Contig 005487:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001B08Sequence455005487 (10)ref|XP_009590601.1|3e-85PREDICTED: pollen-specific protein SF3-like [Nicotiana tomentosiformis]584001745 (12)ref|XP_011077317.1|1e-76PREDICTED: S-adenosylmethionine synthase 3 [Sesamum indicum]
JMFF020L20Sequence528005487 (10)ref|XP_009803543.1|1e-104PREDICTED: pollen-specific protein SF3-like [Nicotiana sylvestris]701005487 (10)ref|XP_009590601.1|9e-84PREDICTED: pollen-specific protein SF3-like [Nicotiana tomentosiformis]
JMFF022A19Sequence357005487 (10)ref|XP_009803543.1|2e-60PREDICTED: pollen-specific protein SF3-like [Nicotiana sylvestris]703005487 (10)ref|XP_009590601.1|7e-84PREDICTED: pollen-specific protein SF3-like [Nicotiana tomentosiformis]
JMFF040K05Sequence554005487 (10)ref|XP_009803543.1|3e-114PREDICTED: pollen-specific protein SF3-like [Nicotiana sylvestris]832005487 (10)ref|XP_009590601.1|3e-118PREDICTED: pollen-specific protein SF3-like [Nicotiana tomentosiformis]
JMFF044O20Sequence643005487 (10)ref|XP_009590601.1|5e-117PREDICTED: pollen-specific protein SF3-like [Nicotiana tomentosiformis]630009828 (23)ref|XP_004253517.1|4e-68PREDICTED: protein CER1-like 1, partial [Solanum lycopersicum]
JMFN006L04Sequence638005487 (10)ref|XP_009803543.1|6e-38PREDICTED: pollen-specific protein SF3-like [Nicotiana sylvestris]
JMFN009I23Sequence642005487 (10)ref|XP_009590601.1|8e-62PREDICTED: pollen-specific protein SF3-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFN006L04+                TTATAAAAATATCACATAAAAATTTTCTGGCACACATAAGGGCAAAAGCAGCAAT
rJMFF020L20-                             CATAGAAATTTTCTGGCACACACTAGGGCAAAAGCAGCAAT
rJMFF022A19-                             CATAGAAATTTTCTGGCACACACTAGGGCAAAAGCAGCAAT
                      ____________________________________________________________
consensus                  TTATAAAAATATCACATAGAAATTTTCTGGCACACACTAGGGCAAAAGCAGCAAT
 
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JMFN006L04+           GCCCATATGAAATGATTTAAAG-AAAAGACTCAAAAAAGCACTGTCAAGGATTGATTCAA
rJMFF020L20-          GCCCATATGAAATGATTTAAAG-AAAAGACTCAAAAAAACATTGTCAAGGATTGATTCAG
rJMFF022A19-          GCCCATATGAAATGATTTAAAGAAAAAGACTCAAAAAAACATTGTCAAGGATTGATTCAG
rJMFF040K05-                ATGAAATGATTTAAAG-AAAAGACTCAAAAAAACATTGTCAAGGATTGATTCAG
                      ____________________________________________________________
consensus             GCCCATATGAAATGATTTAAAG-AAAAGACTCAAAAAAACATTGTCAAGGATTGATTCAG
 
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JMFN006L04+           CAACAAAATGGAATTCTTACAGAAAAACTCTCAAGTGTTACCACTTGAAAATGCATTGAG
rJMFF020L20-          CAACAAAATGGAATTCTTACAGAAAAACTCTCAAGTGTTACCACTTGAAAATGCATTGAG
rJMFF022A19-          CAACAAAATGGAATTCTTACAGAAAAACTCTCAAGTGTTACCACTTGAAAATGCATTGAG
rJMFF040K05-          CAACAAAATGGAATTCTTACAGAAAAACTCTCAAGTGTTACCACTTGAAAATGCATTGAG
                      ____________________________________________________________
consensus             CAACAAAATGGAATTCTTACAGAAAAACTCTCAAGTGTTACCACTTGAAAATGCATTGAG
 
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JMFN006L04+           GAATGCTGACATGTATGTTTAGACTTCATCATGGAAAACAGATCTCAAACCATGATATCC
rJMFF020L20-          GAATGCTGACATGTATGTTTAGACTTCATCATGG-AAACTGATCTCAAACCATGATATCG
rJMFF022A19-          GAATGCTGACATGTATGTTTAGACTTCATCATGG-AAACTGATCTCAAACCATGATATCG
rJMFF040K05-          GAATGCTGACATGTATGTTTAGACTTCATCATGG-AAACTGATCTCAAACCATGATATCG
                      ____________________________________________________________
consensus             GAATGCTGACATGTATGTTTAGACTTCATCATGG-AAACTGATCTCAAACCATGATATCG
 
