGGAAGATATTTACGAAG
rJMFF011H02+ CTCCCGCCAACCTGAATGTTGTTAAAAAACCCTGGCCCATTAAGGAAGATATTTACGAAG
rJMFF043A05+ CTCCCGCCAACCTGAATGTTGTTAAAAAACCCTGGCCCATTAAGGAAGATATTTACGAAG
rJMFF043A01+ TTCCCGCCAACCTGAATGTTGTTAAAAAACCCTGGCCCATTAAGGAAGATATTTTCGAAG
____________________________________________________________
consensus CTCCCGCCAACCTGAATGTTGTTAAAAAACCCTGGCCCATTAAGGAAGATATTTACGAAG
. : . : . : . : . : . :
rJMSF007L18+ ACGAAGAAGATAGCGAAGAAACAGAAGAGGAGCGGGATGATGTCGGAGATGGATGGAGGT
rJMFF005P13+ ACGAAGAAGATAGCGAAGAAACAGAAGAGGAGCGGGATGATGTCGGAGATGGATGGAGGT
rJMFF008M23+ ACGAAGAAGATAGCGAAGAAACAGAAGAGGAGCGGGATGATGTCGGAGATGGATGGAGGT
rJMFF011H02+ ACGAAGAAGATAGCGAAGAAACAGAAGAGGAGCGGGATGATGTCGGAGATGGATGGAGGT
rJMFF043A05+ ACGAAGAAGATAGCGAAGAAACAGAAGAGGAGCGGGATGATGTCGGAGATGGATGGAGGT
rJMFF043A01+ ACGAAGAAGATAGCGAAGAACCAGAAGAGGAGCGGGATGATTTCGGAGATGGATGGAGGT
____________________________________________________________
consensus ACGAAGAAGATAGCGAAGAAACAGAAGAGGAGCGGGATGATGTCGGAGATGGATGGAGGT
. : . : . : . : . : . :
rJMSF007L18+ ATGGGGGCAACAACGAAGATGATGATGAAGAGACAGAATATGAAGACTAGGGTTATGTTT
rJMFF005P13+ ATGGGGGCAACAACGAAGATGATGATGAAGAGACAGAATATGAAGACTAGGGTTATGTTT
rJMFF008M23+ ATGGGGGCAACAACGAAGATGATGATGAAGAGACAGAATATGAAGACTAGGGTTATGTTT
rJMFF011H02+ ATGGGGGCAACAACGAAGATGATGATGAAGAGACAGAATATGAAGACTAGGGTTATGTTT
rJMFF043A05+ ATGGGGGCAACAACGAAGATGATGATGAAGAGACAGAATATGAAGACTAGGGTTATGTTT
rJMFF043A01+ ATGGGGGCAACAACGAAGATGATGATGAAGAGACAGAATATGAAGACTAGGGTTATGTTT
____________________________________________________________
consensus ATGGGGGCAACAACGAAGATGATGATGAAGAGACAGAATATGAAGACTAGGGTTATGTTT
. : . : . : . : . : . :
rJMSF007L18+ TGAAATTCTATTATAGCCATTCATGCCTGCTACTTGGATTTTCCCATGAACTTTGTTATT
rJMFF005P13+ TGAAATTCTATTATAGCCATTCATGCCTGCTACTTGGATTTTCCCATGAACTTTGTTATT
rJMFF008M23+ TGAAATTCTATTATAGCCATTCATGCCTGCTACTCGGATTTTCCCATGAACTTTGTTATT
rJMFF011H02+ TGAAATTCTATTATAGCCATTCATGCCTGCTACTTGGATTTTCCCATGAACTTTGTTATT
rJMFF043A05+ TGAAATTTTATTATAGCCATTCATGCCTGCTACTTGGATTTTCCCATGAACTTTGTTATT
rJMFF043A01+ TGAAATTTTATTATAGCCATTCATGCCTGCTACTTGGATTTTCCCATGAACTTTGTTATT
____________________________________________________________
consensus TGAAATTCTATTATAGCCATTCATGCCTGCTACTTGGATTTTCCCATGAACTTTGTTATT
. : . : . : . : . : . :
rJMSF007L18+ GTAATCTAGGAATGTTAGGTTGGTGTTTTTTTGGTAATGAGTGTGGGAGTGATAGCCATT
rJMFF005P13+ GTAATCTAGGAATGTTAGGTTGGTGTTTTTTTGGTAATGAGTGTGGGAGTGATAGCCATT
rJMFF008M23+ GTAATCTAGGAATGTTAGGTTGGTGTTTTTTTGGTAATGAGTGTGGGAGTGATAGCCATT
rJMFF011H02+ GTAATCTAGGAATGTTAGGTTGGTGTTTTTTTGGTAATGAGTGTGGGAGTGATAGCCATT
rJMFF043A05+ GTAATCTAGGAATGTTAGGTTGGTGTTTTTTTGGTAATGAGTGTGGGAGTGATAGCCATT
rJMFF043A01+ GTAATCTAGGAATGTTAGGTTGGTGTTTTTTTGGTAATGAGTGTGGGAGTGATAGCCATT
____________________________________________________________
consensus GTAATCTAGGAATGTTAGGTTGGTGTTTTTTTGGTAATGAGTGTGGGAGTGATAGCCATT
. : . : . : . : . : . :
rJMSF007L18+ TTGTACTTCTGATAATGT
rJMFF005P13+ TTGTACTTCTGATAATGTTGTTCCAAAGTATGAGAATGAATAAC
rJMFF008M23+ TTGTACTTCTGATAATGTTGTTCCAAAGTATGAGAA
rJMFF011H02+ TTGTACTTCTGATAATGTTGTTCCAAAGTATGAGAATGAATAAC
rJMFF043A05+ TTGTACTTCTGATAATGTTGTTCCAAAGTATGAGAATGAATAACATAGACTGTTTT
rJMFF043A01+ TTGTACTTCTGATAATGTTGTTCCAAAGTATGAGAATGAATAACATAGACTGTTTTTTTC
____________________________________________________________
consensus TTGTACTTCTGATAATGTTGTTCCAAAGTATGAGAATGAATAACATAGACTGTTTTTTTC