| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF022G12 | Sequence | 463 | 005498 (4) | ref|XP_009758557.1| | 8e-63 | PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform | 747 | 005498 (4) | ref|XP_009758557.1| | 2e-99 | PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform |
| JMFF042H11 | Sequence | 642 | 005498 (4) | ref|XP_009758557.1| | 1e-100 | PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic isoform | 616 | 005498 (4) | ref|XP_006352547.1| | 1e-86 | PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic-like iso |
This contig is upended
. : . : . : . : . : . :
JMFF022G12- GTCCCAATTCGGAGTG
JMFF042H11- GTCCCAATTCGGAGTG
____________________________________________________________
consensus GTCCCAATTCGGAGTG
. : . : . : . : . : . :
JMFF022G12- TCTCCTCAACTAATGGAAGTTCCGGCACTACAAGCCAGATTCCGTTTCCCTCGAGCTTCC
JMFF042H11- TCTCCTCAACTAATGGAAGTTCCGGCACTACAAGCCAGATTCCGTTTCCCTCGAGCTTCC
rJMFF022G12+ AGTTCCGGCACTACAAGCCAGATTCCGTTTCCCTCGAGCTTCC
____________________________________________________________
consensus TCTCCTCAACTAATGGAAGTTCCGGCACTACAAGCCAGATTCCGTTTCCCTCGAGCTTCC
. : . : . : . : . : . :
JMFF022G12- ATATCCACATGTTTAAGTTATCAACACAAGCTCGCTGCACATGAGAACTCGCCTGAAAGA
JMFF042H11- ATATCCACATGTTTAAGTTATCAACACAAGCTCGCTGCACATGAGAACTCGCCTGAAAGA
rJMFF022G12+ ATATCCACATGTTTAAGTTATCAACACAAGCTCGCTGCACATGAGAACTCGCCTGAAAGA
____________________________________________________________
consensus ATATCCACATGTTTAAGTTATCAACACAAGCTCGCTGCACATGAGAACTCGCCTGAAAGA
. : . : . : . : . : . :
JMFF022G12- CTGCACTCTTTAACTCTCAAGAAGGTTCTGAGAAGATCTGTTCTGCAGTTCCTTGGATTG
JMFF042H11- CTGCACTCTTTAACTCTCAAGAAGGTTCTGAGAAGATCTGTTCTGCAGTTCCTTGGATTG
rJMFF022G12+ CTGCACTCTTTAACTCTCAAGAAGGTTCTGAGAAGATCTGTTCTGCAGTTCCTTGGATTG
____________________________________________________________
consensus CTGCACTCTTTAACTCTCAAGAAGGTTCTGAGAAGATCTGTTCTGCAGTTCCTTGGATTG
. : . : . : . : . : . :
JMFF022G12- AGCCCTATTCTTCTAAATGTATGCACTGTCACGGCTGCACCAATGCAGGAGATGAAAGAG
JMFF042H11- AGCCCTATTCTTCTAAATGTATGCACTGTCACGGCTGCACCAATGCAGGAGATGAAAGAG
rJMFF022G12+ AGCCCTATTCTTCTAAATGTATGCACTGTCACGGCTGCACCAATGCAGGAGATGAAAGAG
rJMFF042H11+ AGCCCTATTCTTCTAAATGTATGCACTGTCACGGCTGCACCAATGCAGGAGATGAAAGAG
____________________________________________________________
consensus AGCCCTATTCTTCTAAATGTATGCACTGTCACGGCTGCACCAATGCAGGAGATGAAAGAG
. : . : . : . : . : . :
JMFF022G12- CCTGATGTTATACGGACCCTAAAGCTTGCTAGTGGAGTGAGGATACAAGATATTGTTGAA
JMFF042H11- CCTGATGTTATACGGACCCTAAAGCTTGCTAGTGGAGTGAGGATACAAGATATTGTTGAA
rJMFF022G12+ CCTGATGTTATACGGACCCTAAAGCTTGCTAGTGGAGTGAGGATACAAGATATTGTTGAA
rJMFF042H11+ CCTGATGTTATACGGACCCTAAAGCTTGCTAGTGGAGTGAGGATACAAGATATTGTTGAA
____________________________________________________________
consensus CCTGATGTTATACGGACCCTAAAGCTTGCTAGTGGAGTGAGGATACAAGATATTGTTGAA
. : . : . : . : . : . :
JMFF022G12- GGGGAAGGACCAGAGGCTCGCGAGGGAGATATTGTGGAGATTAATTATGTCTGTCGAAGG