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JMFN006L04+           GAACGAACATATATAAACATTTAAGCATTAAACGATCAGATCAGGCCGTGCCATTCTCAG
rJMFF020L20-          GAACGGACATATATAAACATTTAAGCATTAAACGATCAGATCAGGCCGTGCCATTCACAG
rJMFF022A19-          GAACGGACATATATAAACATTTAAGCATTAAACGATCAGATCAGGCCGTGCCATTCACAG
JMFF044O20+                                     ATTAAACGATCAGATCAGGCCGTGCCATTCACAG
JMFN009I23+                                                                TTCTCAG
rJMFF040K05-          GAACGGACATATATAAACATTTAAGCATTAAACGATCAGATCAGGCCGTGCCATTCACAG
                      ____________________________________________________________
consensus             GAACGGACATATATAAACATTTAAGCATTAAACGATCAGATCAGGCCGTGCCATTCACAG
 
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JMFN006L04+           TCACCGGCACCTCCTTAGATTT----CTCGAATACAACTGGCTGAAGTTCCCCTTTTCCT
rJMFF020L20-          TCACCGGCACCTCCTTAGATTTCTCGCTCGTATCCAACTGGCTGAAGTTCCCCTTTTCCT
rJMFF022A19-          TCACCGGCACCTCCTTAGATTTCTCGCTCGTATCCAACTGGCTGAAGTTCCCCTTTTCCT
JMFF040K05+                                                        AGTTCCCCTTTTCCT
JMFF044O20+           TCACCGGCACCTCCTTAGATTTCTCGCTCGTATCCAACTGGCTGAAGTTCCCCTTTTCCT
JMFN009I23+           TCACTGGCACCTTCTTAGATTTCTCGCTCGTATCCAACTGGCTGAAGTTCCCCTTTTCCT
rJMFF040K05-          TCACCGGCACCTCCTTAGATTTCTCGCTCGTATCCAACTGGCTGAAGTTCCCCTTTTCCT
                      ____________________________________________________________
consensus             TCACCGGCACCTCCTTAGATTTCTCGCTCGTATCCAACTGGCTGAAGTTCCCCTTTTCCT
 
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JMFN006L04+           TGAACAACTAAGTGTGGTGGTGCCTGCAATACAGCTTATGCTCGTGTGCTACATAATTTG
rJMFF020L20-          TGAACAACTGAGTGTGGTGGTGCCTGCAATACAGCTTATGCTCGTGTGCTACATAATTTG
rJMFF022A19-          TGAACAACTGAGTGTGGTGGTGCCTGCAATACAGCTTATGCTCGTGTGCTACATAATTTG
JMFF040K05+           TGAACAACTGAGTGTGGTGGTGCCTGCAATACAGCTTATGCTCGTGTGCTACATAATTTG
JMFF044O20+           TGAACAACTGAGTGTGGTGGTGCCTGCAATACAGCTTATGCTCGTGTGCTACATAATNTG
JMFN009I23+           TGAACAGCTGAGTGTGGTGGTGCCTGCAATACAGCTTATGCTCGTGTGCTACATAATTTG
JMFF020L20+                                GCCTGCAATACAGCTTATGCTCGTGTGCTACATAATTTG
rJMFF040K05-          TGAACAACTGAGTGTGGTGGTGCCTGCAATACAGCTTATGCTCGTGTGCTACATAATTTG
                      ____________________________________________________________
consensus             TGAACAACTGAGTGTGGTGGTGCCTGCAATACAGCTTATGCTCGTGTGCTACATAATTTG
 
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JMFN006L04+           ATGGACTGATCACACAGCCGCCGTGACTGCACTTGAAACAAGCCCTGTGGTACGATGTTC
rJMFF020L20-          ATGGACTGATCACACAGCCGCCGTGACTGCACTTGAAGCAAGCCCTGTGGTACGATGTTC
rJMFF022A19-          ATGGACTGATCACACAGCCGCCGTGACTGCACTTGAAGCAAGCCCTGTGGTACGATGTTC
JMFF040K05+           ATGGACTGATCACACAGCCGCCGTGACTGCACTTGAAGCAAGCCCTGTGGTACGATGTTC
JMFF044O20+           ATGGACTGATCACACAGCCGCCGTGACTGCACTTGAAGCAAGCCCTGTGGTACGATGTTC
JMFN009I23+           ATGGACTGATCACACAGCCGCCATGAGTGCACTTGAAGCAAGCCCTGTGGTACGATGTTC
JMFF020L20+           ATGGACTGATCACACAGCCGCCGTGACTGCACTTGAAGCAAGCCCTGTGGTACGATGTTC
JMFF022A19+               ACTGATCACACAGCCGCCGTGACTGCACTTGAAGCAAGCCCTGTGGTACGATGTTC
JMFF001B08+                                             GAAGCAAGCCCTGTGGTACGATGTTC
rJMFF040K05-          ATGGACTGATCACACAGCCGCCGTGACTGCACTTGAAGCAAGCCCTGTGGTACGATGTTC
                      ____________________________________________________________
consensus             ATGGACTGATCACACAGCCGCCGTGACTGCACTTGAAGCAAGCCCTGTGGTACGATGTTC
 
