Contig 005491:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003M01Sequence275007453 (4)ref|XP_006343987.1|5e-04PREDICTED: glutamate--cysteine ligase, chloroplastic-like [Solanum tuberosum]741005491 (5)emb|CDP09740.1|2e-81unnamed protein product [Coffea canephora]
JMFF004P16Sequence515007453 (4)ref|XP_006343987.1|1e-54PREDICTED: glutamate--cysteine ligase, chloroplastic-like [Solanum tuberosum]737005491 (5)emb|CDP09740.1|4e-87unnamed protein product [Coffea canephora]
JMFF021L17Sequence539007453 (4)ref|XP_006343987.1|3e-60PREDICTED: glutamate--cysteine ligase, chloroplastic-like [Solanum tuberosum]748005491 (5)emb|CDP09740.1|3e-82unnamed protein product [Coffea canephora]
JMFF041I07Sequence592007453 (4)ref|XP_006343987.1|8e-73PREDICTED: glutamate--cysteine ligase, chloroplastic-like [Solanum tuberosum]471005491 (5)gb|AFF18843.1|1e-25gamma-glutamylcysteine synthetase, partial [Dimocarpus longan]
JMSF034L03Sequence621018971ref|XP_006343987.1|3e-48PREDICTED: glutamate--cysteine ligase, chloroplastic-like [Solanum tuberosum]755005491 (5)dbj|BAP47506.1|5e-112gamma-glutamylcysteine synthetase [Gentiana triflora]

Alignment

This contig is upended


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rJMSF034L03+                                                                   AAG
                      ____________________________________________________________
consensus                                                                      AAG
 
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rJMSF034L03+          AAGTATATTGATTGTACTGGAATGTCCTTCAGGGATTTTATGGCGGGGAAACTGCCTCCT
                      ____________________________________________________________
consensus             AAGTATATTGATTGTACTGGAATGTCCTTCAGGGATTTTATGGCGGGGAAACTGCCTCCT
 
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rJMSF034L03+          ATTCCTGGAGAATATCCCACACTTAATGACTGGGAGAACCATTTGACAACAATATTT-CC
rJMFF003M01+               TGGAGAATATCCCACACTTAATGACTGGGAGAACCATTTGACAACAATATTTNCC
rJMFF021L17+                              ACTTAATGACTGGGAGAACCATTTGACAACAATATTTCCC
rJMFF004P16+                                          GGAGAACCATTTGACANCAATATTT-CC
                      ____________________________________________________________
consensus             ATTCCTGGAGAATATCCCACACTTAATGACTGGGAGAACCATTTGACAACAATATTTCCC
 
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rJMSF034L03+          CGAGGTGAGACTTAAAAGGTACCTGGAAATGCGAGGGGCCGATGGAGGACCTTGGCGGCG
rJMFF003M01+          CGAGGTGAGACTTAAAAGGTACCTGGAAATGCGAGGGGCCGATGGAGGACCTTGGCGGCG
rJMFF021L17+          CGAGGTGAGACTTAAAAGGTACCTGGAAATGCGAGGGGCCGATGGAGGACCTTGGCGGCG
rJMFF004P16+          CGAGGTGAGACTTAAAAGGTACCTGGAAATGCGAGGGGCCGATGGAGGACCTTGGCGGCG
                      ____________________________________________________________
consensus             CGAGGTGAGACTTAAAAGGTACCTGGAAATGCGAGGGGCCGATGGAGGACCTTGGCGGCG
 
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rJMSF034L03+          ATTATGTGCATTGCCTGCTTTCTGGGTTGGTTTATTGTATGATGATATATCTTTACAAAG
rJMFF003M01+          ATTATGTGCATTGCCTGCTTTCTGGGTTGGTTTATTGTATGATGATATATCTTTACAAAG
rJMFF021L17+          ATTATGTGCATTGCCTGCTTTCTGGGTTGGTTTATTGTATGATGATATATCTTTACAAAG
rJMFF004P16+          ATTATGTGCATTGCCTGCTTTCTGGGTTGGTTTATTGTATGATGATATATCTTTACAAAG
                      ____________________________________________________________
consensus             ATTATGTGCATTGCCTGCTTTCTGGGTTGGTTTATTGTATGATGATATATCTTTACAAAG
 