JMFF042H11- GGGGAAGGACCAGAGGCTCGCGAGGGAGATATTGTGGAGATTAATTATGTCTGTCGAAGG
rJMFF022G12+ GGGGAAGGACCAGAGGCTCGCGAGGGAGATATTGTGGAGATTAATTATGTCTGTCGAAGG
rJMFF042H11+ GGGGAAGGACCAGAGGCTCGCGAGGGAGATATTGTGGAGATTAATTATGTCTGTCGAAGG
____________________________________________________________
consensus GGGGAAGGACCAGAGGCTCGCGAGGGAGATATTGTGGAGATTAATTATGTCTGTCGAAGG
. : . : . : . : . : . :
JMFF022G12- TCAAATGGATATTTTGTCCATAGTACCGTGGATCAGTTTAATGGAGAAAGTGCCCCTGTT
JMFF042H11- TCAAATGGATATTTTGTCCATAGTACCGTGGATCAGTTTAATGGAGAAAGTGCCCCTGTT
rJMFF022G12+ TCAAATGGATATTTTGTCCATAGTACCGTGGATCAGTTTAATGGAGAAAGTGCCCCTGTT
rJMFF042H11+ TCAAATGGATATTTTGTCCATAGTACCGTGGATCAGTTTAATGGAGAAAGTGCCCCTGTT
____________________________________________________________
consensus TCAAATGGATATTTTGTCCATAGTACCGTGGATCAGTTTAATGGAGAAAGTGCCCCTGTT
. : . : . : . : . : . :
JMFF022G12- GTGCTTCCTTTGGATGATAAGCAGATA
JMFF042H11- GTGCTTCCTTTGGATGATAAGCAGATAATACAAGGTCTGAAGGAAGTATTAACTGGAATG
rJMFF022G12+ GTGCTTCCTTTGGATGATAAGCAGATAATACAAGGTCTGAAGGAAGTATTAACTGGAATG
rJMFF042H11+ GTGCTTCCTTTGGATGATAAGCAGATAATACAAGGTCTGAAGGAAGTATTAACTGGAATG
____________________________________________________________
consensus GTGCTTCCTTTGGATGATAAGCAGATAATACAAGGTCTGAAGGAAGTATTAACTGGAATG
. : . : . : . : . : . :
JMFF042H11- AAGGCAGGAGGAAAAAGAAGAGCACTCATACCACCTTCAGTTGGTTACATCAGTGAAAAC
rJMFF022G12+ AAGGCAGGAGGAAAAAGAAGAGCACTCATACCACCTTCAGTTGGTTACATCAGTGAAAAC
rJMFF042H11+ AAGGCAGGAGGAAAAAGAAGAGCACTCATACCACCTTCAGTTGGTTACATCAGTGAAAAC
____________________________________________________________
consensus AAGGCAGGAGGAAAAAGAAGAGCACTCATACCACCTTCAGTTGGTTACATCAGTGAAAAC
. : . : . : . : . : . :
JMFF042H11- TTAAAGCCGGTTCCAAATGAGTTTGGCCCTCGCCGCAGCCTGTTGTCCCANTGCAATGAG
rJMFF022G12+ TTAAAGCCGGTTCCAAATGAGTTTGGCCCTCGCCGCAGCCTGTTGTCCCATGCAAATGAG
rJMFF042H11+ TTAAAGCCGGTTCCAAATGAGTTTGGCCCTCGCCGCAGCCTGTTGTCCCATGCAAATGAG
____________________________________________________________
consensus TTAAAGCCGGTTCCAAATGAGTTTGGCCCTCGCCGCAGCCTGTTGTCCCATGCAAATGAG
. : . : . : . : . : . :
JMFF042H11- CCTTTAATATTTGAAGTTCAGCTGCT
rJMFF022G12+ CCTTTAATATTTGAAGTTCAGCTGCTAAAAGTGTTATGAGTTCTGTAAATTATTTATGTT
rJMFF042H11+ CCTTTAATATTTGAAGTTCAGCTGCTAAAAGTGTTATGAGTTCTGTAAATTATTTATGTT
____________________________________________________________
consensus CCTTTAATATTTGAAGTTCAGCTGCTAAAAGTGTTATGAGTTCTGTAAATTATTTATGTT
. : . : . : . : . : . :
rJMFF022G12+ GTCTGTGATTCACTTGATTCTGTAGCATTAACTTCAAATGATGTTGGCATTGTGATCTGG
rJMFF042H11+ GTCTGTGATTCACTTGATTCTGTAGCATTAACTTCAAATGATGTTGGCATTGTGATCTGG
____________________________________________________________
consensus GTCTGTGATTCACTTGATTCTGTAGCATTAACTTCAAATGATGTTGGCATTGTGATCTGG
. : . : . : . : . : . :
rJMFF022G12+ TTGATCACTCTATAATGTATCTTACTTGAATGATCCA
rJMFF042H11+ TTGATCACTCTATAATGTATCTTACTTGAATGATCCATAATCCAAGATTTGAAGGTAACT
____________________________________________________________
consensus TTGATCACTCTATAATGTATCTTACTTGAATGATCCATAATCCAAGATTTGAAGGTAACT