Contig 005498:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022G12Sequence463005498 (4)ref|XP_009758557.1|8e-63PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform 747005498 (4)ref|XP_009758557.1|2e-99PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform
JMFF042H11Sequence642005498 (4)ref|XP_009758557.1|1e-100PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform 616005498 (4)ref|XP_006352547.1|1e-86PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic-like iso

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF022G12- GTCCCAATTCGGAGTG
JMFF042H11- GTCCCAATTCGGAGTG
                      ____________________________________________________________
consensus GTCCCAATTCGGAGTG
 
. : . : . : . : . : . :
JMFF022G12- TCTCCTCAACTAATGGAAGTTCCGGCACTACAAGCCAGATTCCGTTTCCCTCGAGCTTCC
JMFF042H11- TCTCCTCAACTAATGGAAGTTCCGGCACTACAAGCCAGATTCCGTTTCCCTCGAGCTTCC
rJMFF022G12+ AGTTCCGGCACTACAAGCCAGATTCCGTTTCCCTCGAGCTTCC
                      ____________________________________________________________
consensus TCTCCTCAACTAATGGAAGTTCCGGCACTACAAGCCAGATTCCGTTTCCCTCGAGCTTCC
 
. : . : . : . : . : . :
JMFF022G12- ATATCCACATGTTTAAGTTATCAACACAAGCTCGCTGCACATGAGAACTCGCCTGAAAGA
JMFF042H11- ATATCCACATGTTTAAGTTATCAACACAAGCTCGCTGCACATGAGAACTCGCCTGAAAGA
rJMFF022G12+ ATATCCACATGTTTAAGTTATCAACACAAGCTCGCTGCACATGAGAACTCGCCTGAAAGA
                      ____________________________________________________________
consensus ATATCCACATGTTTAAGTTATCAACACAAGCTCGCTGCACATGAGAACTCGCCTGAAAGA
 
. : . : . : . : . : . :
JMFF022G12- CTGCACTCTTTAACTCTCAAGAAGGTTCTGAGAAGATCTGTTCTGCAGTTCCTTGGATTG
JMFF042H11- CTGCACTCTTTAACTCTCAAGAAGGTTCTGAGAAGATCTGTTCTGCAGTTCCTTGGATTG
rJMFF022G12+ CTGCACTCTTTAACTCTCAAGAAGGTTCTGAGAAGATCTGTTCTGCAGTTCCTTGGATTG
                      ____________________________________________________________
consensus CTGCACTCTTTAACTCTCAAGAAGGTTCTGAGAAGATCTGTTCTGCAGTTCCTTGGATTG
 
. : . : . : . : . : . :
JMFF022G12- AGCCCTATTCTTCTAAATGTATGCACTGTCACGGCTGCACCAATGCAGGAGATGAAAGAG
JMFF042H11- AGCCCTATTCTTCTAAATGTATGCACTGTCACGGCTGCACCAATGCAGGAGATGAAAGAG
rJMFF022G12+ AGCCCTATTCTTCTAAATGTATGCACTGTCACGGCTGCACCAATGCAGGAGATGAAAGAG
rJMFF042H11+ AGCCCTATTCTTCTAAATGTATGCACTGTCACGGCTGCACCAATGCAGGAGATGAAAGAG
                      ____________________________________________________________
consensus AGCCCTATTCTTCTAAATGTATGCACTGTCACGGCTGCACCAATGCAGGAGATGAAAGAG
 
. : . : . : . : . : . :
JMFF022G12- CCTGATGTTATACGGACCCTAAAGCTTGCTAGTGGAGTGAGGATACAAGATATTGTTGAA
JMFF042H11- CCTGATGTTATACGGACCCTAAAGCTTGCTAGTGGAGTGAGGATACAAGATATTGTTGAA
rJMFF022G12+ CCTGATGTTATACGGACCCTAAAGCTTGCTAGTGGAGTGAGGATACAAGATATTGTTGAA
rJMFF042H11+ CCTGATGTTATACGGACCCTAAAGCTTGCTAGTGGAGTGAGGATACAAGATATTGTTGAA
                      ____________________________________________________________
consensus CCTGATGTTATACGGACCCTAAAGCTTGCTAGTGGAGTGAGGATACAAGATATTGTTGAA
 
. : . : . : . : . : . :
JMFF022G12- GGGGAAGGACCAGAGGCTCGCGAGGGAGATATTGTGGAGATTAATTATGTCTGTCGAAGG
JMFF042H11- GGGGAAGGACCAGAGGCTCGCGAGGGAGATATTGTGGAGATTAATTATGTCTGTCGAAGG
rJMFF022G12+ GGGGAAGGACCAGAGGCTCGCGAGGGAGATATTGTGGAGATTAATTATGTCTGTCGAAGG
rJMFF042H11+ GGGGAAGGACCAGAGGCTCGCGAGGGAGATATTGTGGAGATTAATTATGTCTGTCGAAGG
                      ____________________________________________________________
consensus GGGGAAGGACCAGAGGCTCGCGAGGGAGATATTGTGGAGATTAATTATGTCTGTCGAAGG
 
