| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF041P02 | Sequence | 640 | 002309 (5) | ref|XP_009796803.1| | 7e-105 | PREDICTED: elongator complex protein 2 [Nicotiana sylvestris] | 616 | 005493 (3) | ref|XP_002526286.1| | 1e-71 | nucleotide binding protein, putative [Ricinus communis] gb|EEF36075.1| nucleotid |
| JMSF030H18 | Sequence | 668 | 002309 (5) | ref|XP_009796803.1| | 5e-103 | PREDICTED: elongator complex protein 2 [Nicotiana sylvestris] | 770 | 005493 (3) | ref|XP_002526286.1| | 1e-96 | nucleotide binding protein, putative [Ricinus communis] gb|EEF36075.1| nucleotid |
| JMSF031H14 | Sequence | 654 | 002309 (5) | ref|XP_009796803.1| | 2e-93 | PREDICTED: elongator complex protein 2 [Nicotiana sylvestris] | 747 | 005493 (3) | ref|XP_002526286.1| | 7e-98 | nucleotide binding protein, putative [Ricinus communis] gb|EEF36075.1| nucleotid |
This contig is upended
. : . : . : . : . : . :
rJMSF030H18+ CATGCAAGGCTCAATCAGCATCAGTTGCAGA
____________________________________________________________
consensus CATGCAAGGCTCAATCAGCATCAGTTGCAGA
. : . : . : . : . : . :
rJMSF030H18+ AGTATGGCTTGGCAAGTGGGTTCTNGAAGTCAGTCGGCCGCCTCCATTCACACAGCTTGA
rJMSF031H14+ TTGGCAAGTGGGTTCTGGAAGTCAGTCGGCCGCCTCCATTCACACAGCTTGA
____________________________________________________________
consensus AGTATGGCTTGGCAAGTGGGTTCTGGAAGTCAGTCGGCCGCCTCCATTCACACAGCTTGA
. : . : . : . : . : . :
rJMSF030H18+ CAGTGACTCAGATGGAGTTTTCTCACGATGACAACTACCTTCTCACTGTTTCAAGGGATC
rJMSF031H14+ CAGTGACTCAGATGGAGTTTTCTCACGATGACAACTACCTTCTCACTGTTTCAAGGGATC
____________________________________________________________
consensus CAGTGACTCAGATGGAGTTTTCTCACGATGACAACTACCTTCTCACTGTTTCAAGGGATC
. : . : . : . : . : . :
rJMSF030H18+ GCCACTTTTCTGTTTTCTCAATTAATCATACAGGTAATGACACGAGTTACCAGCTTGTAT
rJMSF031H14+ GCCACTTTTCTGTTTTCTCAATTAATCATACAGGTAATGACACGAGTTACCAGCTTGTAT
rJMFF041P02+ GAGTTACCAGCTGGTAT
____________________________________________________________
consensus GCCACTTTTCTGTTTTCTCAATTAATCATACAGGTAATGACACGAGTTACCAGCTTGTAT
. : . : . : . : . : . :
rJMSF030H18+ CTAAGCAGGAGGCACATAAAAGAATAATATGGGCATGTTCTTGGAACCCATACGGTAATG
rJMSF031H14+ CTAAGCAGGAGGCACATAAAAGAATAATATGGGCATGTTCTTGGAACCCATACGGTAATG
rJMFF041P02+ CTAAGCAGGAGGCACATAAAAGAATAATATGGGCATGTTCTTGGAACCCATACGGTAATG
____________________________________________________________
consensus CTAAGCAGGAGGCACATAAAAGAATAATATGGGCATGTTCTTGGAACCCATACGGTAATG
. : . : . : . : . : . :
rJMSF030H18+ AATTCGCCACTGGCTCAAGGGACAAGACCGTCAAAATCTGGGCGGTGGAAAATGAGGCCT
rJMSF031H14+ AATTCGCCACTGGCTCAAGGGACAAGACCGTCAAAATCTGGGCGGTGGAAAATGAGGCCT
rJMFF041P02+ AATTCGCCACTGGCTCAAGGGACAAGACCGTCAAAATCTGGGCGGTGGAAAATGAGGCCT
____________________________________________________________
consensus AATTCGCCACTGGCTCAAGGGACAAGACCGTCAAAATCTGGGCGGTGGAAAATGAGGCCT
. : . : . : . : . : . :
rJMSF030H18+ CGGTGAAACAACTCCTGACTCTGCCGATATTCAACGCTAGTGTGACATCCCTATCTTGGG