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rJMSF034L03+          TGTTCTGGACATGACAGCAGATTGGACTATGGGAGAACGAGAGATGTTAAGGAATAAGGT
rJMFF003M01+          TGTTCTGGACATGACAGCAGATTGGACTATGGGAGAACGAGAGATGTTAAGGAATAAGGT
rJMFF021L17+          TGTTCTGGACATGACAGCAGATTGGACTATGGGAGAACGAGAGATGTTAAGGAATAAGGT
rJMFF004P16+          TGTTCTGGACATGACAGCAGATTGGACTATGGGAGAACGAGAGATGTTAAGGAATAAGGT
                      ____________________________________________________________
consensus             TGTTCTGGACATGACAGCAGATTGGACTATGGGAGAACGAGAGATGTTAAGGAATAAGGT
 
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rJMSF034L03+          TCCTAAAAGTGGTTTGAATACACCATTTCGAGACGGTTTGCTCAAGCATGTTGCTCAAGA
rJMFF003M01+          TCCTAAAAGTGGTTTGAATACACCATTTCGAGACGGTTTGCTCAAGCATGTTGCTCAAGA
rJMFF021L17+          TCCTAAAAGTGGTTTGAATACACCATTTCGAGACGGTTTGCTCAAGCATGTTGCTCAAGA
rJMFF004P16+          TCCTAAAAGTGGTTTGAATACACCATTTCGAGACGGTTTGCTCAAGCATGTTGCTCAAGA
                      ____________________________________________________________
consensus             TCCTAAAAGTGGTTTGAATACACCATTTCGAGACGGTTTGCTCAAGCATGTTGCTCAAGA
 
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rJMSF034L03+          TGTTCTGCACTTGGCGAAAGGAGGTCTGGAAAGAAGAGGCTATAAGGAAACCGGGTTTCT
rJMFF003M01+          TGTTCTGCACTTGGCGAAAGGAGGTCTGGAAAGAAGAGGCTATAAGGAAACCGGGTTTCT
rJMFF021L17+          TGTTCTGCACTTGGCGAAAGGAGGTCTGGAAAGAAGAGGCTATAAGGAAACCGGGTTTCT
rJMFF004P16+          TGTTCTGCACTTGGCGAAAGGAGGTCTGGAAAGAAGAGGCTATAAGGAAACCGGGTTTCT
rJMFF041I07+                   CTTGGCGAAAGGAGGTCTGGAAAGAAGAGGCTATAAGGAAACCGGGTTTCT
                      ____________________________________________________________
consensus             TGTTCTGCACTTGGCGAAAGGAGGTCTGGAAAGAAGAGGCTATAAGGAAACCGGGTTTCT
 
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rJMSF034L03+          GAATGCAGTAGCTGAAGTCGTCAACACAGGCGTGACGCCAGCCGAGAAGCTCCTGGAATT
rJMFF003M01+          GAATGCAGTAGCTGAAGTCGTCAACACAGGCGTGACGCCAGCCGAGAAGCTCCTGGAATT
rJMFF021L17+          GAATGCAGTAGCTGAAGTCGTCAACACAGGCGTGACGCCAGCCGAGAAGCTCCTGGAATT
rJMFF004P16+          GAATGCAGTAGCTGAAGTCGTCAACACAGGCGTGACGCCAGCCGAGAAGCTCCTGGAATT
rJMFF041I07+          GAATGCAGTAGCTGAAGTCGTCAACACAGGCGTGACGCCAGCCGAGAAGCTCCTGGAATT
                      ____________________________________________________________
consensus             GAATGCAGTAGCTGAAGTCGTCAACACAGGCGTGACGCCAGCCGAGAAGCTCCTGGAATT
 
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rJMSF034L03+          GTACCATGGGAAATGGGGGCAAAATGTTGATCCTGTATTTGAGGAGCTGCTTTACTGAGG
rJMFF003M01+          GTACCATGGGAAATGGGGGCAAAATGTTGATCCTGTATTTGAGGAGCTGCTTTACTGAGG
rJMFF021L17+          GTACCATGGGAAATGGGGGCAAAATGTTGATCCTGTATTTGAGGAGCTGCTTTACTGAGG
rJMFF004P16+          GTACCATGGGAAATGGGGGCAAAATGTTGATCCTGTATTTGAGGAGCTGCTTTACTGAGG
rJMFF041I07+          GTACCATGGGAAATGGGGGCAAAATGTTGATCCTGTATTTGAGGAGCTGCTTTACTGAGG
                      ____________________________________________________________
consensus             GTACCATGGGAAATGGGGGCAAAATGTTGATCCTGTATTTGAGGAGCTGCTTTACTGAGG
 