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JMFN006L04+           CATCAACCG----CTTTTCAATGGGGTAAACTGTTTTCTTGCAAGCAAC-AATTTATCTT
rJMFF020L20-          CATCAACCGCTACCTTTTCAATGGGGTAAACTGTTTTCTTGCAAGCAACGCATTTATCTT
rJMFF022A19-          CATCAACCGCTACCTTTTCAATGGGGTAAACTGTTTTCTTGCAAGCAACGCATTTATCTT
JMFF040K05+           CATCAACCGCTACCTTTTCAATGGGGTAAACTGTTTTCTTGCAAGCAACGCATTTATCTT
JMFF044O20+           CATCAACCGCTACCTTTTCAATGGGGTAAACTGTTTTCTTGCAAGCAACGCATTTATCTT
JMFN009I23+           CATCAACCGCTACCTTTTCAATGGGGTAAACTGTTTTCTTGCAAGCAACGCATTTATCTT
JMFF020L20+           CATCAACCGCTACCTTTTCAATGGGGTAAACTGTTTTCTTGCAAGCAACGCATTTATCTT
JMFF022A19+           CATCAACCGCTACCTTTTCAATGGGGTAAACTGTTTTCTTGCAAGCAACGCATTTATCTT
JMFF001B08+           CATCAACCGCTACCTTTTCAATGGGGTAAACTGTTTTCTTGCAAGCAACGCATTTATCTT
rJMFF040K05-          CATCAACCGCTACCTTTTCAATGGGGTAAACTGTTTTCTTGCAAGCAACGCATTTATCTT
                      ____________________________________________________________
consensus             CATCAACCGCTACCTTTTCAATGGGGTAAACTGTTTTCTTGCAAGCAACGCATTTATCTT
 
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JMFN006L04+           GAGTACCCGCAAACAGGCTTGAAACTTTGCTGCTTGTGTGTCCCTGATCTGCAGCTCTTT
rJMFF020L20-          GAGTTCCCGCAAACAGGCTTGAAACTTTGCTGCTTGTGTGTCCCTGATCTGCAGCTCTTT
rJMFF022A19-          GAGTTCCCGCAAACAGGCTTGAAACTTTGCTGCTTGTGTGTCCCTGATCTGCAGCTCTTT
JMFF040K05+           GAGTTCCCGCAAACAGGCTTGAAACTTTGCTGCTTGTGTGTCCCTGATCTGCAGCTCTTT
JMFF044O20+           GAGTTCCCGCAAACAGGCTTGAAACTTTGCTGCTTGTGTGTCCCTGATCTGCAGCTCTTT
JMFN009I23+           GAGTTCCTGCAAACAGGCTTGAAACTTTGCTGCT--TGTGTCCCTGATCTGCAGCTCTTT
JMFF020L20+           GAGTTCCCGCAAACAGGCTTGAAACTTTGCTGCTTGTGTGTCCCTGATCTGCAGCTCTTT
JMFF022A19+           GAGTTCCCGCAAACAGGCTTGAAACTTTGCTGCTTGTGTGTCCCTGATCTGCAGCTCTTT
JMFF001B08+           GAGTTCCCGCAAACAGGCTTGAAACTTTGCTGCTTGTGTGTCCCTGATCTGCAGCTCTTT
rJMFF040K05-          GAGTTCCCGCAAACAGGCTTGAAACTTTGCTGCTTGTGTGTCCCTGATCTGCAGCTCTTT
                      ____________________________________________________________
consensus             GAGTTCCCGCAAACAGGCTTGAAACTTTGCTGCTTGTGTGTCCCTGATCTGCAGCTCTTT
 