rJMSF031H14+ CGGTGAAACAACTCCTGACTCTGCCGATATTCAACGCTAGTGTGACATCCCTATCTTGGG
rJMFF041P02+ CGGTGAAACAACTCCTGACTCTGCCGATATTCAACGCTAGTGTGACATCCCTATCTTGGG
____________________________________________________________
consensus CGGTGAAACAACTCCTGACTCTGCCGATATTCAACGCTAGTGTGACATCCCTATCTTGGG
. : . : . : . : . : . :
rJMSF030H18+ TTGGCCTTAGTCGCCCCAACAACCATGGCCTTCTTGCAGTGGGGATGGAAAACGGTTTGA
rJMSF031H14+ TTGGCCTTAGTCGCCCCAACAACCATGGCCTTCTTGCAGTGGGGATGGAAAACGGTTTGA
rJMFF041P02+ TTGGCCTTAGTCGCCCCAACAACCATGGCCTTCTTGCAGTGGGGATGGAAAACGGTTTGA
____________________________________________________________
consensus TTGGCCTTAGTCGCCCCAACAACCATGGCCTTCTTGCAGTGGGGATGGAAAACGGTTTGA
. : . : . : . : . : . :
rJMSF030H18+ TCGAGTTATGGAGCCTTCATAGCAGAAGAACCGAAGATGGTAGCCCATCATCAGTTCCAA
rJMSF031H14+ TCGAGTTATGGAGCCTTCATAGCAGAAGAACCGAAGATGGTAGCCCATCATCAGTTCCAA
rJMFF041P02+ TCGAGTTATGGAGCCTTCATAGCAGAAGAACCGAAGATGGTAGCCCATCATCAGTTCCAA
____________________________________________________________
consensus TCGAGTTATGGAGCCTTCATAGCAGAAGAACCGAAGATGGTAGCCCATCATCAGTTCCAA
. : . : . : . : . : . :
rJMSF030H18+ CCGCTAATCTTGCTGTTAAACTCGATCCTTTTATGTGCCACGTATCCACTGTCAACCGGT
rJMSF031H14+ CCGCTAATCTTGCTGTTAAACTCGATCCTTTTATGTGCCACGTATCCACTGTCAACCGGT
rJMFF041P02+ CCGCTAATCTTGCTGTTAAGCTCGATCCTTTTATGTGCCACGTATCCACTGTCAACCGGT
____________________________________________________________
consensus CCGCTAATCTTGCTGTTAAACTCGATCCTTTTATGTGCCACGTATCCACTGTCAACCGGT
. : . : . : . : . : . :
rJMSF030H18+ TATCATGGAGAAACTCGGAGAAAAGCGAAGAATCCAACGCCATGCAACTTGCGTCGTGTG
rJMSF031H14+ TATCATGGAGAAACTCGGAGAAAAGCGAAGAATCCAACGCCATGCAACTTGCGTCGTGTG
rJMFF041P02+ TATCATGGAGAAACTCGGAGAAAAGCGAAGAATCCAACGCCATGCAACTTGCGTCGTGTG
____________________________________________________________
consensus TATCATGGAGAAACTCGGAGAAAAGCGAAGAATCCAACGCCATGCAACTTGCGTCGTGTG
. : . : . : . : . : . :
rJMSF030H18+ GGGCTGATCAATGCGTGAGAATATTTAACGTATGTTTTGGTTGAGCCAGAAATGAAATTT
rJMSF031H14+ GGGCTGATCAATGCGTGAGAATATTTAACGTATGTTTTGGTTGAGCCAGAAATGAAATTT
rJMFF041P02+ GGGCTGATCAATGCGTGAGAATATTTAACGTATGTTTTGGTTGAGCCAGAAATGAAATTT
____________________________________________________________
consensus GGGCTGATCAATGCGTGAGAATATTTAACGTATGTTTTGGTTGAGCCAGAAATGAAATTT
. : . : . : . : . : . :
rJMSF030H18+ TGTAGATAGAACTTTGAAGCATGTTTGTATTTTAATCA-CCTGAAATATATAGAAATTGG
rJMSF031H14+ TGTAGATAGAACTTTGAAGCATGTTTGTATTTTAATCAGCCTGAAATATATAGAAATTGG
rJMFF041P02+ TGTAGATAGAACTTTGAAGCATGTTTGTATTTTAATCA-CCTGAAATATATAGAAATTGG
____________________________________________________________
consensus TGTAGATAGAACTTTGAAGCATGTTTGTATTTTAATCA-CCTGAAATATATAGAAATTGG
. : . : . : . : . : . :
rJMSF030H18+ GATGACTATAATGTTTGAAA
rJMSF031H14+ GATGACTATAATGTTTGAAA
rJMFF041P02+ GATGACTATAATGTTTGAAACATTAGTTGGTAGTTTATGCTATTTACTTCAACTTTTCCC
____________________________________________________________
consensus GATGACTATAATGTTTGAAACATTAGTTGGTAGTTTATGCTATTTACTTCAACTTTTCCC