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rJMSF034L03+          CTAAACAAGAAAGAAGCTGTGTTTTGGGGTTTTGTTTTTGTGGTGTAATCATTCTTCAAA
rJMFF003M01+          CTAAACAAGAAAGAAGCTGTGTTTTGGGGTTTTGTTTTTGTGGTGTAATCATTCTTCAAA
rJMFF021L17+          CTAAACAAGAAAGAAGCTGTGTTTTGGGGTTTTGTTTTTGTGGTGTAATCATTCTTCAAA
rJMFF004P16+          CTAAACAAGAAAGAAGCTGTGTTTTGGGGTTTTGTTTTTGTGGTGTAATCATTCTTCAAA
rJMFF041I07+          CTAAACAAGAAAGAAGCTGTGTTTTGGGGTTTTGTTTTTGTGGGGTAATCATTCTTCAAA
                      ____________________________________________________________
consensus             CTAAACAAGAAAGAAGCTGTGTTTTGGGGTTTTGTTTTTGTGGTGTAATCATTCTTCAAA
 
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rJMSF034L03+          ACACTTTAGGGCAACTTGTGTTTAGAATAAAGGTTTGCATACAGAGATGTATTTTGGTCC
rJMFF003M01+          ACACTTTAGGGCAACTTGTGTTTAGAATAAAGGTTTGCATACAGAGATGTATTTTGGTCC
rJMFF021L17+          ACACTTTAGGGCAACTTGTGTTTAGAATAAAGGTTTGCATACAGAGATGTATTTTGGTCC
rJMFF004P16+          ACACTTTAGGGCAACTTGTGTTTAGAATAAAGGTTTGCATACAGAGATGTATTTTGGTCC
rJMFF041I07+          ACACTTTAGGGCAACTTGTGTTTAGAATAAAGGTTTGCATACAGAGATGTATTTTGGTCC
                      ____________________________________________________________
consensus             ACACTTTAGGGCAACTTGTGTTTAGAATAAAGGTTTGCATACAGAGATGTATTTTGGTCC
 
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rJMSF034L03+          AATCTTTGTTGGATATTTATATAGTAGATGGGTGCTTCAGGTTTCAAGCATGCAACCCAA
rJMFF003M01+          AATCTTTGTTGGATATTTATATAGTAGATGGGTGCTTCAGGTTTCAAGCATGCAACCCAA
rJMFF021L17+          AATCTTTGTTGGATATTTATATAGTAGATGGGTGCTTCAGGTTTCAAGCATGCAACCCAA
rJMFF004P16+          AATCTTTGTTGGATATTTATATAGTAGATGGGTGCTTCAGGTTTCAAGCATGCAACCCAA
rJMFF041I07+          AATCTTTGTTGGATATTTATATAGTAGATGGGTGCTTCAGGTTTCAAGCATGCAACCCAA
                      ____________________________________________________________
consensus             AATCTTTGTTGGATATTTATATAGTAGATGGGTGCTTCAGGTTTCAAGCATGCAACCCAA
 
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rJMSF034L03+          AACTTTAATTCATAC                                             
rJMFF003M01+          AACTTTAATTCATACTTTGGGTGTTAAAATATCATTTTAAGTTTCGTAGGAATATATTAA
rJMFF021L17+          AACTTTAATTCATACTTTGGGTGTTAAAATATCATTTTAAGTTTCGTAGGAATATATTAA
rJMFF004P16+          AACTTTAATTCATACTTTGGGTGTTAAAATATCATTTTAAGTTTCGTAGGAATATATTAA
rJMFF041I07+          AACTTTAATTCATACTTTGGGTGTTAAAATATCATTTTAAGTTTCGTAGGAATATATTAA
                      ____________________________________________________________
consensus             AACTTTAATTCATACTTTGGGTGTTAAAATATCATTTTAAGTTTCGTAGGAATATATTAA
 
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rJMFF003M01+          AATTGTTGATCAGACGAGCATGGCGA                                  
rJMFF021L17+          AATTGTTGATCAGACGAGCATGGCGACGTCGTATTT                        
rJMFF004P16+          AATTGTTGATCAGACGAGCATGGCGACGTCGTATTT                        
rJMFF041I07+          AATTGTTGATCAGACGAGCATGGCGACGTCGTATTTTAGTACGAGAATCATATTCTATCT
                      ____________________________________________________________
consensus             AATTGTTGATCAGACGAGCATGGCGACGTCGTATTTTAGTACGAGAATCATATTCTATCT