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JMFN006L04+           CCCTCACCGTTTTTGGAGCCCCTTCAGAACTCTAGTCCAAGCTACCAGTCATT       
rJMFF020L20-          CCCTCACCGTTTTTGGAGCCCCTTCAAAACTCTTATCCAAGCTACCAGTCATTTTGAAAA
rJMFF022A19-          CCCTCACCGTTTTTGGAGCCCCTTCAAAACTCTTATCCAAGCTACCAGTCATTTTGAAAA
JMFF040K05+           CCCTCACCGTTTTTGGAGCCCCTTCAAAACTCTTATCCAAGCTACCAGTCATTTTGAAAA
JMFF044O20+           CCCTCACCGTTTTTGGAGCCCCTTCAAAACTCTTATCCAAGCTACCAGTCATTTTGAAAA
JMFN009I23+           CCCTCACCGTTTTTGGAGCCCCTTCAAAACTCTTATCCAAGCTACCAGTCACTTTGAAAA
JMFF020L20+           CCCTCACCGTTTTTGGAGCCCCTTCAAAACTCTTATCCAAGCTACCAGTCATTTTGAAAA
JMFF022A19+           CCCTCACCGTTTTTGGAGCCCCTTCAAAACTCTTATCCAAGCTACCAGTCATTTTGAAAA
JMFF001B08+           CCCTCACCGTTTTTGGAGCCCCTTCAAAACTCTTATCCAAGCTACCAGTCATTTTGAAAA
rJMFF040K05-          CCCTCACCGTTTTTGGAGCCCCTTCAAAACTCTTATCCAAGCTACCAGTCATTTTGAAAA
                      ____________________________________________________________
consensus             CCCTCACCGTTTTTGGAGCCCCTTCAAAACTCTTATCCAAGCTACCAGTCATTTTGAAAA
 
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rJMFF020L20-          GTTGATCAAAGTGTGGTTTGCAATATAAAACTCCTTCGAAAGAGTTGTAATTGCTGA   
rJMFF022A19-          GTTGATCAAAGTGTGGTTTGCAATATAAAACTCCTTCGAAAGAGTTGTAATTGCTGA   
JMFF040K05+           GTTGATCAAAGTGTGGTTTGCAATATAAAACTCCTTCGAAAGAGTTGTAATTGCTGAGCT
JMFF044O20+           GTTGATCAAAGTGTGGTTTGCAATATAAAACTCCTTCGAAAGAGTTGTAATTGCTGAGCT
JMFN009I23+           GTTGATCAAAGTGTGGTTTGCAATATAAAACTCCTTCGAAGGAGTTGTAATTGCTGAGCT
JMFF020L20+           GTTGATCAAAGTGTGGTTTGCAATATAAAACTCCTTCGAAAGAGTTGTAATTGCTGAGCT
JMFF022A19+           GTTGATCAAAGTGTGGTTTGCAATATAAAACTCCTTCGAAAGAGTTGTAATTGCTGAGC 
JMFF001B08+           GTTGATCAAAGTGTGGTTTGCAATATAAAACTCCTTCGAAAGAGTTGTAATTGCTGAGCT
rJMFF040K05-          GTTGATCAAAGTGTGGTTTGCAATATAAAACTCCTTCGAAAGAGTTGTAATTGCTGAGCT
                      ____________________________________________________________
consensus             GTTGATCAAAGTGTGGTTTGCAATATAAAACTCCTTCGAAAGAGTTGTAATTGCTGAGCT
 
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JMFF040K05+           TGAGAGTGCCCTTGCAATGGAAGCATCTGAAGCATGCCTTGTGGTAGACCTTATTGTCTG
rJMFF040K05-          TGAGAGTGCCCTTGCAATGGAAGCATCTGAAGCATGCCTTGTGGTAGACCTTATTGTCTG
                      ____________________________________________________________
consensus             TGAGAGTGCCCTTGCAATGGAAGCATCTGAAGCATGCCTTGTGGTAGACCTTATTGTCTG
 
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JMFF040K05+           CTCTGAGCTGATCCACCAAGTATACTGTCTTTTCACAAGCTTTACATTTCTGGGTTGTCC
rJMFF040K05-          CTCTGAGCTGATCCACCAAGTATACTGTCTTTTCACAAGCTTTACATTTCTGGGTTGTCC
                      ____________________________________________________________
consensus             CTCTGAGCTGATCCACCAAGTATACTGTCTTTTCACAAGCTTTACATTTCTGGGTTGTCC
 
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JMFF040K05+           CTGCAAACGTTGCCATCTCTCCTCTCAATCTCTCTCTCTCTCTCTCTCCTATCTTTTCT 
rJMFF040K05-          CTGCAAACGTTGCCATCTCTCCTCTCAATCTCTCTCTCTCTCTCTCTCCTATCTTTTCTC
                      ____________________________________________________________
consensus             CTGCAAACGTTGCCATCTCTCCTCTCAATCTCTCTCTCTCTCTCTCTCCTATCTTTTCTC