. : . : . : . : . : . :
JMFF022G12- TCAAATGGATATTTTGTCCATAGTACCGTGGATCAGTTTAATGGAGAAAGTGCCCCTGTT
JMFF042H11- TCAAATGGATATTTTGTCCATAGTACCGTGGATCAGTTTAATGGAGAAAGTGCCCCTGTT
rJMFF022G12+ TCAAATGGATATTTTGTCCATAGTACCGTGGATCAGTTTAATGGAGAAAGTGCCCCTGTT
rJMFF042H11+ TCAAATGGATATTTTGTCCATAGTACCGTGGATCAGTTTAATGGAGAAAGTGCCCCTGTT
                      ____________________________________________________________
consensus TCAAATGGATATTTTGTCCATAGTACCGTGGATCAGTTTAATGGAGAAAGTGCCCCTGTT
 
. : . : . : . : . : . :
JMFF022G12- GTGCTTCCTTTGGATGATAAGCAGATA
JMFF042H11- GTGCTTCCTTTGGATGATAAGCAGATAATACAAGGTCTGAAGGAAGTATTAACTGGAATG
rJMFF022G12+ GTGCTTCCTTTGGATGATAAGCAGATAATACAAGGTCTGAAGGAAGTATTAACTGGAATG
rJMFF042H11+ GTGCTTCCTTTGGATGATAAGCAGATAATACAAGGTCTGAAGGAAGTATTAACTGGAATG
                      ____________________________________________________________
consensus GTGCTTCCTTTGGATGATAAGCAGATAATACAAGGTCTGAAGGAAGTATTAACTGGAATG
 
. : . : . : . : . : . :
JMFF042H11- AAGGCAGGAGGAAAAAGAAGAGCACTCATACCACCTTCAGTTGGTTACATCAGTGAAAAC
rJMFF022G12+ AAGGCAGGAGGAAAAAGAAGAGCACTCATACCACCTTCAGTTGGTTACATCAGTGAAAAC
rJMFF042H11+ AAGGCAGGAGGAAAAAGAAGAGCACTCATACCACCTTCAGTTGGTTACATCAGTGAAAAC
                      ____________________________________________________________
consensus AAGGCAGGAGGAAAAAGAAGAGCACTCATACCACCTTCAGTTGGTTACATCAGTGAAAAC
 
. : . : . : . : . : . :
JMFF042H11- TTAAAGCCGGTTCCAAATGAGTTTGGCCCTCGCCGCAGCCTGTTGTCCCANTGCAATGAG
rJMFF022G12+ TTAAAGCCGGTTCCAAATGAGTTTGGCCCTCGCCGCAGCCTGTTGTCCCATGCAAATGAG
rJMFF042H11+ TTAAAGCCGGTTCCAAATGAGTTTGGCCCTCGCCGCAGCCTGTTGTCCCATGCAAATGAG
                      ____________________________________________________________
consensus TTAAAGCCGGTTCCAAATGAGTTTGGCCCTCGCCGCAGCCTGTTGTCCCATGCAAATGAG
 
. : . : . : . : . : . :
JMFF042H11- CCTTTAATATTTGAAGTTCAGCTGCT
rJMFF022G12+ CCTTTAATATTTGAAGTTCAGCTGCTAAAAGTGTTATGAGTTCTGTAAATTATTTATGTT
rJMFF042H11+ CCTTTAATATTTGAAGTTCAGCTGCTAAAAGTGTTATGAGTTCTGTAAATTATTTATGTT
                      ____________________________________________________________
consensus CCTTTAATATTTGAAGTTCAGCTGCTAAAAGTGTTATGAGTTCTGTAAATTATTTATGTT
 
. : . : . : . : . : . :
rJMFF022G12+ GTCTGTGATTCACTTGATTCTGTAGCATTAACTTCAAATGATGTTGGCATTGTGATCTGG
rJMFF042H11+ GTCTGTGATTCACTTGATTCTGTAGCATTAACTTCAAATGATGTTGGCATTGTGATCTGG
                      ____________________________________________________________
consensus GTCTGTGATTCACTTGATTCTGTAGCATTAACTTCAAATGATGTTGGCATTGTGATCTGG
 
. : . : . : . : . : . :
rJMFF022G12+ TTGATCACTCTATAATGTATCTTACTTGAATGATCCA
rJMFF042H11+ TTGATCACTCTATAATGTATCTTACTTGAATGATCCATAATCCAAGATTTGAAGGTAACT
                      ____________________________________________________________
consensus TTGATCACTCTATAATGTATCTTACTTGAATGATCCATAATCCAAGATTTGAAGGTAACT